XLOC_037295 (tfdp1a)


Basic Information

Item Value
gene id XLOC_037295
gene name tfdp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34950942 ~ 34968429 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073393
AGTTTTACAGACCTAGAGAGGGAGCAGGTTCTACTGTGCGCTCCTATTCATTCTACGCTAGACAGTTGAAGGCGGATGCAACCGACCtgacgTTTTGTTGTGGAAATTTGGCTCAGGTTTTTAAGCTAGACCAAGCATCAATTCCTCAGCCCCAGGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAGGTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATGGTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGGGTAAGTCATTCCTCAGCTGGTTATTATATAACCTTTTGTGGAGCCAGGTGTTTTACTGAATGTTTCGGATTTTCCTGTTGTCGCTCTGCGTTTGAATACTGCTGGAGAAATCCGTAACATTAATgatgatttttatatattatattttcatttcacTTTGCATTTGATACCATAAATGTGACCCTGTACTACAAAACTTACAA
>TCONS_00073394
AGTTTTACAGACCTAGAGAGGGAGCAGGTTCTACTGTGCGCTCCTATTCATTCTACGCTAGACAGTTGAAGGCGGATGCAACCGACCtgacgTTTTGTTGTGGAAATTTGGCTCAGGTTTTTAAGCTAGACCAAGCATCAATTCCTCAGCCCCAGGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAGGTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATGGTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGGAAAAAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTTTCCATGAAGGTTTGCGAGAAGGTCCAGCGGAAGGGTGTCACAACTTACAACGAGGTTGCTGATGAGCTTGTGGCCGAGTTCAGCTCTGGTGATAATCATATCTCTCCTAATGATGCGCATGTGTATGACCAGAAGAACATTCGACGGCGTGTGTACGATGCTCTCAATGTGCTGATGGCCATGAACATAATTTCCAAAGAGAAAAAGGAGATCAAATGGATTGGTCTGCCCACAAACTCTGCTCAGGAGTGCCAGAACCTGGAGGTGGAGAGGCAAAGACGTTTGGAGAGAATCAAACAAAAACAGTCACAACTTCAAGAACTTATATTACAGCAAATTGCTTTTAAGAACCTTGTACAGAGAAACCGCCAGAGAGAACAACAGACAAAAAGGCCCCCACCTGCCAACTCAGTCATTCACCTGCCATTTATTATCGTCAACACCAGCAAGAAAACAGTCATTGACTGCAGCATTTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGATAGCATGTTTGAGATTCACGATGACATTGAGGTATTGAAGCGCATGGGCATGGCTTGTGGTCTTGAGGTGGGCAAGTGCTCTGCTGAAGACCTGAAGACTGCTAGGAGCTTGGTGCCCAAAGCCCTGGAGCCTTATGTCACAGAAATGGCACAGGGACCTATCAGTAATGTCTACATGACGGGGGCTTCATCTGCAAATGGAGGTGGCCGCTATCATGTAGGAGGTGACAGTGGGGCCGATGCTACAATGGCCTCTAGTTCTAATGACTCCCACTACAGCGGCTCTCGGGTGGAGACTCCCGTCTCTTACATGGGTGAGGACGATGACGACGACGATGAGTTTGATGAAAACGACGACGAGGACTAAAAGCTCAGCCCTCCATCAAACCTGTCCATCGTGCACAAGTTCTTCCAGCTGCCATGTCTGAGAATTGATCAACCACATCGTTCTTTTAACTCTACTGCAACTCACTGTTTCTCTCACTCTCTGTCTGAGAAGGGCATTGAAGAACACGGGCTTTATCAGGATGAGTTGTTTTCATCCTCGTCTTTCTGAGCTCAGGACAAGCACATCATCATAGGCCGTGTGCTTTGCCTACTGGGAATTATAGTTTTCAGCTGAAGGACTTTGCTGAAGTTCAGAGGTGTCACTTTGTTCTTTGTCGCAGCGTTTCCTCCTGGATGTTATTCGCTCTGATCTGTGTGACCCTCCGAAAGAAAACCCAACCCCTCTTGCGTACAGCCTCGCGTGCTGTTGGAAAATGTTGTGTGATCTCTGTGTGAAGTAgttctcttgttttgtttttttgaatgaTCTTTTTTTCCCCGAACATGCTGGCTTGATTTGCGTTCTGATGATTCGGAGACTAATGAATCGAAGAACGTTTTAAAGCTGGATGCTATTTTTTGCCCCATGGAGGGCAGGTCTTTGGATGTGTGGACTTTTTTCATATGCTGACCTGATGTTTTCTTGCAGGCTTTTTTGTAGAATCTCCTCCTGTGTGTGTTCGGCTCCTTGGCATTCTGCAGAGCTCTACTTTTTTTGGAGGACTCTGAGAAGTCagtctatttgtttgtttgtttcgatTGTTCTTTCTTTCAGAGCTTCATAGGCCAACCTGTCCTAGAGACACTGGAGGACAACGGAGAAACTTCAGTACCTAAAAGCAGTTATAGGAATATAAAAATGCGTTGTTTCTTAACCACATGATATCAAGATTTGTTTCTAGTGTCCTCTCTCGGCGTCAGTTATACCTTGAAGCGTGTAAGGTTAATgttgtgtattaaaaaaaaa
>TCONS_00073395
tttttgtttcctgTTTGAGAGATGGGCTTCAGACCTCCTCTTCCTCTGTCCTCTTGCTAACTGGCTATGCCAACAAAAACAGCACCTAAGAAGGCAAAGGGCTTCAGGACTtgacgTTTTGTTGTGGAAATTTGGCTCAGGTTTTTAAGCTAGACCAAGCATCAATTCCTCAGCCCCAGGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAGGTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATGGTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGGAAAAAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTTTCCATGAAGGTTTGCGAGAAGGTCCAGCGGAAGGGTGTCACAACTTACAACGAGGTTGCTGATGAGCTTGTGGCCGAGTTCAGCTCTGGTGATAATCATATCTCTCCTAATGATGCGCATGTGTATGACCAGAAGAACATTCGACGGCGTGTGTACGATGCTCTCAATGTGCTGATGGCCATGAACATAATTTCCAAAGAGAAAAAGGAGA
>TCONS_00073396
ATGCCAACAAAAACAGCACCTAAGAAGGCAAAGGGCTTCAGGACTGTAAGTTCAGAGGAAAGTTTACAGACTTCATTTCCAGATGGCCATTTAAGTCCGATTCGTTTGCAAAACGtgacgTTTTGTTGTGGAAATTTGGCTCAGGTTTTTAAGCTAGACCAAGCATCAATTCCTCAGCCCCAGGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAGGTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATGGTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGGAAAAAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTTTCCATGAAGGTTTGCGAGAAGGTCCAGCGGAAGGGTGTCACAACTTACAACGAGGTTGCTGATGAGCTTGTGGCCGAGTTCAGCTCTGGTGATAATCATATCTCTCCTAATGATGCGCATGTGTATGACCAGAAGAACATTCGACGGCGTGTGTACGATGCTCTCAATGTGCTGATGGCCATGAACATAATTTCCAAAGAGAAAAAGGAGATCAAATGGATTGGTCTGCCCACAAACTCTGCTCAGGAGTGCCAGAACCTGGAGGTGGAGAGGCAAAGACGTTTGGAGAGAATCAAACAAAAACAGTCACAACTTCAAGAACTTATATTACAG

