XLOC_037303 (si:dkey-67c22.2)


Basic Information

Item Value
gene id XLOC_037303
gene name si:dkey-67c22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35832294 ~ 35842375 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073410
ATCCAGCGACAGGAGAGCGAAGAAGTATCGATGTCCTGCTTCGTGTGTTTCTGGGATGCAGGAGGACTGACTGAGCGCTGAATGTCATGGCGACCAACAGCGAGCAACTTTCTTGTGGTTTCGTAACTGATACAAATCAAGAAGTCAACAACAAAGAGTGAAAACTGAGGGTCAACACATTTTGTGTCCCAATTTACagagcaaagacaaaagaaattgtCACCAAGATTAAGATTGGGAAACAGCTGAACCAGTTCTTGACATGGAGTGTGCTGTGAAAACTGGCCCTGAGGATGAGCCATCTGATACTGCTGTTCCATATGAAGCCATGATTGTTAAAGATGGGAGCGAGaccccaaaaaagaaaaacaagaaacatAAGAAACACAAAAGTAAGAAGAAACGCAAGAAGCGTAAGGGTGAAAAAGAGAGCAGCTCTGAATCTGGTGTAGAGTCGGATGGTGATTCCAGAAAAAGAACAAGTCTGAAAAAAGATGGCTCTTCTAACCCAGAGGTTGATGATCTTGCGAATGCCACAAAAAACTGCACAGAAGATGCAGAAGCTGATGCTAAGATTAAAAAGCAGAAACATCGTGctgggaaaaagaagaaaaaacgaCGGAAAGAGGAAGAAAAGCAAGGGAAAAACTCCCCATCTCGATCAAGATCAGGAAGTACCTCAGGGTCAGGATCAGAATCAGAACCAGACTCTAAGCAATCACAAAAATTGCTGACGGAGTCTTTAAAGTTGGACAGGTGGTCTCCAATCAGTactattaaaatagaaaaaattcaAGATTGCACACCCGAACTAGAAGATCAAAACAGAGATACAACATCTGATCACAGTGAAGAAGAAAGTCTCAAATTAGGAGAGAGAAGAAAGCTGACTCCTGAGCCTGTGCATGCTCTAATTACAGAAAAGGACATAAAAGTGGAACCTATTGATAAAGATGAAAGTTATGGTATAGCTCAAGCACTTCCCGATATTATTCCCAAACAAGAAAATGTGCAGAAGGACATCTCAAAGGAAGCAAATGGTAAtcagaaggaaagaaaaaaactgacgCCTTCCAGGTCAAGGTCACGATCACTTTCAGACACTAAAGGAAAAAAATCCAAACAGAGTCGGTCTAGAACACCAAAGCAGTCATCTGCTAAATCAAGACGTAATAATGACAGATCATCTTCAAGGGACAGGTCTGTATCTGTCTCTGGTGGAAAAGATCGAACAAAACGTAGATGCTCAAGATCTCCTACTAAAGCAACAAAGAAGACTGTACGCAGGTCAAGGTCACTATCTGGTAAAAGAGGGTATCGCTCTGACTCAAGGTCTCGCACAAGGACCAAAAGATCCAGGAGTAAGTCCCTCCGACGTGGTCATCGTTCAAGGTCTAGGTCAACTGGAAGATCAAGACGGTCACGCTCAAGATCAAAGCAATCTGTTTCAAGAAGAAAGAATCGACGCTCACGATCTAGATCTTTACGCCGTGGAAGACACTCAAGGTCACGTTCTCGAAAAAGGACACCTGTTTCTCGAGCAAGACGATCCAGGTCCAGATCTGTCAGAAGAGCAAGACGAACACGCTCAAGATCCCCTGTGCTCCGTAGAAGATCCAGATCTCGCccaaaaagaaacagaagatcAAGATCTGTTCATAGAAGATCAATTTCAAGAAGCCCAAGACGTCGAAGTAAATCTCGATCCCCCTATCGCTCCAGGCCCTCTAAGTCACGTTCTCCTGCAGTCCGTAAAAGGAAGTCGAAGTCTAGGAGCCCTCATAGCACAAAGTCAGAATCAGTATCTCCTGTGCGACGTAAAAGATCAAAGTCACGGTCATCCTCACTTGATTCAAAGTCTGCATCACCAAAATTAAGAAAGAccaaaaagcaaaaaagtaaactgTCGAGGTCCATTTCTCCGAAACGCAAATCAAGGTCAATTTCCAGGGAACAACAATCATCCGATAGAAGCATATCCCCTTCCATGAAAGCACACTCCCCATCTCCTGCTAAAGAAGACAAGTCTTTAAAGGATAAGAATTCAAAAGAAACCTCAGAAACCACACAGAAACTTTTGGTAGCCATAGAGGAAAAGTTTGAAGTAAAGGGGACAGCAGGGTCTGGTGGATGGAGACCTGTGACTACTGAATGTACATCTGTTCAAAAACCAAAAAATGAAGATGTAACATCAGAATGTGGCCCTCTAAGTGCAAAAGTCAAGGAAGAGCCAGAGGATCCCTCTAAATGTGAAGAAAGACCTATCCGGTCCAGATCTTTGTCCTTAGATCCAGTTCCTCAACACGGTACAGCAGGGTCAGAAGAAGATTATCAATCAGGGAGCTCACGATCACCTTCACCTATTACAAAAGAAGATTCAAAGTCCTCCAACAAAACATCACCTGTAAGAAAAAAACGCTCTAGGTCAACTTCATCCACCAAGAAGAGAAGATCCAAGTCAAAATCTGTTAGCAACAAGAGGAGGTCAAGATCTCCTGCTAGAAAACGTAAGTCGAGGTCTCCATCGCATAGTCGTAAAAGAAGGACAAAGTCAAGGTCACCTGTTCGTAAAAGGAGATCTCGATCCAGATCAACAAATCGAAGGGCAAAATCAAGGTCAAAATCTCACACAAGAACAAAGCGCTCTAAGTCAAAATCCCCCAAGCGGAAACGGTCAAAGTCTAGATCACCAGTTCGAAAGAGGAGGTCAAAGTCACCTGCAAGAAAGAGAAGATCTCGTTCAAGATCAAGGGCTCGTAGGTCACGATCCAAAAGGTCACGTTCTGTGTCACGCCGGAGAAGACCAGCATTTAGAGGGCGATCATTTGACAGACGAGATCGGTGGAAACGTGAACCAAGTCATTCCCCAATTTTAATTCTCCGCAAAAGGAGGTCCACCTCAAGATCTCGACGGAGTTCTAGCAAGACGCCACCACGCCTTACTGACCTAGATAAAGAGCAACTATTGGAGATTGCAAAGGCTAATGCTGCTGCAATGTGTGCTAAAGCTGGAATGCCCATACCTGAAAGTCTCAAGCCAAAGGCAATTCTACAGTTACCCCTGCCAACCCCTGCTCCAGCCCCCTTGTCTTTGCCTCTGCCACTGCCCGTGCCCAATTTACCTATGAATCTGCCCATGGGTATACCAGGTATGCCTCCAATGCCAAACATGACAATGAACGCTGCTGTGGCAAGTATGACTGCAGCAACTATGACCGCTGCTCTTTCAAACATGGGTGCCCTGGCTGCTATGCCCCCAATGCCTCCACTTCCTACCATTACCAACAAGCCCCCTCCAGCACCCACACCTAATCTGGCCAGTATTGAAGAGGTAAAGAGGAAAGTGACTCAACAAGCTAACAGCATTAGCATCAAGGAGTTCACAGAGaaatgtaaacaaattgCACAGAGCAAAGAAGAGATGAGTATTGCACGGCCACATGTTTCAGATGATGAGGATGAGACACGGTAACCCACTGTCCTACTCTACTGTGTCTCTTATATCCCGAAGATGGAAACCTGTTGCTTACTTTCGGGATAAAGATGAACTCTGCCAGAGGCCAGTTTGTATCTTGTAAATGAAGCTTTTGTTGGCTCACAGGAGTTGGATATTTTGAGAATCTGGACACTTGAAACTACATTGATTTCAGTGGTTATCTTTAAATTGCGCAAGCTAcaggaacattttttttatttacagttaattAAAAACTACGAGATTATACCATTCAGTATGTCTCAAGGTGGAACAAAAAGAGTAAAGTGTGAAACAGACATGCGACCTGCTCAGACTGAcagtgaaacttttttttttttttttttttaccttcattACATATGGTGCCTCTTGATACCATGAAGAAGGACCTCTCTGGTACATTTATTTCAGATTAATAGGTGTAcctaaaagaagaagaaaaaatttgGGGTGCAACTTAGATCACTTGTCAGGTCTGTTGGTCCACACTTGTTCTGTTAACAcagataaatgattattttaggagtattcccccccccccctgtattttaaaatttattaagtgttaatcacttatttaaatgcatatatgGTGAAGATAATTGTTTTTGTTCCTTAACACTTTGTgaacttttaaaacaaattaaatgttgaGGTTCAGAATTGTGGCTGTACTTGAGTGCTATATTAACAGATGATTTTTGCATTGATGTGCATTGGAAAGGTTTTGACCACTGACTTACTTTTAGTTCGTTACTTTGGTTAAACCTTGCTGTGTACTGGTGACTGATATTGTGCTCTGAtgtaatctaaaataatattacaGAGAATGAACAGTCATTAATGAGATTTTGGGaattattttcacaattttagTGTATCATACGGTGCATCCTTATGAACGTGATGCAGTTGTGTGGTATACAAGTGCAGTTTTATTGATGTGACTGAAATATTTGACCCCTGCATAGGTGCAGGGTGGGATGCTGTATTTTCAGTAGAACATTTCACCTTTCTAGATGAGGGGTGATTAAAATGAATATGATTTGCGTAAGATTTTCATTTAGACACATGTACTGTAAGATGTACTATATACTGTGTAGGTGTATTtggtcagggtttttttttttttacctctcccCTCCACTGTCTTCTGCTATGGTGGAGATCACTTTCCAATTTATTTAAGAAATGTGATGACGGCACGGCTCCTCATAATCTGgaaaattcataatgttaatgttaacaattagtttatttaacttgacAGGATGTCTGACACTACATTGCTAAGTTGTAGATTTGACAGTGTATTGCCCTTGGTGAAAAAAGTGACACAGACTTCTTTCCACAGCTTCTTTCCACCTATAGTGTAGtgtgaatatcaataattaattaGATTAACACAAACAACAGATTTCAAACTGGacatttaattttcttgttgTTTCTTTTAAAGTGAGTGTTTGCTTGGTAATAAAAATTCTAGTATCATCTCTCACCCTCTCAAAAATTACATGATTGACTTATCCCCAAAACCAGAATATTATTTTGGTTTAGAATAACACCACAGGGATtatatgatgacagaattattttGAATTTTGCCTTCAAGTATGACCACGGCCATGGTTTCTTTAAGGTTAATAGGGACAAGTTCTTCTGCAGGTACAAGCCCACATTCCTTTCATAAAAATGTGAAAGATCTTCAGTTTTGACAGCATTTTTTAGCTTTTACATCACATTGTGAAACATAATGGCACACAATCTTTGTAAATAGTGCAACATCAAATAATAAAGGAAACAATCAAAATCA
>TCONS_00073411
GCTGAATGTCATGGCGACCAACAGCGAGCAACTTTCTTGTGGTTTCGTAACTGATACAAATCAAGAAGTCAACAACAAAGAGTGAAAACTGAGGGTCAACACATTTTGTGTCCCAATTTACagagcaaagacaaaagaaattgtCACCAAGATTAAGATTGGGAAACAGCTGAACCAGTTCTTGACATGGAGTGTGCTGTGAAAACTGGCCCTGCCATGATTGTTAAAGATGGGAGCGAGaccccaaaaaagaaaaacaagaaacatAAGAAACACAAAAGTAAGAAGAAACGCAAGAAGCGTAAGGGTGAAAAAGAGAGCAGCTCTGAATCTGGTGTAGAGTCGGATGGTGATTCCAGAAAAAGAACAAGTCTGAAAAAAGATGGCTCTTCTAACCCAGAGGTTGATGATCTTGCGAATGCCACAAAAAACTGCACAGAAGATGCAGAAGCTGATGCTAAGATTAAAAAGCAGAAACATCGTGctgggaaaaagaagaaaaaacgaCGGAAAGAGGAAGAAAAGCAAGGGAAAAACTCCCCATCTCGATCAAGATCAGGAAGTACCTCAGGGTCAGGATCAGAATCAGAACCAGACTCTAAGCAATCACAAAAATTGCTGACGGAGTCTTTAAAGTTGGACAGGTGGTCTCCAATCAGTactattaaaatagaaaaaattcaAGATTGCACACCCGAACTAGAAGATCAAAACAGAGATACAACATCTGATCACAGTGAAGAAGAAAGTCTCAAATTAGGAGAGAGAAGAAAGCTGACTCCTGAGCCTGTGCATGCTCTAATTACAGAAAAGGACATAAAAGTGGAACCTATTGATAAAGATGAAAGTTATGGTATAGCTCAAGCACTTCC

