XLOC_037304 (rcan1a)


Basic Information

Item Value
gene id XLOC_037304
gene name rcan1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35843732 ~ 35865528 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073412
ATGAAGCTCACTGTTTTCCGCAAATGAAGGACTGAAGCGAAgctatttattcattaaacacccaaCTAAACAGACAAACACTTAGTTTACAGTTAAAATAACAACTTACCTGTCGTCAATGCCGATACATAAACCTACAGTGTGCGCGAGTCGTTTAATGATGTCATCTTTCTATTGTATAGACAGATAAAGTAGCTTAGCTTGTCACACCATATGATTCACATCAGTCCAGTAGAACCGAATTAATTTGACGACCCATCCAGTATTGTCAAATTTACATTATGCAGCAGTCTTATAATGAGGAAAGTGAGGCCACCGTGGACGTGCATTTTACAGACCTGACTGATTCACTTGTGGCCTGGAAAGTTCCTGTGGATGTTTTTGCCATTGAAAGCCATTTAAGAGCAGGATTTGAGGATCTTTTCCGTGCCTTTGACCGAAATGTCACTTTCCAGTTCTTCAAGAGTTTCCGTCGGGTGAGGATTAATTTCACCAATGCTTTGGCCGCTGCAGAGGCAAGAGCAAAACTCCACAAAAGTGACTTCAATGGCAGAGAGTTACGACTCTATTTTGCACAGTCTGTCCACATTGGCAGTCCACACCTGGAACCTCCTAAACCAGATAAACAGTTCCTCCTTTCCCCTCCGCCATCACCTCCTGTGGGTTGGGAGCAGGCAAAAGACGCCACGCCCGTCATTAACTATGACCTCCTGTGTGCCATCGCTAGACTAGGGCCAGGTGAAAAATATGAACTCCAACCAGGAACTCCGACCACTCCAAGTGTGGTTGTTCATGTTTGTGACAATGATCAAGAAAGCTCAGGAAATGAGGAGGATATGGACGGAGGTGTACGTCAACGTCCGAAAATCATTCAGACTCGTCGTCCGGAGTACACTTCCTCAGTTACACAGTGAGCCTAGGGGGACTGTCATTGTGCCATAATCTTTGCTTTTACTGTCAAAGGACCCTCTGGGGGGGTGGATTTCTGTCGTGGCATGCAGTTGGTTTTTCAGACCACTAGAGGACGCCTTAAGACAGAACCCCAGCcctgtggagagagagagacatcacGTATATGTCCACCATCTCACAGGGCGAGAGGCTTCACTTGCATGCATTTGATGGTAGAGCGACTCATTTTTCAGCAGGCCGGGGGTTTTCAAGAGTGCTTTCATTGGTAACTGTGGCCATGGAGAACACAGAGTCTCCTATAGTgtagtgtttttgtaattttggGAAGCATGTTGAATCCCAGTCAGTGGGTGTGTTGAAAATATGAGTTTATCTTTTATGTTAGGTTAGCTTGATATTTTCAGGCTCTTATTCTAATAACTTGATGTGCAAGAGTGGAACTTCAGCTAGGGTAAATGCTGACTTTTTTGTCGTAATGTGGGGTTTAATTTTTTCAGTCATATGGCAATAGAGTGCGTTGATGCCCGATCCAATTTTTGCAGCAGTGCTGGTTCTGAAAGTCTCGTTCATATTTCCCCATAGGGGTTTTTATGTTATACGCCTTGTAACCAAACCAAACAGCTATGAGGTGAATCACAATTACAGTTACAATATTTGGTAACATTTCAATAAACACGTGTCTGTTATTAAGATTATGTTGATGTTGAttagtacttaagtacatattCTACATAATCTTATTTTACATACCTAATCCTACCTAATTTCTACCTTCATAACAAATAAAAAGGAGCAAATTAGAAGTTTAGGGCTAAAGTCATTatcaatggtttattaatagtgagatttgtatacagtatgtgacttAAATTTTGATTTAAAGCAAAGAATTATAgtaatcatataaataaaaaaaaggacaaaGACTCACGAAGGCTTCAATGAAGGAAAGATTCACAAGTCCAATGAAGCATTTTGAATGACATTATTGaattaaagttgttgttttttgtataaaaaatgttatatttctacttaattgtaaaataaatgcatttacataCACTGGTAGAGTTAGCAAAACTGAATTTTGAAGCTGTTTCATGTgggagtgggtggagctaaagatCTCTTGGTAAACTTTTCTTATTGCAGCTCTCTGATTGGTTGAATTTCTGTACAGCATCATGGGTATTGTAGTTTTTCTGTACAAAATCAGCTATTAAAAGgtgtatacaaaaataaattgaattaatttgaataaatgtgttaaattaagaACCAGAGTTCAGAAATGGTCTGGATTTTAAGGTTTATCAggctatattaataaaataacaaacaaaaatgaccaTATGGGGAAAATGAATGGAGTTTTTATTTCAGGAACCCGGCTGTTGCGCTTCATTGTGAGTCTCAAAACACCATGTGCCTCGGCGTGTTCCTAAATGAAGTGCTCTAATATACCTGACCTTTTTTAAGCTAATTCGTTTAGATATCTaatgcatttaattactttctgaGAGCCCACCATTCAAACCCAAAGTAgtcctttaagatttttttgaatGAACTGAAAGGCATGGTCCTCGATTTCATGCACTTGAGTTGTTTGTTGGACCATAACACTGTAATTGGGTTTTGATGGAGGACTGTTACCAATATGAGCACCAACTGATTTTATTACATTAAGCTCAATAGTGTGTTTCCTATGCCTTTTACTGTATATGTCTGTATATAATGGTATACGCATtcttttttacttgattttgaaAATGTCACTGACTTGGCAGAGGCTTGGGTGTGACCTGCCATACATGAATAACAGCCATAACTTCATTAAAAAGTTAATTTTTCTTCA
