XLOC_037291 (si:ch211-269e2.1)


Basic Information

Item Value
gene id XLOC_037291
gene name si:ch211-269e2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34433053 ~ 34482698 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073387
GCGAATATGTTGGACTGGGAGTATCCAAATCTATAGGTGCAGTGAGTTTTACATTAATCCTCCAATCCAGATGACGGCTGTCACTGTCCAGCTATGATCTGAGAGGAGATGATAGCAGAACCAACTTTACTGTCCAGATCGGTGCAAAAAGAGAATTCAGTAGTTGATGTTTCTTCCTGTGGATCGGTGCATCACACCTCAAGTGAGAGAAATGAAAACCGCCAAAAGACTGTGaGAGGAAAAAGGAAAGCCCGGGAATGCTCTGAGAATGCCAAAAGAAAGCATTCAAAGAGCAGTAATGGCAGCTTGGGCAGAGCAGAGAACGAACAGCTCAAAAATGGAGATGTGGAAGCCGTCACCCTGTTTGAAGTGGTCAGCATGGGCAGAAACGCCATGCAGGCTGTGGTGGACGACTGGATTGATGCATATACTGTAGACAGAGACACAGCACTGCTTGATCTCATCAGCTTCTTTATTCAGTGTTCAGGGTGCAAAGGAATGGTTACAGCAGAGATGTTTCAGAGCAAACAGGGAACCGACGTCATGAGTAAAATGGTGGAGGATCTGGATGAGGACGCTGGTTTTCAATACAAGAAGTTCCTTGCTTTTCCGTGGATTTTAACTGTCACATGGCCACTTGATATGGACAGTGGCGAGTATCCCCTCATCATGTCTGGCCTGTACTGGAAGAGATTTCGTTCACACTTCTGTGAGTTCATATCAGTGCTAGTGGCCCAGTGTCAGAGCTGTGTAATCTTCGACGGCTACCTCTTGAACACACTCATTTCACTGCTGACTGAGCTCTCCGATTCCAGAGTTCGGGCTTTCAGGCACACCTGTACGCTGGCAGCAGTGAAGCTGCTCAGCGCTTTGGTGAACGTGGCTCTAAACCTCAGTGTCAGTGTTGATAACAGTCAGCGGTTGTATGAAGTCGAGCTGGCCAAGATGGCAAGCAAACGGGCTTCTCCGAGACTTGACAGGATTCAGAGAAAGATCAGTGAGTTACAGGACAGAAAACTTGAAATTGAGAACATGATGGATGCCATTTTCAAAGGAGTCTTTCTGAAGAGATAcagAGACGTGATTCCCGAAATCAGATCCATCTGTATGGAGGAGCTGACGGTGTGGATGAAGTTGTATAGTTCAGTGTTTCTGAACGACAGCTACCTGAAGTATGTGGGATGGATGATGCATGACAAGCAACCTGATGTTCGTCTAAAGTGTGTTCTGGGTCTACAGGGACTTTATCAGGATCAAAATAGCTCCAAAATGGACCTTTTTACAGTACGGTTTAAGGAGAGGATGATCTCCATGACGCTGGATAAAGACCATGAAGTGGCCATCCAGGCCGTGAGATTGCTCATGGTCATCTCTCAATCCTGTGAGGATGTTCTGAGTCCTGATGACCACAAGAACGTCCTCCAATTTGTCTATTGCTCCCACAGACCTCTAGCCACCACTGCTGGCCAGTTCCTCTACAATAGGCTGCTCAGTAACCCTGAATTATCAACAACCAGAAACGGAGGTTCCAATCAGGACAGACACAGAGAGTTGGTCTTAGCTAAGGTTCGAGCCCTTATCAACTTCCACACTGAGAGCAAGCTGCACCAACATGTGCTATACCTGGTTGATAGCCTGTGGGACAGTGGAGGAGCTCTGCTGAAGGACTGGACTGGTCTTACCTCACTACTCTTACCTCACACGTCCTGTCAGGATCAAGCTCTGAGCAGTGCTGAGGAGGCCTTTGTGATTGAGCTCATGGTGGCGTCAGTAAGGCAGGCTGCAGAGGGTCCTCCGTTATCAGGGAGAGGAGCAGGAAAAAAGGTGATAAGCACTAAAgagaaaaaattacaaactgaTGACTGCGCCAAACTCACTGAACACTTCATTAAAGCGCTACCTGGGCTGTTATCCAAGTACTCAGAGGATGCTGAAAAACTGACCTCCTTTCTAAGAATACCTCGGTATTTCCAAATGGACACCTGTGATCCTGAAAACTCACAGTGTGTGCTGGCATTGCTGGCAGAGTTGGAGACTGCTGTGAACAGACACACGGATGTGGTACTACTGGAAACATCTGCTCGCTCTTATCAGAGCCTCTGTGCTCAAGATTCAGCATTTCACTCTCTGGCCCGTCCAGCCTTTGACCAGCTCATCCAGCACTGGACAAACACACTGGGGACACGATTAGCAGAATCACTGAGTGATGACTGTTTCACTTATAACGAAGACAACGTTTTGGAAATTCTGTCCACACTGAAGAAACTTGCTGCATTCAACATTGCTCAGGATCTGTCTAAATGGAGTCTGTATGAGCTGGTGACCAAACTTCTGGAGGGGGAGTTAAAACACGGCGGTCTTCCAGTAGAGGTGACTATTGAGGCTCTGCGCTGTATGTGTAGCTGCATCCTATGGAAGCTCAACACTTTTGGAGAAGGACTAACGTCCAGGGAGTCTGCCCTCCAGCAGAGAAACCAGCTCCGTGCCTTCTGTGAGAAATGCCACCGCTGTCTGTCGCATGCTGAGCAGCTTGTTCGAGAGCATGCCTTCATGTGTCTGAGTGACGTTCTCATAGCTCATAATTACCAGCTTCAGATGTGGGACTCGTCTGCAGGAACTCCACTGCTCTACACCCCTGATCCCAAACTCCAGAAAGCTCTTCTGTCCTTTATCCTGGAGCACATCTTCATCAGCCCTGACCCGGACTCTCACAGCAGTAAAGtcagTGAGAGTGAGAGTGGAGAAGGACGGCTGGAGGATTTGCACCGGCGCAGGAATCTTCTGTCGGCGTACTGTAAGCTCATAGTGCACAGTGTGTTAGAGATGAGCATGGCTGCAGAGGTTTTCAAGCAGTACGTGAAGTACTACAATGACTTTGGTGATATCATCAAAGAGACCCTGAACAGGACCCGGCAGATGGACAAGATGGAGAGCGCCAGGACGCTGGTGCAGTGCCTTCAGCAGCTGTATCTGCGGCTGAAACAGGAGCAGGACAGAGGAAACACATGCAGCTCCAGGATCCAGACGTACAGCAGTATCAAAGAACTGGCCAGACGCTTCTCTCTCACCTTCGGCTGGGACCAGATCAAATCCCGAGAGTCTCTGGCCATGATCCACAGGGACGGCATTGAATTTGTTTTCCAAGGGTTTGTTCAGCAGTCCGAGAAACAGTCTCCACCGTACGTCTCGTACCTCACCATCCTCAGCGAATTCTCCAGCAAACTGCTCAAACCTGACAAGAAGACCATTTATGGTTATCTGCAGAAGTTTGCAGGCGAGCAGGTCATCAGTAACCGAGAAGAGAGCTGGATGCCGCTGATTTACTACAGGGCATCTCTGATGGGCACAGCTGAGGGAGAGGATGCTGTTTCCTTCATCAGCTCCGACACCAACAAACAGCCCTCTCTCACTAACCGCTCCAGGTCTCCCTCTATTAGACTCGTCCAGTCTGAAGGAGAGCAACGCTTTCTTTCTCCCTCTACAGAACTGAGGGGAAGCAAGCTTTTGAGAAGTTTTAATGACTCAAAGGTCCAGCAAACTCCACTGAGCCGAGAACATCTTTATCTCCAGTCTGATAAAGGCCTGAGGAGCAGTGAGGAGGTGGATGTTGATACTGTAGAGATCGACGTCTAATGCTGTACTTCACTTTTGTTATCATgagtctttatatatatatatacatatatatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatatatatatatactgtatat
>TCONS_00073388
ttatttaacatgtgCTATGTGTCTTTGCATCCTGTTTTCAGAGAGAATTCAGTAGTTGATGTTTCTTCCTGTGGATCGGTGCATCACACCTCAAGTGAGAGAAATGAAAACCGCCAAAAGACTGTGaGAGGAAAAAGGAAAGCCCGGGAATGCTCTGAGAATGCCAAAAGAAAGCATTCAAAGAGCAGTAATGGCAGCTTGGGCAGAGCAGAGAACGAACAGCTCAAAAATGGAGATGTGGAAGCCGTCACCCTGTTTGAAGTGGTCAGCATGGGCAGAAACGCCATGCAGGCTGTGGTGGACGACTGGATTGATGCATATACTGTAGACAGAGACACAGCACTGCTTGATCTCATCAGCTTCTTTATTCAGTGCAAGTTTCACATTTTTGATACTCTCTTTTCAGAGATGTTTCAGAGCAAACAGGGAACCGACGTCATGAGTAAAATGGTGGAGGATCTGGATGAGGACGCTGGTTTTCAATACAAGAAGTTCCTTGCTTTTCCGTGGATTTTAACTGTCACATGGCCACTTGATATGGACAGTGGCGAGTATCCCCTCATCATGTCTGGCCTGTACTGGAAGAGATTTCGTTCACACTTCTGTGAGTTCATATCAGTGCTAGTGGCCCAGTGTCAGAGCTGTGTAATCTTCGACGGCTACCTCTTGAACACACTCATTTCACTGCTGACTGAGCTCTCCGATTCCAGAGTTCGGGCTTTCAGGCACACCTGTACGCTGGCAGttcaatttttgggtgaaatattccTTTTGAACTACCATCTGAATGCTAAATCTTTGAATTGTTTAAAACTTGAAATTGAGAACATGATGGATGCCATTTTCAAAGGAGTCTTTCTGAAGAGATAcagAGACGTGATTCCCGAAATCAGATCCATCTGTATGGAGGAGCTGACGGTGTGGATGAAGTTGTATAGTTCAGTGTTTCTGAACGACAGCTACCTGAAGTATGTGGGATGGATGATGCATGACAAGCAACCTGATGTTCGTCTAAAGTGTGTTCTGGGTCTACAGGGACTTTATCAGGATCAAAATAGCTCCAAAATGGACCTTTTTACAGTACGGTTTAAGGAGAGGATGATCTCCATGACGCTGGATAAAGACCATGAAGTGGCCATCCAGGCCGTGAGATTGCTCATGGTCATCTCTCAATCCTGTGAGGATGTTCTGAGTCCTGATGACCACAAGAACGTCCTCCAATTTGTCTATTGCTCCCACAGACCTCTAGCCACCACTGCTGGCCAGTTCCTCTACAATAGGCTGCTCAGTAACCCTGAATTATCAACAACCAGAAACGGAGGTTCCAATCAGGACAGACACAGAGAGTTGGTCTTAGCTAAGGTTCGAGCCCTTATCAACTTCCACACTGAGAGCAAGCTGCACCAACATGTGCTATACCTGGTTGATAGCCTGTGGGACAGTGGAGGAGCTCTGCTGAAGGACTGGACTGGTCTTACCTCACTACTCTTACCTCACACGTCCTGTCAGGATCAAGCTCTGAGCAGTGCTGAGGAGGCCTTTGTGATTGAGCTCATGGTGGCGTCAGTAAGGCAGGCTGCAGAGGGTCCTCCGTTATCAGGGAGAGGAGCAGGAAAAAAGGTGATAAGCACTAAAgagaaaaaattacaaactgaTGACTGCGCCAAACTCACTGAACACTTCATTAAAGCGCTACCTGGGCTGTTATCCAAGTACTCAGAGGATGCTGAAAAACTGACCTCCTTTCTAAGAATACCTCGGTATTTCCAAATGGACACCTGTGATCCTGAAAACTCACAGTGTGTGCTGGCATTGCTGGCAGAGTTGGAGACTGCTGTGAACAGACACACGGATGTGGTACTACTGGAAACATCTGCTCGCTCTTATCAGAGCCTCTGTGCTCAAGATTCAGCATTTCACTCTCTGGCCCGTCCAGCCTTTGACCAGCTCATCCAGCACTGGACAAACACACTGGGGACACGATTAGCAGAATCACTGAGTGATGACTGTTTCACTTATAACGAAGACAACGTTTTGGAAATTCTGTCCACACTGAAGAAACTTGCTGCATTCAACATTGCTCAGGATCTGTCTAAATGGAGTCTGTATGAGCTGGTGACCAAACTTCTGGAGGGGGAGTTAAAACACGGCGGTCTTCCAGTAGAGGTGACTATTGAGGCTCTGCGCTGTATGTGTAGCTGCATCCTATGGAAGCTCAACACTTTTGGAGAAGGACTAACGTCCAGGGAGTCTGCCCTCCAGCAGAGAAACCAGCTCCGTGCCTTCTGTGAGAAATGCCACCGCTGTCTGTCGCATGCTGAGCAGCTTGTTCGAGAGCATGCCTTCATGTGTCTGAGTGACGTTCTCATAGCTCATAATTACCAGCTTCAGATGTGGGACTCGTCTGCAGGAACTCCACTGCTCTACACCCCTGATCCCAAACTCCAGAAAGCTCTTCTGTCCTTTATCCTGGAGCACATCTTCATCAGCCCTGACCCGGACTCTCACAGCAGTAAAGGTAGTGAGAGTGGAGAAGGACGGCTGGAGGATTTGCACCGGCGCAGGAATCTTCTGTCGGCGTACTGTAAGCTCATAGTGCACAGTGTGTTAGAGATGAGCATGGCTGCAGAGGTTTTCAAGCAGTACGTGAAGTACTACAATGACTTTGGTGATATCATCAAAGAGACCCTGAACAGGACCCGGCAGATGGACAAGATGGAGAGCGCCAGGACGCTGGTGCAGTGCCTTCAGCAGCTGTATCTGCGGCTGAAACAGGAGCAGGACAGAGGAAACACATGCAGCTCCAGGATCCAGACGTACAGCAGTATCAAAGAACTGGCCAGACGCTTCTCTCTCACCTTCGGCTGGGACCAGATCAAATCCCGAGAGTCTCTGGCCATGATCCACAGGGACGGCATTGAATTTGTTTTCCAAGGGTTTGTTCAGCAGTCCGAGAAACAGTCTCCACCGTACGTCTCGTACCTCACCATCCTCAGCGAATTCTCCAGCAAACTGCTCAAACCTGACAAGAAGACCATTTATGGTTATCTGCAGAAGTTTGCAGGCGAGCAGGTCATCAGTAACCGAGAAGAGAGCTGGATGCCGCTGATTTACTACAGGGCATCTCTGATGGGCACAGCTGAGGGAGAGGATGCTGTTTCCTTCATCAGCTCCGACACCAACAAACAGCCCTCTCTCACTAACCGCTCCAGGTCTCCCTCTATTAGACTCGTCCAGTCTGAAGGTGagacactcactggccacttgggcgtggcaaaatga

