XLOC_003731


Basic Information

Item Value
gene id XLOC_003731
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44317203 ~ 44318134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008701
CCGGACGCATGAACGCGCGCAGCGATAAAGCAGGAGCGCGCAGGAGTGTAGCGGCGCTCGTGACGTCACGCGCGTGCGATTATTTTGAACGGGGGTCAAGATGGCGGAGGAGAGCGGCTTAAAGCACCGGAATCACACCGGACAGAACTGCAGGAACAGCCGGTATAGAGAAGGTAAAAACGGCGGAGAAAAGCGCGAGTGTGCGCGTGTCTGATCAGCTGAGCGCGGGTCACGAGTGGCGCGAAGTGGCGTTTAACGGGAGCAGGCCAGTGATGCGCTGCGGTAAAACACAGCGATATAATGAATTAATTCAGCGTAAGAATTAAATAAACGACACTAGATTAAAGCTGTCGCTTATAATGAACGTTAGAGCTCGGAGAATAGGTGTGTGAGGAACCCAGAGATGCTGAGGAGCAGTGAGAGATCACGAGCGGACGGGAATTTCAGGAGAAACACAGTAAACGACGGAGAAATCGCTCCATCTCGATCACACTCAGGTGTTTTATTCTACACATTAATCACACATGGATAATATTCCGCTTTTCTGCCGTTTGACAGGCTGTTGTGGTGTAGAGATGGTGTTGTGTTGCTGGATGGTTGCGTGAAGGTTGTGTGACGGTTTCTCGAGATCACGTGATACACTTAgcgttttattatttaattggttatttttggttattgtgtgtgtgtgtgtgttatgtaagCTATTCTCCTGTACTGTCATTAACTCTATCCTCTTAAGACCCAAATGTGTACTTTacctgcatttttt
>TCONS_00008702
CGCATGAACGCGCGCAGCGATAAAGCAGGAGCGCGCAGGAGTGTAGCGGCGCTCGTGACGTCACGCGCGTGCGATTATTTTGAACGGGGGTCAAGATGGCGGAGGAGAGCGGCTTAAAGCACCGGAATCACACCGGACAGAACTGCAGGAACAGCCGGTATAGAGAAGGTGTGTGAGGAACCCAGAGATGCTGAGGAGCAGTGAGAGATCACGAGCGGACGGGAATTTCAGGAGAAACACAGTAAACGACGGAGAAATCGCTCCATCTCGATCACACTCAGGTGTTTTATTCTACACATTAATCACACATGGATAATATTCCGCTTTTCTGCCGTTTGACAGGCTGTTGTGGTGTAGAGATGGTGTTGTGTTGCTGGATGGTTGCGTGAAGGTTGTGTGACGGTTTCTCGAGATCACGTGATACACTTAgcgttttattatttaattggttatttttggttattgtgtgtgtgtgtgtgttatgtaagCTATTCTCCTGTACTGTCATTAACTCTATCCTCTTAAGACCCAAATGTGTACTTTacctgcatttttt

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0061980 regulatory RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008701 False 772 lncRNA 0.48 2 44317203 44318134
TCONS_00008702 True 556 lncRNA 0.47 3 44317208 44318134

Neighbor

gene id symbol gene type direction distance location
XLOC_003730 NA coding upstream 2793 44311334 ~ 44314410 (+)
XLOC_003729 HNRNPLL coding upstream 8171 44300548 ~ 44309032 (+)
XLOC_003727 NA coding upstream 120332 44163330 ~ 44196871 (+)
XLOC_003726 FO704721.1 coding upstream 178932 44135351 ~ 44138271 (+)
XLOC_003725 FP016005.2 coding upstream 292325 44024762 ~ 44024878 (+)
XLOC_003732 CABZ01100185.1 coding downstream 6627 44324761 ~ 44335322 (+)
XLOC_003733 CABZ01100187.1 coding downstream 17532 44335666 ~ 44335780 (+)
XLOC_003734 srsf7b coding downstream 38370 44356504 ~ 44363032 (+)
XLOC_003735 NA coding downstream 50993 44369127 ~ 44375182 (+)
XLOC_003736 NA coding downstream 66790 44384924 ~ 44391541 (+)
XLOC_003369 CR854846.2 misc upstream 28194121 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31605207 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31622940 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31631604 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31637175 12679732 ~ 12680028 (+)
XLOC_003724 NA non-coding upstream 366543 43943882 ~ 43950660 (+)
XLOC_003723 NA non-coding upstream 494350 43821555 ~ 43822853 (+)
XLOC_003737 NA non-coding downstream 76201 44394335 ~ 44399370 (+)

Expression


Co-expression Network