XLOC_037300 (si:dkey-192g7.3)


Basic Information

Item Value
gene id XLOC_037300
gene name si:dkey-192g7.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35077546 ~ 35081996 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073407
CATTCATTTCACTTCCCTGAGAGCGATCGGTTGCGCGAGGAGCTTCTGCAAGAGGATATATAAGGCAAAGGAAAAGCAAGATGATTCTGATATTGCTGACACTTCTGCTATTCACGAGTGGCTCTGTCGTTGAACTAAAGTCTGGCTTCATTGGACAGGATGTACTTTTACCTTGTATTTGTTCTAATGACCCCGACGAACTGATATGGCAGAATGGCAATGTAATTGTGAATGGTTATTCAAAAGATGAAATCATCATCGATGCTTTCTACAAGGACAGAACACAACTCTTCCTGAATAATGAGAAAGGAAACTGCTCCCTGCTGCTGCTTAACATTACTTTGAAAGATGAAGGAGTTTATACCTGTCATCTCATAGTCAGTGTTAGCCCTAGAGTCTCGAAAACTACAAAACTAAAAGTTAATCTAACAGTGTCCGAAAAGGCCTCTACACACGATTATCGGAATGAACCAAGTAGAGAGGAATCTGCCACAGCCGTCTCTATTAGTGTTCCCATACTAGTAGTGGCAGGTTTACTGGCTATTGTGCTTCTGGTCCTACTGTTAAGAAGACGACACCGGAGAAACAATGACACTTATGTACCAGCCCAGAACAAAATACCAGAAGAAGTGTGACCTGGCGTGGAGGTATAATGGACTAAACTGTAAATGTGGGGTTCTTTACCACAACATGGACAGTATGAGGCCTGAGGCATGAATATATGCCTTTATAAATGGGCATTACGAAGAGGTGGATACTGAGTCGGGATGACCGTCGCAATGCCTTCAGTTGCAGCACTGTTACTCGACCACCACTGACTTGTGAATACACTGTGAATATTGTAAGCATTACAGTTTTGTAAATAGGAAAGATTCTTCTTGTAGGAATCGTCTTTATTCATTCTTTGAAGAACAGATGTAACAGGTGGAGGATGTGCAGATGAGGCAAATGGGTGGTCTTAGTTTTAGGCTTTTCAGATCACCTTGTTTATTATTCGTAAGCATACTGCAGTCATTTATTAAGCACATATCATGTAAGCATCTTTACATTTACTCCTGTATAGGTTGTCTTTTTCATTTATGTGGAAGAAATTTATGGCAGTCCCTATGGGAAATGTTtgcttttttactgtatttaatttcatttacttTTAAATGAATTCTGTGCTTCAAACCTGCTGAGGCAATAAAACTTTCACATATA
>TCONS_00075167
CATTTCACTTCCCTGAGAGCGATCGGTTGCGCGAGGAGCTTCTGCAAGAGGATATATAAGGCAAAGGAAAAGCAAGATGATTCTGATATTGCTGACACTTCTGCTATTCACGATGTCCGAAAAGGCCTCTACACACGATTATCGGAATGAACCAAGTAGAGAGGAATCTGCCACAGCCGTCTCTATTAGTGTTCCCATACTAGTAGTGGCAGGTTTACTGGCTATTGTGCTTCTGGTCCTACTGTTAAGAAGACGACACCGGAGAAACAATGACACTTATGTACCAGCCCAGAACAAAATACCAGAAGAAGTGTGACCTGGCGTGGAGGTATAATGGACTAAACTGTAAATGTGGGGTTCTTTACCACAACATGGACAGTATGAGGCCTGAGGCATGAATATATGCCTTTATAAATGGGCATTACGAAGAGGTGGATACTGAGTCGGGATGACCGTCGCAATGCCTTCAGTTGCAGCACTGTTACTCGACCACCACTGACTTGTGAATACACTGTGAATATTGTAAGCATTACAGTTTTGTAAATAGGAAAGATTCTTCTTGTAGGAATCGTCTTTATTCATTCTTTGAAGAACAGATGTAACAGGTGGAGGATGTGCAGATGAGGCAAATGGGTGGTCTTAGTTTTAGGCTTTTCAGATCACCTTGTTTATTATTCGTAAGCATACTGCAGTCATTTATTAAGCACATATCATGTAAGCATCTTTACATTTACTCCTGTATAGGTTGTCTTTTTCATTTATGTGGAAGAAATTTATGGCAGTCCCTATGGGAAATGTTtgcttttttactgtatttaatttcatttacttTTAAATGAATTCTGTGCTTCAAACCTGCTGAGGCAATAAAACTTTCACATATATGTTTGTGCAGTGTG
>TCONS_00073408
GTTGAACTAAAGTCTGGCTTCATTGGACAGGATGTACTTTTACCTTGTATTTGTTCTAATGACCCCGACGAACTGATATGGCAGAATGGCAATGTAATTGTGAATGGTTATTCAAAAGATGAAATCATCATCGATGCTTTCTACAAGGACAGAACACAACTCTTCCTGAATAATGAGAAAGGAAACTGCTCCCTGCTGCTGCTTAACATTACTTTGAAAGATGAAGGAGTTTATACCTGTCATCTCATAGTCAGTGTTAGCCCTAGAGTCTCGAAAACTACAAAACTAAAAGTTAATCTAACAGTGTCCGAAAAGGCCTCTACACACGATTATCGGAATGAACCAAGTAGAGAGGAATCTGCCACAGCCGTCTCTATTAGTGTTCCCATACTAGTAGTGGCAGGTTTACTGGCTATTGTGCTTCTGGTCCTACTGTTAAGAAGACGACACCGGAGAAACAATGTAAGCAGTCTTCAGTacatatttgctttttttttcttcttctttttttaaagtagtcTTGTGAGTGTTcattaaatgacaaaacagaTCATAGCAAATAGACTACATCTAAAGTGACTTGTAGCCGAATGCCTGTATGCATTTTGGGAAACATGCACTACTATACAGATGTGTTTGATTGCAATGCGTCTCACTGCTTATGTAGAAACTCAAGTTATACGTGTCATTTTTGATGAACTGAAAACAGATTAACATTGAAATGTGCTTTGAGACACCTGTCACACAATAATTAGTCTAATAATTAAATCTAATTATGTGACTATGAATTATAGCGTTTGAGTTTGAGGAAATActtgttttttaatatacatttagaaaatttacaggtaaaaactttaataataatcttTCAATAATTACTATGAGCGACACATTTGTTAAAGTAatcactatttttgttatcattgctaaataaatatacagctgTTCAAAGTTCATATTTGCTCAGGGTCatatttaattttgacattaagaataatacatgttttttagaatacatgtttttttaataatagtattttCCATGCAAAAGATGGGACATTTAttataaagtgtattttaaaaaaagtaattgtttaaaaatgaaaacctaAATCTAAGCTA