Function

symbol description
si:ch211-269e2.1 Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus.

GO:

id name namespace
GO:0007062 sister chromatid cohesion biological_process
GO:0000785 chromatin cellular_component
GO:0008278 cohesin complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-267 Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus.

Ensembl:

ensembl_id ENSDARG00000074225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073387 False 3765 mRNA 0.47 32 34433053 34482698
TCONS_00073388 True 3282 mRNA 0.48 30 34434943 34477553

Neighbor

gene id symbol gene type direction distance location
XLOC_037290 med14 coding upstream 3478 34397516 ~ 34429575 (+)
XLOC_037289 NA coding upstream 41900 34390451 ~ 34391153 (+)
XLOC_037288 lamp1b coding upstream 43178 34380299 ~ 34389875 (+)
XLOC_037286 pou2f1b coding upstream 54379 34319333 ~ 34378674 (+)
XLOC_037287 NA coding upstream 54721 34370860 ~ 34378332 (+)
XLOC_037292 shox coding downstream 158539 34641237 ~ 34647695 (+)
XLOC_037293 BX601644.1 coding downstream 308052 34790750 ~ 34790887 (+)
XLOC_037294 BX601644.6 coding downstream 340151 34822849 ~ 34828098 (+)
XLOC_037295 tfdp1a coding downstream 468244 34950942 ~ 34968429 (+)
XLOC_037296 CR936415.1 coding downstream 486752 34969450 ~ 34969567 (+)
XLOC_037285 NA non-coding upstream 136929 34286754 ~ 34296124 (+)
XLOC_037279 NA non-coding upstream 424487 33997142 ~ 34008566 (+)
XLOC_037276 NA non-coding upstream 668876 33726683 ~ 33764177 (+)
XLOC_037297 NA non-coding downstream 488145 34970843 ~ 34973324 (+)
XLOC_037301 NA non-coding downstream 677946 35160644 ~ 35167934 (+)

Expression


Co-expression Network