XLOC_003732 (CABZ01100185.1)


Basic Information

Item Value
gene id XLOC_003732
gene name CABZ01100185.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44324761 ~ 44335322 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007203
tttcagtcTCTGATGTTTCTGATCCGGGACTGGAGTTACCCGTATGAGCATCCTTACGGTCTGGAGGGAGGAAACCAGTTCCTGGAGAAGCGTCTGCagGTAACGCAGAATCAGCACGAGGAGCTGCAGAGCGTCAGGAAACACATCCACTCCTGCTTCTCCAGCATCAGCTGCTTCCTGCTGCCGCACCCGGGGCTCAGAGTGGCCACTAACCCACGCTTCGATGGACGCTTAcggg
>TCONS_00007204
tttcagtcTCTGATGTTTCTGATCCGGGACTGGAGTTACCCGTATGAGCATCCTTACGGTCTGGAGGGAGGAAACCAGTTCCTGGAGAAGCGTCTGCagGTAACGCAGAATCAGCACGAGGAGCTGCAGAGCGTCAGGAAACACATCCACTCCTGCTTCTCCAGCATCAGCTGCTTCCTGCTGCCGCACCCGGGGCTCAGAGTGGCCACTAACCCACGCTTCGATGGACGCTTAcgggCCCTGCATGAGTTATATTTTCAggaattgtgtgtgtttgtgtgtttgtgtgtttgtgtgtgtttgtgtgttttaattttaattatgttccagatgattgtcagggttctgccactctggtcttgtaaattcttgttttggtggcagagctcagACACTACCCATGtgttgtcctgtttctgtctctgtgtgcgcgcgcaaacactgatatatatatatatatgtatgtgtgtgtgtgtgtgtgtgtgtgtgcaggtgtgtggCGGCGAGCGTCCCTACATGTCTCCGTCTGCTCTGGATCTCCGCCATGGTGAGctgaagcaggtgtgtgtgtgtcagttccGCTCCGTCAAGAAGATGGGTGGAGAAGAGTTCAGCCGACGCTACCAGGAGCAGCTGGAGCAGGAGCTGGAGGAGTGCTACGCTAGCTTTAGCAAACACAACCAGGGCAAGAACATCTTTCTAGCGGCGCGTACGCCGGCGGCGCTGCTCGCCCTGATGCTGCTGCTGTACGCGTCGGCGCTGATAGCGGGCTGTGTGGGCATCAGTACACTAGCGGTGCTCTGTGACCTGCTGCTAGCCGCCGCGCTGCTCTCGCTCTGCGTCTGGACCTACAGCAGATACTCCGGAGAGTTCCGCGAGATCGGCGCCGCCATCGACCGTCTGGCCGAGACACTCTGGGAGCAGAGGACGCCCAGGAAGGTCCTCTCCAAGCTGATGGAGGTGTTGCGGAGCCGGCTGCGGCTGAAGCCCACCCCCAGACAGAGACTGCCCTCCAATAACAACCTCAAGAAGAGGAAGTAG
>TCONS_00008432
tttcagtcTCTGATGTTTCTGATCCGGGACTGGAGTTACCCGTATGAGCATCCTTACGGTCTGGAGGGAGGAAACCAGTTCCTGGAGAAGCGTCTGCagGTAACGCAGAATCAGCACGAGGAGCTGCAGAGCGTCAGGAAACACATCCACTCCTGCTTCTCCAGCATCAGCTGCTTCCTGCTGCCGCACCCGGGGCTCAGAGTGGCCACTAACCCACGCTTCGATGGACGCTTAcgggCCCTGCATGAGTTATATTTTCAggaattgtgtgtgtttgtgtgtttgtgtgtttgtgtgtgtttgtgtgtaaaaaaaaagagtgtagCAAAGCCTACTGCGAACGAATTTGAGGACTACAAAAACAtacatccaggctaTCTCTCACAAGCTGAATtaccgaatcagcatatgaatttcggtgctacTGGTGTAGCGAcgaggacGAAACACACTCAAAACGCGCGCAGTACAGCGCACCCGactctGATTTGTgtgtgtggCGGCGAGCGTCCCTACATGTCTCCGTCTGCTCTGGATCTCCGCCATGGTGAGctgaagcaggtgtgtgtgtgtcagttccGCTCCGTCAAGAAGATGGGTGGAGAAGAGTTCAGCCGACGCTACCAGGAGCAGCTGGAGCAGGAGCTGGAGGAGTGCTACGCTAGCTTTAGCAAACACAACCAGGGCAAGAACATCTTTCTAGCGGCGCGTACGCCGGCGGCGCTGCTCGCCCTGATGCTGCTGCTGTACGCGTCGGCGCTGATAGCGGGCTGTGTGGGCATCAGTACACTAGCGGTGCTCTGTGACCTGCTGCTAGCCGCCGCGCTGCTCTCGCTCTGCGTCTGGACCTACAGCAGATACTCCGGAGAGTTCCGCGAGATCGGCGCCGCCATCGACCGTCTGGCCGAGACACTCTGGGAGCAGAGGACGCCCAGGAAGGTCCTCTCCAAGCTGATGGAGGTGTTGCGGAGCCGGCTGCGGCTGAAGCCCACCCCCAGACAGAGACTGCCCTCCAATAACAACCTCAAGAAGAGGAAGTAGATCCGCGTCTGCGCTGACGTCACTTCCTGCAGACGCTGAGCGCCAGCAGTGCTACGGTAACACTAGCGGCGTTAGCAGAGCTAGCGCTGAACTCAGAGACTCTCTGCTGCTGCGCTCCTCCACCCATCCACACGCTGATCTCTGTACAGATTTTAAACTCCAGCATGACCATCCACAGCGTTTTCTACACGCTGCTTTTGTAGCAGGACAAACCATGGAGTCATCCTCATCTGCAGgactaccacacacacacacacacacacacacacacacacacacacacacacacacttagtttTATACGTCTCCATTCCTCTGCTCTGAGCTTCATCATTCCGGAATGTTCAGTCGTCTTCATCATGatgtttctttaatttattttggaatttGATTAAAATGGGTCACTGTACA