>TCONS_00073413
GAGAATAGAGCATTCCAGAAGATTCTGCCTCAGCTGAAGCAGCATCACGTGACCACAATACGAGGACGTTACTCAACCTGACCCATTTCCTTTCTGAAAGCCCCGAAGGCTCTCTGCTGGATTGACAACGTCTGAGAGAAGGAGGAAGAAAAGGAGCAGTGAAGAGGGTGTTTTTGAAGCATTTGTTTCCTGAAGCAGGCGTCATTTGTGTCCTCACGCTGGGGAAGGCAAAACGGACACGTCTCAACCCCTCCTGCCCTTTACATTCTTTAACCTCTCAAGTCCTCCGGAGGATCCGTCAACGGGCTTCAGTCATGCACCTGAAAACAATGAAGTGCAACCCTTTCTGCCTTATCGCTTCCTTAGAGGATCCGGACATGTTTAACAGTCCTGTGGAGATGGCAGGATTTGAGGATCTTTTCCGTGCCTTTGACCGAAATGTCACTTTCCAGTTCTTCAAGAGTTTCCGTCGGGTGAGGATTAATTTCACCAATGCTTTGGCCGCTGCAGAGGCAAGAGCAAAACTCCACAAAAGTGACTTCAATGGCAGAGAGTTACGACTCTATTTTGCACAGTCTGTCCACATTGGCAGTCCACACCTGGAACCTCCTAAACCAGATAAACAGTTCCTCCTTTCCCCTCCGCCATCACCTCCTGTGGGTTGGGAGCAGGCAAAAGACGCCACGCCCGTCATTAACTATGACCTCCTGTGTGCCATCGCTAGACTAGGGCCAGGTGAAAAATATGAACTCCAACCAGGAACTCCGACCACTCCAAGTGTGGTTGTTCATGTTTGTGACAATGATCAAGAAAG
>TCONS_00073414
AAGCCCCGAAGGCTCTCTGCTGGATTGACAACGTCTGAGAGAAGGAGGAAGAAAAGGAGCAGTGAAGAGGGTGTTTTTGAAGCATTTGTTTCCTGAAGCAGGCGTCATTTGTGTCCTCACGCTGGGGAAGGCAAAACGGACACGTCTCAACCCCTCCTGCCCTTTACATTCTTTAACCTCTCAAGTCCTCCGGAGGATCCGTCAACGGGCTTCAGTCATGCACCTGAAAACAATGAAGTGCAACCCTTTCTGCCTTATCGCTTCCTTAGAGGATCCGGACATGTTTAACAGTCCTGTGGAGATGGCAGGATTTGAGGATCTTTTCCGTGCCTTTGACCGAAATGTCACTTTCCAGTTCTTCAAGAGTTTCCGTCGGGTGAGGATTAATTTCACCAATGCTTTGGCCGCTGCAGAGGCAAGAGCAAAACTCCACAAAAGTGACTTCAATGGCAGAGAGTTACGACTCTATTTTGCACAGGTATGTGTCTAAAGaaataacacaacaactaaataacaatttaaattgtagtaaatattttttaatatattttaatgattatttgtcttatgttattatataattcaaaatacattattattcttattattaccattcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttattattattattattattattattattattaaacatgtttgactatataatttaatgattattgtattattattaaataaaatattgtaaatgtattaataaatattattattgctgttattgtttgataataataataattattattattttattattattagaacaaaatataaattataaatctacaatttatattttgttctaataatattaatagttattattattattattacatagtaTCAAtactaattactattattataataattattttattattaaatatcattacaattattaataataatattgtttaataatagtaataatgattagattattattattattat
>TCONS_00073415
GCTGTTTGTGTAATCTTCAGTCACCTTGATTTGTTCATTTCTGTTTCCACTAGCATATACATAGTATATTAATCTGAGATGTTTCCTCTGATTTACAGGCAGGATTTGAGGATCTTTTCCGTGCCTTTGACCGAAATGTCACTTTCCAGTTCTTCAAGAGTTTCCGTCGGGTGAGGATTAATTTCACCAATGCTTTGGCCGCTGCAGAGGCAAGAGCAAAACTCCACAAAAGTGACTTCAATGGCAGAGAGTTACGACTCTATTTTGCACAGTCTGTCCACATTGGCAGTCCACACCTGGAACCTCCTAAACCAGATAAACAGTTCCTCCTTTCCCCTCCGCCATCACCTCCTGTGGGTTGGGAGCAGGCAAAAGACGCCACGCCCGTCATTAACTATGACCTCCTGTGTGCCATCGCTAGACTAGGGCCAGGTGAAAAATATGAACTCCAACCAGGAACTCCGACCACTCCAAGTGTGGTTGTTCATGTTTGTGACAATGATCAAGAAAGCTCAGGAAATGAGGAGGATATGGACGGAGGTGTACGTCAACGTCCGAAAATCATTCAGACTCGTCGTCCGGAGTACACTTCCTCAGTTACACAGTGAGCCTAGGGGGACTGTCATTGTGCCATAATCTTTGCTTTTACTGTCAAAGGACCCTCTGGGGGGGTGGATTTCTGTCGTGGCATGCAGTTGGTTTTTCAGACCACTAGAGGACGCCTTAAGACAGAACCCCAGCcctgtggagagagagagacatcacGTATATGTCCACCATC

