XLOC_037287


Basic Information

Item Value
gene id XLOC_037287
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34370860 ~ 34378332 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074919
tgatcgttcggtcgtgtgttctattgttccagctcAACAAACGTCGGCTCTGCATCGGTTAACGACCAGAGGCCGACGAAGCACTTTATCTCTCATACCCATGAAAGAATCCGGCAACATATttggtttacaaACTTtaatgtgcgcgcgcgcgtcttCAAACACTGGAGCGGAGAGGATGTTGCTATGGGAAACGAAGCTAACACGACACGACACCACCCAAAAGACACAACACGACTTCTCTCAAGCTGCCGTTTTGACtgttttcaggagtgagagaataacctcctgctacagaaaatataactcaagattcctaaatttctgaagggagctgatcacagagatacaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcataGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctggattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaagtacaataggactaggttcccactacaaggattagatttggctactgcagtcccggtttgggccagcctcacttgtgaagactaaagatgaagacaacatacaagaacaatttcgaggatggcgacacactttttattccacctatatatccccttttatgtgtaagcaacattccacaagataaaacaaaagtaaatgacaggttatttcttttaattttgtctgttttcttggaacattgtacacaatttacaaccagttttatttatataaataaaggtcagagcaagaaaatgttatgttttcttctggagaaagtcttatttcttttatttcggctagaataaaaacagttttgaattttttaaaaaacattttaaggtcaatattattagcccctttaagcattttttttcgactgtctacagaacaaaccatcgatatacaataacttgcctaattaccctaacctgtctagttaagctaattaacctaattaagcctttaaatgtcactttaagctgtatagaaaaatatctagtcaaatattatttactcggttattagaaatgagttatt
>TCONS_00074920
TAACACGACACGACACCACCCAAAAGACACAACACGACTTCTCTCAAGCTGCCGTTTTGACtgttttcaggagtgagagaataacctcctgctacagaaaatataactcaagattcctaaatttctgaagggagctgatcacagagatacaggaaagacagtattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagTTGGTTATATTTTTAGGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctggattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaagtacaataggactaggttcccactacaaggattagatttggctactgcagtcccggtttgggccagcctcacttgtgaagactaaagatgaagacaacatacaagaacaatttcgaggatggcgacacactttttattccacctatatatccccttttatgtgtaagcaacattccacaagataaaacaaaagtaaatgacaggttatttcttttaattttgtctgttttcttggaacattgtacacaatttacaaccagttttatttatataaataaaggtcagagcaagaaaatgttatgttttcttctggagaaagtcttatttcttttatttcggctagaataa
>TCONS_00074921
taaatttctgaagggagctgatcacagagatacaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgtaagtatatttttgactgactgccagacacttgtaaaacagtgatgagcaaacgaatggccgttcttttaaaaagatcagggagatgcaagtctggagattaatatacattttaattcaaaattgatttatctggaaatattttataatgttttgagatatgtgccctatatgcatttagatgtccatgcatgtttaaaatacttttaaatttaacaatggctgcaagttataaaaacataaacaaacacaaaaatgttaaagtaaattgagaaaacattttcatcagtttgacaacaggtagatcagctcctgacagacatgttaacagatcagtttaactcttattaaattcattcattcattcattcattcattcattttcttttctgcttagtccctttattaatctggggtcaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttccagctgcaagccatcactgggaaacaaccatatacgcttgttctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactac
>TCONS_00074922
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttaggtaataccagtgacaaagtattcagtaaattgcttataataaaagatGCTCACTGTTTACTCCCTTATAGTTAagttgtttgcagtttcattgtt
>TCONS_00074923
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaacttgactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcattacagtttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcataggtaacagcacatcctttgtgaaaaataatttatttttgtgccatcattacaagacaaaatac
>TCONS_00074924
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattccctttattaatctggggtcaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttccagctgcaagccatcactgggaaacaaccatatacgcttgttctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtca
>TCONS_00074925
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattccctttattaatctggggtcaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttccagctgcaagccatcactgggaaacaaccatatacgcttgttctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacag
>TCONS_00074926
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatattattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacagattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaa
>TCONS_00074927
gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctggattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaagtacaataggacta
>TCONS_00074928
tggacttgtaggcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttaggtaataccagtgacaaagtattcagtaaattgcttataataaaagatGCTCACTGTTTACTCCCTTATAGTTAagttgtttgcagtttcattgttgtaaaaataccatactttttcctttttttataagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaacttgactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcattacagtttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcataggtaacagcacatcctttgtgaaaaataatttatttttgtgccatcattacaagacaaaatacatttcaactgatTTCAG
>TCONS_00074929
gcaaaaccggagcacccagagaaaacccacgcaaacgcagagagaatttgcaaactacacacagaaatgcctgctgATCCAGCTGCGGCTCGAGTCAGcatccttgcttattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagcAGGTGTGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgttcaaaccatctctgagtgaatgacatcaaggaaacaggatcaaaagatcattcattatagaccGTCCTCCTGATCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagacttgtgcagctgtatccagacatacaagcagccgacaaagagttctggagcaggacagacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctgggtcagttggcgtttctgtgtgaagtttgcatgctctccccgtgttggcatgggtttcctccgggtgctccggttttcccaagtccaaagacatagattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaagtacaataggacta
>TCONS_00074930
acaatactgtgaaactgtgatatttttatccaagattataccctcagaattttttaatttatttttttttcagttggcctatattctgtttttatatgttcttggaaatgctgctgtgcatgaaaatgtgacgatatatccggttctatagttaattctgaaataaatcttaaaatgaaacaatatttaaaaatgcaatatttaatgtgtcagacactaaataaacatgtcaattcatttatattaatctgattccttaacagggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggttgctgcttcaagcttcggctggattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctgtcagacaacctctccaaagtacaataggactaggttcccactacaaggattagatttggctactgcagt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074919 False 1443 lncRNA 0.41 10 34370860 34378332
TCONS_00074920 False 1068 lncRNA 0.42 9 34371607 34378100
TCONS_00074921 False 740 lncRNA 0.36 2 34372136 34373543
TCONS_00074922 False 384 lncRNA 0.43 3 34372848 34374055
TCONS_00074923 False 612 lncRNA 0.39 4 34372848 34374415
TCONS_00074924 False 670 lncRNA 0.45 6 34372848 34374506
TCONS_00074925 False 611 lncRNA 0.47 4 34372848 34374579
TCONS_00074926 False 521 lncRNA 0.44 6 34372848 34376396
TCONS_00074927 False 715 lncRNA 0.47 8 34372848 34376410
TCONS_00074928 False 722 lncRNA 0.37 2 34373475 34374432
TCONS_00074929 False 751 lncRNA 0.48 7 34373486 34376410
TCONS_00074930 True 460 lncRNA 0.37 3 34375528 34377803

