XLOC_037306 (atp1a1b)


Basic Information

Item Value
gene id XLOC_037306
gene name atp1a1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35901554 ~ 35922201 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073417
GTGCTGTTAGCTGAGTTTTCCTCAGACGCGCTGATCTTCTGATGGTCTGCTCACACTTCTGAAAGGCTCTTTCAAAGTCAACTTCAAGTAGAACAGTCGCTGCTCACAAGCAAAAATGGGGGTCGGGGATGGACGCGACCAGTATGAACTGGCGGCAACTTCGGAGCAAGGAGggaagaagaagaacaaaaacaagaagaaagaaaaagacatGGATGAATTGAAAAAGGAAGTGGATTTGGATGATCACAAGCTGACTTTGGAAGAGCTCAACCGTAAATATGGAACAGATCTGAACAGAGGTCTTACAACTGCCCGCGCTGCTGAAATTCTTGCCCGTGATGGACCCAATGCTCTCACCCCCCCTCCAACCACCCCAGAATGGGTCAAGTTCTGTAAGCAGATGTTTGGAGGTTTCTCCATGCTGTTGTGGACAGGTGCCCTTCTCTGCTTTCTTGCATATGGCATTCAGGCAGCAATGGAGGATGAGCCAGCCAATGACAATCTGTATTTAGGAGTTGTGCTTTCAGCTGTGGTTATCATCACTGGATGTTTCTCATACTATCAAGAAGCCAAGAGCTCCAAAATTATGGACTCCTTCAAGAATTTGGTTCCACAGCAAGCGTTGGTTGTCCGTGACGGTGAGAAGAATCATGTTAATGCTGAAGAAGTGGTGGTTGGTGATCTGGTGGAAGTAAAAGGTGGTGACAGGATCCCTGCTGACCTGAGAATCATAGCCTCACACGGCTGCAAGGTGGATAACTCATCTCTGACTGGAGAATCAGAGCCTCAGACAAGGTCCCCAGATTACTCAAATGATAATCCTCTAGAGACCAGGAATATTGCTTTCTTCTCAACCAACTGTGTTGAAGGCACTGCTCGCGGCATCGTCATCAGCACTGGAGACCGTACAGTAATGGGCCGAATTGCAACACTGGCATCTGGTCTGGAGGTTGGACGCACCCCTATCTCTATTGAGATTGAGCACTTCATCCATATCATCACTGGCGTGGCTGTCTTTCTGGGTGTCTCTTTCTTTGTCCTATCTCTTGCTCTTGGTTACTCCTGGTTGGAGGCTGTTATCTTTCTTATTGGCATCATTGTGGCCAACGTACCTGAAGGTCTCCTTGCTACAGTCACAGTTTGCCTCACCCTCACAGCTAAACGTATGGCTAAGAAAAACTGTTTGGTTAAGAATCTGGAGGCTGTTGAAACCCTGGGCTCAACCTCAACCATCTGTTCTGATAAAACTGGCACATTAACGCAGAATCGTATGACCGTAGCTCACATGTGGTTTGATAACCAGATCCACGAGGCCGACACCACAGAGAATCAGAGTGGCACCAGCTTTGACCGTAGCTCAGCCACCTGGGCCTCACTGGCCCGCGTTGCTGGGCTCTGCAACAGGGCTGTATTCCTAGCTGAACAGACTGATGTGCCAATTCTGAagAGAGATGTTGCTGGAGATGCGTCTGAATCTGCCCTGCTGAAGTGCATTGAGCTTTGCTGTGGATCAGTGAAAGATATGAGAGAAAAGTACACCAAAGTGGCGGAAATCCCTTTTAACTCCACAAACAAATATCAGCTGTCGGTGCATAAGAACCCAAATGGTGGCACAGAGTCTAAGCATCTGCTGGTGATGAAAGGAGCCCCAGAGAGAATCCTGGACCGCTGCTCTACGATATTGATCCAAGGAAAGGTGCAAGCTTTGGATGATGAAATGAAAGAAGCCTTTCAGAATGCTTACCTGGAGCTTGGAGGCCTTGGAGAAAGAGTTTTGgGATTCTGTGATTTCTGCCTCCCGGACGAAGAGTTTCCAGAAGGTTTTCCGTTTGATACTGAGGATGTGAATTTCCCTACTGAGAATCTGTGCTTTGTGGGTCTCATGTCAATGATTGATCCTCCGCGTGCTGCTGTTCCTGATGCTGTAGGCAAATGCAGAAGTGCTGGAATCAAGGTTATCATGGTTACCGGTGACCATCCCATCACTGCTAAAGCCATAGCGAAGGGTGTTGGGATTATTTCTGAAGGTAATGAGACTGTGGAAGATATTGCCGCTCGCTTGAACATTCCTGTCAATGAGGTGAACCCCAGAGATGCAAAGGCCTGTGTGGTTCACGGAGGAGATCTGAAGGACCTCTCGTGTGAACAGCTGGATGACATTCTGAAGCACCACACTGAAATAGTGTTCGCCAGAACGTCACCACAGCAGAAACTGATTATTGTTGAAGGCTGTCAGCGACAGGGAGCTATAGTGGCTGTAACAGGGGATGGTGTGAATGATTCTCCAGCCCTGAAGAAGGCTGATATCGGTGTCGCTATGGGCATTGCTGGCTCAGACGTGTCCAAACAGGCTGCGGACATGATCCTTCTGGATGACAACTTTGCCTCAATCGTCACAGGTGTAGAGGAAGGCCGTCTTATCTTTGACAACCTGAAGAAGTCCATTGCTTACACCCTGACCAGCAACATCCCTGAAATCACACCGTTCCTGCTCTTCATTATCGCTAACATCCCCTTGCCTCTTGGAACTGTGACCATTCTGTGTATTGATCTGGGAACAGACATGCTGCCTGCTATTTCTCTGGCGTACGAGGCTGCTGAGAGCGATATCATGAAGAGGCAGCCAAGAAACCCTAAAACGGACAAGTTGGTGAATGAAAGACTTATTAGCATCGCATATGGACAGATAGGTATGATTCAGGCTCTGGCTGGATTTTTCACCTATTTTGTCATTCTTTCTGAAAATGGCTTTTTACCATCAAGACTACTAGGAATACGTGTATATTGGGATGACAAGCATATTAATGACCTGGAGGACAGTTATGGGCAACAGTGGACATATGAGCAGAGGAAGATTGTGGAGTTCACTTGCCACACAGCGTTCTTCGCCAGCATTGTGGTCGTGCAGTGGGCCGATCTGATTATCTGCAAGACCAGGCGCAATTCTGTCTTCCAGCAGGGAATGAAGAACAAAATCCTGATCTTTGGATTGTTTGAGGAAACGGCTTTGGCGGCTTTCTTGTCTTACTGCCCTGGCATGGATGTGGCTCTCAGAATGTACCCTCTCAAGCCCAACTGGTGGTTCTGTGCCTTCCCGTACTCTCTTCTCATCTTTATTTATGATGAAATGAGAAAGCTCATCCTTAGACGAAACCCAGGAGGTTGGGTGGAAAGAGAGACGTATTACTAGTCAAGATGTCCGCAGTTCTCTGTTTTCTCTTTGTGGAGTTCCAGTAGTTTTGCTGTTTTGAATTTaacatgtacattttaaaatatttttatatagaaCAATTGTAGTTCTGAGATCCTGCAGACACTGATACAGATAGACTTGAAAAGCGTAAGTGTTTTATAATTGTGTAATTTGAATAAACTGTGTTCGAATTCACTAAAAA