>TCONS_00008431
tttcagtcTCTGATGTTTCTGATCCGGGACTGGAGTTACCCGTATGAGCATCCTTACGGTCTGGAGGGAGGAAACCAGTTCCTGGAGAAGCGTCTGCagGTAACGCAGAATCAGCACGAGGAGCTGCAGAGCGTCAGGAAACACATCCACTCCTGCTTCTCCAGCATCAGCTGCTTCCTGCTGCCGCACCCGGGGCTCAGAGTGGCCACTAACCCACGCTTCGATGGACGCTTAcgggCCCTGCATGAGTTATATTTTCAggaattgtttgATgttgtcccaacacaaattaaaaaaaataagttgtcccaatcAAATCTAAAGAtttgtgtagtttcagCAAAGCCTACTGCGAACGAATTTGAGGACTACAAAAACAtacatccaggctaTGAATtaccgaatcagcatatgaatttcggtgctacTGGTGTAGCGAcgaggacGAAACACACTCAAAACGCGCGCAGTACAGCGCACCCGgaaatgcagagGgtgtgtggCGGCGAGCGTCCCTACATGTCTCCGTCTGCTCTGGATCTCCGCCATGGTGAGctgaagcaggtgtgtgtgtgtcagttccGCTCCGTCAAGAAGATGGGTGGAGAAGAGTTCAGCCGACGCTACCAGGAGCAGCTGGAGCAGGAGCTGGAGGAGTGCTACGCTAGCTTTAGCAAACACAACCAGGGCAAGAACATCTTTCTAGCGGCGCGTACGCCGGCGGCGCTGCTCGCCCTGATGCTGCTGCTGTACGCGTCGGCGCTGATAGCGGGCTGTGTGGGCATCAGTACACTAGCGGTGCTCTGTGACCTGCTGCTAGCCGCCGCGCTGCTCTCGCTCTGCGTCTGGACCTACAGCAGATACTCCGGAGAGTTCCGCGAGATCGGCGCCGCCATCGACCGTCTGGCCGAGACACTCTGGGAGCAGAGGACGCCCAGGAAGGTCCTCTCCAAGCTGATGGAGGTGTTGCGGAGCCGGCTGCGGCTGAAGCCCACCCCCAGACAGAGACTGCCCTCCAATAACAACCTCAAGAAGAGGAAGTAGATCCGCGTCTGCGCTGACGTCACTTCCTGCAGACGCTGAGCGCCAGCAGTGCTACGGTAACACTAGCGGCGTTAGCAGAGCTAGCGCTGAACTCAGAGACTCTCTGCTGCTGCGCTCCTCCACCCATCCACACGCTGATCTCTGTACAGATTTTAAACTCCAGCATGACCATCCACAGCGTTTTCTACACGCTGCTTTTGTAGCAGGACAAACCATGGAGTCATCCTCATCTGCAGgactaccacacacacacacacacacacacacacacacacacacacacacacacacttagtttTATACGTCTCCATTCCTCTGCTCTGAGCTTCATCATTCCGGAATGTTCAGTCGTCTTCATCATGatgtttctttaatttattttggaatttGATTAAAATGGGTCACTGTACA
>TCONS_00007205
gtgcaggtgtgtggCGGCGAGCGTCCCTACATGTCTCCGTCTGCTCTGGATCTCCGCCATGGTGAGctgaagcaggtgtgtgtgtgtcagttccGCTCCGTCAAGAAGATGGGTGGAGAAGAGTTCAGCCGACGCTACCAGGAGCAGCTGGAGCAGGAGCTGGAGGAGTGCTACGCTAGCTTTAGCAAACACAACCAGGGCAAGAACATCTTTCTAGCGGCGCGTACGCCGGCGGCGCTGCTCGCCCTGATGCTGCTGCTGTACGCGTCGGCGCTGATAGCGGGCTGTGTGGGCATCAGTACACTAGCGGTGCTCTGTGACCTGCTGCTAGCCGCCGCGCTGCTCTCGCTCTGCGTCTGGACCTACAGCAGATACTCCGGAGAGTTCCGCGAGATCGGCGCCGCCATCGACCGTCTGGCCGAGACACTCTGGGAGCAGAGGACGCCCAGGAAGGTCCTCTCCAAGCTGATGGAGGTGTTGCGGAGCCGGCTGCGGCTGAAGCCCACCCCCAGACAGAGACTGCCCTCCAATAACAACCTCAAGAAGAGGAAGTAGATCCGCGTCTGCGCTGACGTCACTTCCTGCAGACGCTGAGCGCCAGCAGTGCTACGGTAACACTAGCGGCGTTAGCAGAGCTAGCGCTGAACTCAGAGACTCTCTGCTGCTGCGCTCCTCCACCCATCCACACGCTGATCTCTGTACAGATTTTAAACTCCAGCATGACCATCCACAGCGTTTTCTACACGCTGCTTTTGTAGCAGGACAAACCATGGAGTCATCCTCATCTGCAGgactaccacacacacacacacacacacacacacacacacacacacacacacacacttagtttTATACGTCTCCATTCCTCTGCTCTGAGCTTCATCATTCCGGAATGTTCAGTCGTCTTCATCATGatgtttctttaatttattttggaatttGATTAAAATGGGTCACTGTACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000068484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007203 False 238 processed_transcript 0.57 2 44324761 44326292
TCONS_00007204 False 1041 processed_transcript 0.56 7 44324761 44334911
TCONS_00008432 False 1452 lncRNA 0.54 10 44324761 44335322
TCONS_00008431 False 1455 lncRNA 0.54 14 44324761 44335322
TCONS_00007205 True 966 processed_transcript 0.56 3 44328774 44335322