Function

symbol description
si:dkey-192g7.3 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-411 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000094012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073407 False 1203 mRNA 0.40 5 35077546 35081981
TCONS_00075167 False 899 lncRNA 0.40 4 35077550 35081996
TCONS_00073408 True 1125 lncRNA 0.33 2 35079570 35081230

Neighbor

gene id symbol gene type direction distance location
XLOC_037299 gabpa coding upstream 47439 35014513 ~ 35030107 (+)
XLOC_037298 jam2b coding upstream 67150 34996245 ~ 35010396 (+)
XLOC_037297 NA coding upstream 104222 34970843 ~ 34973324 (+)
XLOC_037296 CR936415.1 coding upstream 107979 34969450 ~ 34969567 (+)
XLOC_037295 tfdp1a coding upstream 109117 34950942 ~ 34968429 (+)
XLOC_037301 NA coding downstream 78648 35160644 ~ 35167934 (+)
XLOC_037302 CU074387.1 coding downstream 347206 35429202 ~ 35429316 (+)
XLOC_037303 si:dkey-67c22.2 coding downstream 750298 35832294 ~ 35842375 (+)
XLOC_037304 rcan1a coding downstream 761736 35843732 ~ 35865528 (+)
XLOC_037305 mab21l3 coding downstream 794931 35876927 ~ 35885260 (+)
XLOC_037294 BX601644.6 non-coding upstream 249448 34822849 ~ 34828098 (+)
XLOC_037293 BX601644.1 non-coding upstream 286659 34790750 ~ 34790887 (+)
XLOC_037289 NA non-coding upstream 686393 34390451 ~ 34391153 (+)
XLOC_037307 NA non-coding downstream 905848 35987844 ~ 36102672 (+)
XLOC_037308 NA non-coding downstream 1042757 36124753 ~ 36177421 (+)
XLOC_037310 NA non-coding downstream 1688668 36770664 ~ 36775514 (+)

Expression


Co-expression Network