G1817541


Basic Information

Item Value
gene id G1817541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48031393 ~ 48034662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079528
gcagagtaggggttagggtagattTAGGgtagagtaagggttagggtaggtttcgggtagtgtaggggttagggtaggtttagggtagagcaggggttagggtaggtttagggtagagtaggggttagggtaggtttagggtAGCGTAGGGGTAGGTTTAGggtagagtaggggttagggtaggtttagggtagagtaggggttagggtagggttagggttagggttagggttagggttagggtaggtttagggtagagtaatggttagggtaggttagggtatagtaggggttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggtttagggtagagtaaggtttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggttcagggtagagtaagggttagggtaggtttagtgtagagtaagggttagggtaggtttagggtAGAGTAAGGGTAGGTTTCGggtagagtaggggttagggtaggtttagtgTAGAGTAAGGGTAGGTTTCGGgtagagtaagggttagggtaggtttagggtagagtaagggtaggtttagggtagagtaagggtaggtttagggtagagtaagggttagggtagggttagggtagagtaAGGATTAGGGTTGGTTTTGGTTAGAGTAGGGGTtaagttaggtttagggtagaggaatggttagggtaggtttagtgtagagtatgggttagggtaggtttagtgtagagtacgggttagggtaggttta
>TU2079530
GGTTTAGGGTAGAGTAAGGGATAGGGTAGGTTTAGggtagagtaggggttagggtaggtttagggcagagtaggggttagggtagattTAGGgcagagtaggggttagggtagattTAGGgtagagtaagggttagggtaggtttcGGGTAGAGTAATGGTTAGGGTAGGTTAGGGtatagtaggggttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggtttagggtagagtaagggttagggtaggtttagggtagagtaggggatagggtaggtttagggtagagtaggggttagggtaggtttagggcagagtaggggttagggtagattTAGGgtagagtaagggttagggtaggtttcGGGTAGAGTAATGGTTAGGGTAGGTTAGGGtatagtaggggttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggtttagggtagagtaaggtttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggtttagggtagagtaggggttagggtaggttcagggtagagtaagggttagggtaggtttagtgtagagtaagggttagggtaggtttagggtAGAGTAAGGGTAGGTTTCGggtagagtaggggttagggtaggtttagtgTAGAGTAAGGGTAGGTTTCGGgtagagtaagggttagggtaggtttagggtagagtaagggtaggtttagggtagagtaagggtaggtttagggtagagtaagggttaggttagggtagaGTAAGGATTAGGGTTGGTTTAGGTTAGAGTAGGGGTtaagttaggtttagggtagaggaatggttagggtaggtttagtgtagagtatgggttagggtaggtttagtgtagagtacgggttagggtaggtttatTGTAGAGTAAGGATTAGGGTTGGTTTAGGGTAGAgtaggggttaggttaggtttagggtagaggaatggttagggtaggtttagggtAGAGTAGGGGTAGGTTTAGTgtagagtacgggttagggtaggtttagtgTAGAGTAGGTGTTAGGGTAGGTTTAGtgtagagtaggggttagggtaggtttagggtAGAGTAAGGGTAGGTTTATGGTAGAGTAGGTGTTAGGGTAGGTTTAGTgtagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079528 False 820 lncRNA 0.48 5 48031393 48034662
TU2079530 True 1197 lncRNA 0.47 3 48032367 48034391

Neighbor

gene id symbol gene type direction distance location
tmem198a LOC106582514 coding downstream 59262 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 197139 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 395753 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 477784 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 770927 47170403 ~ 47260466 (-)
LOC110501953 ihh coding upstream 23189 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 105099 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 470783 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 927550 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1435440 49470102 ~ 49480960 (-)
G1817540 NA non-coding downstream 572 48030015 ~ 48030821 (-)
G1817526 bin1 non-coding downstream 20747 47988167 ~ 48010646 (-)
G1817479 NA non-coding downstream 109220 47921536 ~ 47922173 (-)
G1817460 NA non-coding downstream 153556 47870020 ~ 47877837 (-)
G1817451 NA non-coding downstream 178752 47852361 ~ 47852641 (-)
G1817543 bin1 non-coding upstream 5368 48040030 ~ 48080797 (-)
G1817549 NA non-coding upstream 40503 48075165 ~ 48076165 (-)
G1817593 NA non-coding upstream 94780 48129442 ~ 48130249 (-)
G1817545 NA non-coding upstream 101745 48136407 ~ 48137488 (-)
G1817597 NA non-coding upstream 118396 48153058 ~ 48153868 (-)
G1817287 LOC106582526 other downstream 558009 47471294 ~ 47473384 (-)
G1816929 NA other downstream 629346 47400985 ~ 47402047 (-)
G1816841 NA other downstream 804747 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2190411 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3357505 44673447 ~ 44673888 (-)
G1817668 NA other upstream 234125 48268787 ~ 48291496 (-)
G1817836 NA other upstream 424364 48459026 ~ 48460040 (-)
G1817968 NA other upstream 434936 48469598 ~ 48470035 (-)
G1818059 NA other upstream 592702 48627364 ~ 48627846 (-)

Expression


Co-expression Network