Function

symbol description
tfdp1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to several human genes including TFDP1 (transcription factor Dp-1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0043412 macromolecule modification biological_process
GO:0006473 protein acetylation biological_process
GO:0051276 chromosome organization biological_process
GO:0044665 MLL1/2 complex cellular_component
GO:0034708 methyltransferase complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0071339 MLL1 complex cellular_component
GO:0035097 histone methyltransferase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2883 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to several human genes including TFDP1 (transcription factor Dp-1).

Ensembl:

ensembl_id ENSDARG00000019293

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073393 False 668 lncRNA 0.44 5 34950942 34959774
TCONS_00073394 False 2317 mRNA 0.46 12 34950942 34968429
TCONS_00073395 False 749 mRNA 0.48 7 34952203 34962725
TCONS_00073396 True 875 mRNA 0.47 8 34952269 34962969

Neighbor

gene id symbol gene type direction distance location
XLOC_037294 BX601644.6 coding upstream 122844 34822849 ~ 34828098 (+)
XLOC_037293 BX601644.1 coding upstream 160055 34790750 ~ 34790887 (+)
XLOC_037292 shox coding upstream 303247 34641237 ~ 34647695 (+)
XLOC_037291 si:ch211-269e2.1 coding upstream 468244 34433053 ~ 34482698 (+)
XLOC_037290 med14 coding upstream 521367 34397516 ~ 34429575 (+)
XLOC_037296 CR936415.1 coding downstream 1021 34969450 ~ 34969567 (+)
XLOC_037297 NA coding downstream 2414 34970843 ~ 34973324 (+)
XLOC_037298 jam2b coding downstream 27816 34996245 ~ 35010396 (+)
XLOC_037299 gabpa coding downstream 46084 35014513 ~ 35030107 (+)
XLOC_037300 si:dkey-192g7.3 coding downstream 109117 35077546 ~ 35081996 (+)
XLOC_037289 NA non-coding upstream 559789 34390451 ~ 34391153 (+)
XLOC_037287 NA non-coding upstream 572610 34370860 ~ 34378332 (+)
XLOC_037285 NA non-coding upstream 654818 34286754 ~ 34296124 (+)
XLOC_037301 NA non-coding downstream 192215 35160644 ~ 35167934 (+)
XLOC_037302 CU074387.1 non-coding downstream 460773 35429202 ~ 35429316 (+)
XLOC_037307 NA non-coding downstream 1019415 35987844 ~ 36102672 (+)

Expression


Co-expression Network