Function

symbol description
si:dkey-67c22.2 Predicted to enable RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing and regulation of cell cycle. Orthologous to human SON (SON DNA and RNA binding protein).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006397 mRNA processing biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5845 Predicted to enable RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing and regulation of cell cycle. Orthologous to human SON (SON DNA and RNA binding protein).

Ensembl:

ensembl_id ENSDARG00000055389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073410 False 5294 mRNA 0.41 8 35832294 35842375
TCONS_00073411 True 872 mRNA 0.40 5 35832370 35836174

Neighbor

gene id symbol gene type direction distance location
XLOC_037302 CU074387.1 coding upstream 402978 35429202 ~ 35429316 (+)
XLOC_037301 NA coding upstream 664360 35160644 ~ 35167934 (+)
XLOC_037300 si:dkey-192g7.3 coding upstream 750298 35077546 ~ 35081996 (+)
XLOC_037299 gabpa coding upstream 802187 35014513 ~ 35030107 (+)
XLOC_037298 jam2b coding upstream 821898 34996245 ~ 35010396 (+)
XLOC_037304 rcan1a coding downstream 1357 35843732 ~ 35865528 (+)
XLOC_037305 mab21l3 coding downstream 34552 35876927 ~ 35885260 (+)
XLOC_037306 atp1a1b coding downstream 59179 35901554 ~ 35922201 (+)
XLOC_037307 NA coding downstream 145469 35987844 ~ 36102672 (+)
XLOC_037308 NA coding downstream 282378 36124753 ~ 36177421 (+)
XLOC_037297 NA non-coding upstream 858970 34970843 ~ 34973324 (+)
XLOC_037296 CR936415.1 non-coding upstream 862727 34969450 ~ 34969567 (+)
XLOC_037294 BX601644.6 non-coding upstream 1004196 34822849 ~ 34828098 (+)
XLOC_037310 NA non-coding downstream 928289 36770664 ~ 36775514 (+)
XLOC_037311 BX664716.2 non-coding downstream 952009 36794384 ~ 36797834 (+)
XLOC_037312 NA non-coding downstream 1085680 36928055 ~ 36932532 (+)

Expression


Co-expression Network