G1816440 (LOC106582580)


Basic Information

Item Value
gene id G1816440
gene name LOC106582580
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46726295 ~ 46729079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2078087
gtaaagaatGGTTGGAAAAATTTgctgtgtcatgaacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaatgtgtgaggtagttgaaaaatgagttttaatgactccaacctaagtgtatgtaaacttccgacttcaactgtagttctaACAGTAGGTTCTGAACAGTATATAGTTCTAACAGTAGGTCCTGAACAGTAGGCTTGTAGAACATTCGGGCACAACCAGTGACACATTTTGGAGCCTTGAATGAAAAGTTCCATCCTACCTGGTTGTTTCTGCCGTGGTTTGGGCAGGTTGGTAACACAGCTGTGAGGACACATGAGGACGTTGCAGGGGTGGAGAGCTCCTTCCAGAAACCTCTGTTTGGTCTCTGCGATATGGATCCCCCCCAGCGGAGCCTTGGGCATTGTGTTGGCAGGGACCAGAGCTAGGCAGTACACCCCCACTTGGTGAATACTGTCTATAGCCTGTAGAACGCGGCTCATCCACTGGAAGCTGCCCTCCTCTGAAGCATCTGGTCTCTGTTCTGCCACCACTACAATACGCTCATCATGGAGAACCGAGACGGAGAACACTGCTATCctccccctGTAGACAAACTTCATGGGCTCCACTGCCAGCGCCGTGGCAACCACATCATCAGCGTTGTGTCTCCGCCCACACACCGTCATCAGCCCGTCCATTCTACCCACGATAAACACTAGGTTGTC

Function

NR:

description
PREDICTED: disco-interacting protein 2 homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2078087 True 730 lncRNA 0.49 3 46726295 46729079

Neighbor

gene id symbol gene type direction distance location
ints6 LOC106582497 coding downstream 569323 46119388 ~ 46156972 (-)
LOC118943596 NA coding downstream 697789 46011115 ~ 46028506 (-)
LOC110501932 LOC106582487 coding downstream 999901 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 1138583 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 1147389 45550854 ~ 45578906 (-)
spopla spopl coding upstream 140752 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 313146 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 357792 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 441324 47170403 ~ 47260466 (-)
cfap65 cfap65 coding upstream 748549 47476398 ~ 47553609 (-)
G1816433 NA non-coding downstream 13289 46710967 ~ 46713006 (-)
G1816423 NA non-coding downstream 27348 46696516 ~ 46698947 (-)
G1816332 NA non-coding downstream 187672 46538391 ~ 46538623 (-)
G1816189 NA non-coding downstream 232502 46492827 ~ 46493793 (-)
G1816180 NA non-coding downstream 239703 46486373 ~ 46486592 (-)
G1816441 NA non-coding upstream 627 46729706 ~ 46729953 (-)
G1816442 NA non-coding upstream 952 46730031 ~ 46730260 (-)
G1816443 NA non-coding upstream 1524 46730603 ~ 46730830 (-)
G1816444 NA non-coding upstream 4647 46733726 ~ 46734065 (-)
G1816445 NA non-coding upstream 5710 46734789 ~ 46734994 (-)
G1815615 LOC106582489 other downstream 885313 45838750 ~ 45840982 (-)
G1814480 NA other downstream 2052407 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 2172875 44473683 ~ 44553607 (-)
G1812404 NA other downstream 4048535 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 4121275 42603998 ~ 42605768 (-)
G1816841 NA other upstream 496472 47225551 ~ 47226646 (-)
G1816929 NA other upstream 672043 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 742215 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 1332970 48057851 ~ 48064453 (-)
G1817668 NA other upstream 1539708 48268787 ~ 48291496 (-)

Expression


Co-expression Network