Gene
RNA
| Item | Value |
|---|---|
| gene id | G1818136 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 48773696 ~ 48779451 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: collagen EMF1-alpha-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2080285 | True | 1017 | lncRNA | 0.40 | 4 | 48773696 | 48779451 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502188 | LOC106582504 | coding | downstream | 127775 | 48505445 ~ 48645921 (-) |
| LOC110501956 | itgav | coding | downstream | 553654 | 48139761 ~ 48220042 (-) |
| LOC110501953 | ihh | coding | downstream | 709243 | 48057851 ~ 48064453 (-) |
| tmem198a | LOC106582514 | coding | downstream | 801565 | 47897057 ~ 47972131 (-) |
| ptprna | LOC106582506 | coding | downstream | 939442 | 47733219 ~ 47834254 (-) |
| LOC118943644 | NA | coding | upstream | 182761 | 48962212 ~ 48964633 (-) |
| LOC118943599 | NA | coding | upstream | 690651 | 49470102 ~ 49480960 (-) |
| prkag3b | LOC106592041 | coding | upstream | 1343437 | 50122888 ~ 50243945 (-) |
| si:ch211-67e16.4 | LOC106582542 | coding | upstream | 1680643 | 50460094 ~ 50465680 (-) |
| si:ch211-67e16.3 | LOC106582540 | coding | upstream | 1692296 | 50471747 ~ 50484670 (-) |
| G1818122 | NA | non-coding | downstream | 8337 | 48765064 ~ 48765359 (-) |
| G1818120 | NA | non-coding | downstream | 12429 | 48759355 ~ 48761267 (-) |
| G1818110 | NA | non-coding | downstream | 21911 | 48751494 ~ 48751785 (-) |
| G1818106 | NA | non-coding | downstream | 27903 | 48745498 ~ 48745793 (-) |
| G1818085 | NA | non-coding | downstream | 93530 | 48679918 ~ 48680166 (-) |
| G1818144 | NA | non-coding | upstream | 1778 | 48781229 ~ 48781506 (-) |
| G1818197 | NA | non-coding | upstream | 73119 | 48852570 ~ 48852810 (-) |
| G1818218 | NA | non-coding | upstream | 103509 | 48882960 ~ 48883186 (-) |
| G1818227 | NA | non-coding | upstream | 109552 | 48889003 ~ 48889251 (-) |
| G1818232 | NA | non-coding | upstream | 115026 | 48894477 ~ 48894916 (-) |
| G1818059 | NA | other | downstream | 145850 | 48627364 ~ 48627846 (-) |
| G1817968 | NA | other | downstream | 303661 | 48469598 ~ 48470035 (-) |
| G1817836 | NA | other | downstream | 313656 | 48459026 ~ 48460040 (-) |
| G1817668 | NA | other | downstream | 482200 | 48268787 ~ 48291496 (-) |
| G1818393 | NA | other | upstream | 346063 | 49125514 ~ 49126117 (-) |
| G1818417 | NA | other | upstream | 386300 | 49165751 ~ 49166367 (-) |
| G1818802 | NA | other | upstream | 938181 | 49717632 ~ 49719378 (-) |
| G1819189 | NA | other | upstream | 1430023 | 50137937 ~ 50219233 (-) |
| G1819250 | NA | other | upstream | 1522350 | 50301801 ~ 50305038 (-) |