Function

symbol description
rcan1a Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; cardiac ventricle; heart; heart tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human RCAN1 (regulator of calcineurin 1).

GO:

id name namespace
GO:0033173 calcineurin-NFAT signaling cascade biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0070884 regulation of calcineurin-NFAT signaling cascade biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-135 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; cardiac ventricle; heart; heart tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human RCAN1 (regulator of calcineurin 1).

Ensembl:

ensembl_id ENSDARG00000003109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073412 False 2773 mRNA 0.39 4 35843732 35865528
TCONS_00073413 False 814 mRNA 0.49 4 35860975 35863572
TCONS_00073414 False 1019 lncRNA 0.29 2 35861072 35862896
TCONS_00073415 True 781 processed_transcript 0.48 3 35862084 35863842

Neighbor

gene id symbol gene type direction distance location
XLOC_037303 si:dkey-67c22.2 coding upstream 1357 35832294 ~ 35842375 (+)
XLOC_037302 CU074387.1 coding upstream 414416 35429202 ~ 35429316 (+)
XLOC_037301 NA coding upstream 675798 35160644 ~ 35167934 (+)
XLOC_037300 si:dkey-192g7.3 coding upstream 761736 35077546 ~ 35081996 (+)
XLOC_037299 gabpa coding upstream 813625 35014513 ~ 35030107 (+)
XLOC_037305 mab21l3 coding downstream 11399 35876927 ~ 35885260 (+)
XLOC_037306 atp1a1b coding downstream 36026 35901554 ~ 35922201 (+)
XLOC_037307 NA coding downstream 122316 35987844 ~ 36102672 (+)
XLOC_037308 NA coding downstream 259225 36124753 ~ 36177421 (+)
XLOC_037309 lrp1bb coding downstream 449339 36314867 ~ 36694998 (+)
XLOC_037297 NA non-coding upstream 870408 34970843 ~ 34973324 (+)
XLOC_037296 CR936415.1 non-coding upstream 874165 34969450 ~ 34969567 (+)
XLOC_037294 BX601644.6 non-coding upstream 1015634 34822849 ~ 34828098 (+)
XLOC_037310 NA non-coding downstream 905136 36770664 ~ 36775514 (+)
XLOC_037311 BX664716.2 non-coding downstream 928856 36794384 ~ 36797834 (+)
XLOC_037312 NA non-coding downstream 1062527 36928055 ~ 36932532 (+)

Expression


Co-expression Network