Neighbor

gene id symbol gene type direction distance location
XLOC_003731 NA coding upstream 6627 44317203 ~ 44318134 (+)
XLOC_003730 NA coding upstream 10351 44311334 ~ 44314410 (+)
XLOC_003729 HNRNPLL coding upstream 15729 44300548 ~ 44309032 (+)
XLOC_003727 NA coding upstream 127890 44163330 ~ 44196871 (+)
XLOC_003726 FO704721.1 coding upstream 186490 44135351 ~ 44138271 (+)
XLOC_003733 CABZ01100187.1 coding downstream 344 44335666 ~ 44335780 (+)
XLOC_003734 srsf7b coding downstream 21182 44356504 ~ 44363032 (+)
XLOC_003735 NA coding downstream 33805 44369127 ~ 44375182 (+)
XLOC_003736 NA coding downstream 49602 44384924 ~ 44391541 (+)
XLOC_003737 NA coding downstream 59013 44394335 ~ 44399370 (+)
XLOC_003369 CR854846.2 misc upstream 28201679 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31612765 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31630498 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31639162 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31644733 12679732 ~ 12680028 (+)
XLOC_003725 FP016005.2 non-coding upstream 299883 44024762 ~ 44024878 (+)
XLOC_003724 NA non-coding upstream 374101 43943882 ~ 43950660 (+)
XLOC_003738 NA non-coding downstream 112366 44447688 ~ 44450363 (+)

Expression


Co-expression Network