XLOC_037289


Basic Information

Item Value
gene id XLOC_037289
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34390451 ~ 34391153 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075165
TTGCGTGTAGTTAGAACCGTCTATGTTCACCATTCAGTTGCGAAGGACTGTTATTGGCTCTCAGAAGTAATGTTATTTCTACACATCTTCCTGAGTTTAGTGATTGTTGCTGTAGAGAGACCTCCTGGCTCCATAAAGATTTTCTGAAGACATATAAACATCCTTTAGAacacaggaattgaggttgagacctatgctttagaACAACACCAGctctgtaaatattacttaaatcaACAGAATGTACCTGCATGAATGAGTGGCAGTCCTCTACATACTCTCCACGTGTGATCTGTTTAAAGCCTTCGCAGATTTCTGGGAGACTCTTTGCCTGTGAGATGAGGTTCTGATTGTGTCGAATTAGAGTCAAAGCCACACGGAACAGAATCTTGGATCCCTCATAGAAAAGACAGTCCCATATTCTTAGCACCGTCTGAGAAAATCACAATGGCAATCATAATTTTAAACATCAGTATCATAATACAATATTTTCAGAAAGATTGAAAGTTGTTTCATGACTGCTGATT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0006413 translational initiation biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007389 pattern specification process biological_process
GO:0021983 pituitary gland development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0007417 central nervous system development biological_process
GO:0060322 head development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075165 True 527 lncRNA 0.39 2 34390451 34391153

Neighbor

gene id symbol gene type direction distance location
XLOC_037288 lamp1b coding upstream 576 34380299 ~ 34389875 (+)
XLOC_037286 pou2f1b coding upstream 11777 34319333 ~ 34378674 (+)
XLOC_037287 NA coding upstream 12119 34370860 ~ 34378332 (+)
XLOC_037285 NA coding upstream 94327 34286754 ~ 34296124 (+)
XLOC_037284 nxpe3 coding upstream 146484 34230067 ~ 34243967 (+)
XLOC_037290 med14 coding downstream 6363 34397516 ~ 34429575 (+)
XLOC_037291 si:ch211-269e2.1 coding downstream 41900 34433053 ~ 34482698 (+)
XLOC_037292 shox coding downstream 250084 34641237 ~ 34647695 (+)
XLOC_037293 BX601644.1 coding downstream 399597 34790750 ~ 34790887 (+)
XLOC_037294 BX601644.6 coding downstream 431696 34822849 ~ 34828098 (+)
XLOC_037279 NA non-coding upstream 381885 33997142 ~ 34008566 (+)
XLOC_037276 NA non-coding upstream 626274 33726683 ~ 33764177 (+)
XLOC_037270 BX545856.2 non-coding upstream 1144696 33244198 ~ 33245755 (+)
XLOC_037296 CR936415.1 non-coding downstream 578297 34969450 ~ 34969567 (+)
XLOC_037297 NA non-coding downstream 579690 34970843 ~ 34973324 (+)
XLOC_037301 NA non-coding downstream 769491 35160644 ~ 35167934 (+)

Expression


Co-expression Network