G1817479


Basic Information

Item Value
gene id G1817479
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47921536 ~ 47922173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079455
ATAGGGTATTCTATATGGTATTCTATAGGGTATTCTACTGTATAGGGTATTCTAAATGGTATTATATAGGGTCTTCTACTGTATAGGGTATTCTAAATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCTAAATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCTAAATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCtataggtgtcacgccctgaccttagttatctttgttttctttattatttggttgggtcagggtgtgacgagggtggtttgtttaggttttgtattgtctaaggttttgtatgtctagggttttttattgtcta
>TU2079457
CTACTGTATATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCTAAATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCTAAATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCTAAATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCtataggtgtcacgccctgaccttagttatctttgttttctttattatttggttgggtcagggtgtgacgagggtggtttgtttaggttttgtattgtctaaggttttgtatgtctagggttttttattgtcta
>TU2079458
AGGGTCTTCTACTGTATAGGGTATTCTATATGGTATTCTATAGGGTCTTCTACTGTATAGGGTATTCtataggtgtcacgccctgaccttagttatctttgttttctttattatttggttgggtcagggtgtgacgagggtggtttgtttaggttttgtattgtctaaggttttgtatgtctagggttttttattgtcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079455 False 349 lncRNA 0.35 3 47921536 47922052
TU2079457 False 303 lncRNA 0.36 2 47921536 47921879
TU2079458 True 200 lncRNA 0.38 2 47921536 47922173

Neighbor

gene id symbol gene type direction distance location
ptprna LOC106582506 coding downstream 87282 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 285896 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 367927 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 661070 47170403 ~ 47260466 (-)
LOC110501994 hnmt coding downstream 817708 47086871 ~ 47103828 (-)
LOC110501953 ihh coding upstream 135678 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 217588 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 583272 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 1040039 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1547929 49470102 ~ 49480960 (-)
G1817460 NA non-coding downstream 43699 47870020 ~ 47877837 (-)
G1817451 NA non-coding downstream 68895 47852361 ~ 47852641 (-)
G1817448 NA non-coding downstream 80626 47840691 ~ 47840910 (-)
G1817416 NA non-coding downstream 170276 47750693 ~ 47751260 (-)
G1817406 NA non-coding downstream 191328 47729357 ~ 47730208 (-)
G1817526 bin1 non-coding upstream 65994 47988167 ~ 48010646 (-)
G1817540 NA non-coding upstream 107842 48030015 ~ 48030821 (-)
G1817541 NA non-coding upstream 109220 48031393 ~ 48034662 (-)
G1817543 bin1 non-coding upstream 117857 48040030 ~ 48080797 (-)
G1817549 NA non-coding upstream 152992 48075165 ~ 48076165 (-)
G1817287 LOC106582526 other downstream 448152 47471294 ~ 47473384 (-)
G1816929 NA other downstream 519489 47400985 ~ 47402047 (-)
G1816841 NA other downstream 694890 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2080554 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3247648 44673447 ~ 44673888 (-)
G1817668 NA other upstream 346614 48268787 ~ 48291496 (-)
G1817836 NA other upstream 536853 48459026 ~ 48460040 (-)
G1817968 NA other upstream 547425 48469598 ~ 48470035 (-)
G1818059 NA other upstream 705191 48627364 ~ 48627846 (-)

Expression


Co-expression Network