XLOC_003730


Basic Information

Item Value
gene id XLOC_003730
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44311334 ~ 44314410 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008700
gtgaaaatcccagtagatcagcagtttctgaaatactcagccacgttcaaagtctcttaaatcccctttcttccccattctgatgctcgctctgacctgcagcagatcctcttgatcatgtctacatgccgaaatgcagtgagctgctgccctgtgattggctgattagacattagtggtggacaggtgtacctaataaagtggccggtgagtgtgtatatgaATACATCTGAAAATGTAAACACATATATGACAGGGCAGTTCGTGTATTTGACCTTATGTTTACATATTTATCATTTCAATGGTTccaatattttagttttgtgttttgatgtgagtgtgtttgagagtgtgtgtgctcAGAGATGTGTCTCTGTCTCCCTCTGCTGGTCAGTGTTGTTTATCAcactgttgttgtgtgtgtgtgtgtgtgtgtgttatacagTTGTGTTCAGATCATGATGTCCCAGGATTCATCAAATACAAGGTGTTTGACGCCAAACatggATCAAACCCGTACACACTGAAGCTGTGCTTCTCTACGTCCtcacatctctgaacacacacacaatacacatgcAGACTGACACAAGCAAAAACACACTTAAACATTCtgttcctcacacacacacacacacacacacacacacacactcatccattCTCCGTCTCTCATATGGACCTTTTTCACTGAACGCGATGTTATTTCAGTtgagttcagctttatttgtacagcacttttacaatgtagactgtgtcaaagcagctccacATGGAAGATCATAGTGAGTGTAAACAGTGTAGTCCAGTGCTcagagtttaggttcagttcagttcagctcagctcactgtgctttaataatcactactgagagtccaaacactccatgcgcagctctacagatcccgaaccagtACAAAATATATCATCAAtgatgctttgtgtgtgtgtaaggaggATGCTGTGGTCTTGCGCTCGGTAGCTGATGTGTGTATGAGTCATGTTCACACAGCTCTGAGACCAGTAACATCTGCTGCTGTGGatcagcgccccctgctggactGATCACTGAACACACGCAGATTTAAAAGCATGGAAAACACAGCTGAGAgtcaatcatagatatatacacctGATATTGCATACGGACCctcagcatgcgtcaatagcgccgccatattggtacagtgctccagGACAGAAGTCACTCAGCCGCACTAGTCcagacccgccccgttttctacctgccgcgcccgatcccgctaaacagcgggggagaacaaaaccgaaaatcacccagctatacagtccagacagccaagacGCTCGCTTGTCACTATGGCAACCTCCATACAGCAATGATGAAAAAGgtctacacacacacacacacactagatgtAAAATATGATTATGTCACTCCAGGAACAGGAAGTGCCAGCGAATGACTGACAGGCTGATTTTCTTCTTCAATGCACTGGTGGACTACTGAGTGCCCTTAACAGACAGCAGACTGAAGACTGTGTTATTTATGTGTACAGCGGCTGCTTAACTAGAGACTGGGTTAACTagtcggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgagtgataaACGACGGCGATTAAAGCGCTTCTCTCAGCAGCCGTCTTCATTCAGTGAGCACTAGGTAGTGTACATCTTTAATCTGCTCTTACTAGTGGACGTGCAGCTCCGGGTCTGTCTGTACTGTATCATACTGTAATATGATGTTATTGATGGTTATTGATCTGATCAGTGTTTGGTCGCGTCTCATTGGTGTGTTTTTGGCCTCATTTGAATATTCATGATGAGAAATTTGCATAATCGTCAACATGGCGGATGTGTTCCGACTGTAAATAAGATGAAGAACTGTGAAGACTGATCACAGGGCAATAAACGACGACACACTGAACAACAGACACTCAGTACACctctgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtaaactgctCTTCTCCACAGGTCCAGCTGGTCTATCAGTGTGTTTGGCTTCAGCTCTGCTCATGTTCTCCTCTCATGTGTGTCACCATTGATGAACACATCTATATCCTCATTCAGCTGATCATATCACCTCATCATCATGAGCTGAGACGAATCAAACTCTAGTAGAAAGATGttgaatgaagtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtcttgagcATCAGTCCGTTCTCTGTTCTGAAGATGACTCTCCATCTctgcactctgattggctgttccaCCTCTTCTTCAACTAATCAGGCAATGTCTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007019 microtubule depolymerization biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044297 cell body cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04728 Dopaminergic synapse
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008700 True 2354 lncRNA 0.45 3 44311334 44314410

Neighbor

gene id symbol gene type direction distance location
XLOC_003729 HNRNPLL coding upstream 2302 44300548 ~ 44309032 (+)
XLOC_003727 NA coding upstream 114463 44163330 ~ 44196871 (+)
XLOC_003726 FO704721.1 coding upstream 173063 44135351 ~ 44138271 (+)
XLOC_003725 FP016005.2 coding upstream 286456 44024762 ~ 44024878 (+)
XLOC_003724 NA coding upstream 360674 43943882 ~ 43950660 (+)
XLOC_003731 NA coding downstream 2793 44317203 ~ 44318134 (+)
XLOC_003732 CABZ01100185.1 coding downstream 10351 44324761 ~ 44335322 (+)
XLOC_003733 CABZ01100187.1 coding downstream 21256 44335666 ~ 44335780 (+)
XLOC_003734 srsf7b coding downstream 42094 44356504 ~ 44363032 (+)
XLOC_003735 NA coding downstream 54717 44369127 ~ 44375182 (+)
XLOC_003369 CR854846.2 misc upstream 28188252 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31599338 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31617071 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31625735 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31631306 12679732 ~ 12680028 (+)
XLOC_003723 NA non-coding upstream 488481 43821555 ~ 43822853 (+)
XLOC_003722 NA non-coding upstream 493978 43811629 ~ 43817356 (+)
XLOC_003736 NA non-coding downstream 70514 44384924 ~ 44391541 (+)

Expression


Co-expression Network