Function

symbol description
atp1a1b Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and neural tube. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-5 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and neural tube. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000019856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073417 True 3398 mRNA 0.47 22 35901554 35922201

Neighbor

gene id symbol gene type direction distance location
XLOC_037305 mab21l3 coding upstream 16294 35876927 ~ 35885260 (+)
XLOC_037304 rcan1a coding upstream 36026 35843732 ~ 35865528 (+)
XLOC_037303 si:dkey-67c22.2 coding upstream 59179 35832294 ~ 35842375 (+)
XLOC_037302 CU074387.1 coding upstream 472238 35429202 ~ 35429316 (+)
XLOC_037301 NA coding upstream 733620 35160644 ~ 35167934 (+)
XLOC_037307 NA coding downstream 65643 35987844 ~ 36102672 (+)
XLOC_037308 NA coding downstream 202552 36124753 ~ 36177421 (+)
XLOC_037309 lrp1bb coding downstream 392666 36314867 ~ 36694998 (+)
XLOC_037310 NA coding downstream 848463 36770664 ~ 36775514 (+)
XLOC_037311 BX664716.2 coding downstream 872183 36794384 ~ 36797834 (+)
XLOC_037297 NA non-coding upstream 928230 34970843 ~ 34973324 (+)
XLOC_037296 CR936415.1 non-coding upstream 931987 34969450 ~ 34969567 (+)
XLOC_037294 BX601644.6 non-coding upstream 1073456 34822849 ~ 34828098 (+)
XLOC_037312 NA non-coding downstream 1005854 36928055 ~ 36932532 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G52828 NA unknown CI01000009 null 4217420 ~ 4231469 (-)