Neighbor

gene id symbol gene type direction distance location
XLOC_037285 NA coding upstream 74736 34286754 ~ 34296124 (+)
XLOC_037284 nxpe3 coding upstream 126893 34230067 ~ 34243967 (+)
XLOC_037283 mpc2 coding upstream 143388 34221997 ~ 34227472 (+)
XLOC_037282 gpr161 coding upstream 208486 34148714 ~ 34162374 (+)
XLOC_037281 f5 coding upstream 222864 34127005 ~ 34147996 (+)
XLOC_037288 lamp1b coding downstream 1967 34380299 ~ 34389875 (+)
XLOC_037289 NA coding downstream 12119 34390451 ~ 34391153 (+)
XLOC_037290 med14 coding downstream 19184 34397516 ~ 34429575 (+)
XLOC_037291 si:ch211-269e2.1 coding downstream 54721 34433053 ~ 34482698 (+)
XLOC_037292 shox coding downstream 262905 34641237 ~ 34647695 (+)
XLOC_037279 NA non-coding upstream 362294 33997142 ~ 34008566 (+)
XLOC_037276 NA non-coding upstream 606683 33726683 ~ 33764177 (+)
XLOC_037270 BX545856.2 non-coding upstream 1125105 33244198 ~ 33245755 (+)
XLOC_037261 BX511259.1 non-coding upstream 1288679 33074680 ~ 33082181 (+)
XLOC_037293 BX601644.1 non-coding downstream 412418 34790750 ~ 34790887 (+)
XLOC_037294 BX601644.6 non-coding downstream 444517 34822849 ~ 34828098 (+)
XLOC_037296 CR936415.1 non-coding downstream 591118 34969450 ~ 34969567 (+)
XLOC_037297 NA non-coding downstream 592511 34970843 ~ 34973324 (+)

Expression


Co-expression Network