XLOC_037298 (jam2b)


Basic Information

Item Value
gene id XLOC_037298
gene name jam2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34996245 ~ 35010396 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073398
AACTTTCAGAAGCGCGCGCGAGAGAAGTTTCCACATGCTCCTGCAGCAGCCGTACATCACgaagatgaaaacaaaacaactacTAACCTCTGCTCTTCTCCTGCTTATTTACATTCCAAGCTCAGATCCTGTTACGGTGACGACAAGCAAAGCAAAAATGGATGTGCATGAAAACACAAATGCTGTCCTGTCGTGTGAGTTCAGGACagaaaaagaaacaaacccacgtgTTGAATGGAAGAAGAGAGGCAAAGATGTTTCATATGTTTATTTTGAAGGGGATTTTACAGGTTCATATAAAGGCCGTGCGTCCATCGACGGGGCGACTCTGACCCTCCGTGGTGTCACACAGAAAGACTCGGGAGTGTATCATTGTGAAGTCACAGCCCGTCAGGACAAAATCAAGCTTGGGGAGGTCTCTGTCACCCTCAGTGTGCTTGTGCCACCCCATGCGCCAACCTGTGAGGTCCCGGAAGCGGTCATGAGAGGATTTTCTGCTGAACTGCACTGTAAAGATAAACTGAGTGTTCCTGCTGCCACCTACAGCTGGTACAAAGACAACAAACCACTCAACACTGCCAATCCCCATGATGTCCACTACACCCTGGACACAAAAACTGGGAGTCTGAAATTTAAGTCAGTGTCTAAATCTGATGAGGGTCAGTATAGATGTGAGGCCTCCAATGGTGTGGGAGCACCCAAAAGCTGTGCAGGCCATCATATGAAGATAACTGAATTTGagctgaacatgacaatgattaTTGCAATAGAAGTGGGAGCGTTCCTGCTGCTGGTGTCCTGCTGTGTGTCCATCTGTCTGTGCTGCAGACGAGGCTGCTGTCACTGCTGCCGCCGCCAgagtaaagaagaaataaaacAGAGcaAAACAAAGACCAGCTATAACCAGCCAACAGATCCGAGACGATACAAGCATACACAATCCTTTGTGCTGTGAAGAATGGACTCTTGTTGGCCAGTACCGTGCTAAGAGAAGTGAATTAAAGTGACCACA
>TCONS_00073399
ACTAACTATACCTGTTTACCAATGTCTACATCTTCTGACACAACTCCTGCATTTACCAACAGAgagtaaagaagaaataaaacAGAGcaAAACAAAGACCAGCTATAACCAGCCAACAGATCCGAGACGATACAAGCATACACAATCCTTTGTGCTGTGAAGAATGGACTCTTGTTGGCCAGTACCGTGCTAAGAGAAGTGAATTAAAGTGACCACAAACGCCAgagaaataatgtattttttcaaGTGCACTTGTACATTTCTACGCTTTAGGAGCAAAACCACGCCCCCTGGTGGCCAGATCTGAATACAGCTAAACAATCCACATCAGGCCTACTGCATCTACTGTTTCTTTTGTActactgtattgttttgttttttatttagaagTATTCAGTTGTTTTATTTACCAAGTAGTATTGTCTCATATCAATGATAGGTGATGCAACCTACAGTTTAAATGTAATATTGCACTATTTTATAGATTTGCCTACAGACATATCAAGTTGCTTAGCATCATGTTGCTAAGGAGGCCCAGCTACAGATGTGATGGTCTGTTTGGTTTGAGCAGAAACAGACTTGGTTCATCTCAGGATGTTGCTAAAGTCTGTAGTCATCATATAATCAATCTTCTGTAGATTTTAATCACAGGCACCTTGACTTGTTTCTACATCTTTTAAGcgtatgtatgtatttttctaATTGAAGAAACAGTCACACAGGTTTGGAATGGTTAGTTAATGATGgcagttttcttttttgtgtgtgaaatatgcctttttaaatatttttactttttgtttttcctTATATGTGATTCAGACAAGCAAAGAGTTGTTTTTCTTCCAAAACTATGTATTTTAGTC

Function

symbol description
jam2b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including mesoderm; musculature system; pectoral fin bud; pharyngeal arch; and ventral mesenchyme. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human JAM2 (junctional adhesion molecule 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080229-3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including mesoderm; musculature system; pectoral fin bud; pharyngeal arch; and ventral mesenchyme. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human JAM2 (junctional adhesion molecule 2).

Ensembl:

ensembl_id ENSDARG00000079071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073398 False 1012 mRNA 0.47 10 34996245 35009747
TCONS_00073399 True 866 lncRNA 0.36 3 35006091 35010396

Neighbor

gene id symbol gene type direction distance location
XLOC_037297 NA coding upstream 22921 34970843 ~ 34973324 (+)
XLOC_037296 CR936415.1 coding upstream 26678 34969450 ~ 34969567 (+)
XLOC_037295 tfdp1a coding upstream 27816 34950942 ~ 34968429 (+)
XLOC_037294 BX601644.6 coding upstream 168147 34822849 ~ 34828098 (+)
XLOC_037293 BX601644.1 coding upstream 205358 34790750 ~ 34790887 (+)
XLOC_037299 gabpa coding downstream 4117 35014513 ~ 35030107 (+)
XLOC_037300 si:dkey-192g7.3 coding downstream 67150 35077546 ~ 35081996 (+)
XLOC_037301 NA coding downstream 150248 35160644 ~ 35167934 (+)
XLOC_037302 CU074387.1 coding downstream 418806 35429202 ~ 35429316 (+)
XLOC_037303 si:dkey-67c22.2 coding downstream 821898 35832294 ~ 35842375 (+)
XLOC_037289 NA non-coding upstream 605092 34390451 ~ 34391153 (+)
XLOC_037307 NA non-coding downstream 977448 35987844 ~ 36102672 (+)
XLOC_037308 NA non-coding downstream 1114357 36124753 ~ 36177421 (+)
XLOC_037310 NA non-coding downstream 1760268 36770664 ~ 36775514 (+)

Expression


Co-expression Network