XLOC_037324 (sec22a)


Basic Information

Item Value
gene id XLOC_037324
gene name sec22a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37850360 ~ 37862563 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073434
AGACCGTCACAGAGCCGAATGTTTTCCGAAAATATACGAAGAGAAACCGGGACTGTGCCGAAGTTGTTACGAGTTTAGCCGAAGCTGTGTCGTACGTAAGCAAAAACCGTCCGCTATGAGACCCGCAGGAAGAGCTCAACGATCAAGATAGTATATCAACAAAATAACTCAAAAGGGTTATAATgtcttaatatatttttaatcggCTCATGTCAGTAGGTATGTACACTGAAAGACTGTGTTAATGCTTGCAATAAGTGTCGCTTAGTGTCTAGTTAAGTATCTTGCTATGGTAGCAGTACAGCCATATAACGCTACTGCACATCATTGTAAATCAATGCGATGAATAGTTTTAAAGAATAGCTTGACCTTAAAATATTATAAGCCTGTATTATTGTAGATATGGGGTTCTGTAGCGCATAAGACAATCACCAAACGTGATATGATGACAATAAGTCAGCAAACATGCTAATATTATTAGCTTAGCACAGTGTGCACCAGATGTCATGAGTCCACGTACATAGAGCTGAATGATATTATAGAATTCGTAAAATATGTCTAGATTTTGTATGTAATTTTTTAGATTATTCTAGCTAGCAGAAAACTAAGAGGGTGGTAAATGGGCCATtatatgcagtgaatgccctaaATATCCTGTTCTTCCAGGTGTCAACTGAGCTTTCTGTAAGATGTCTATGGTCCTGTTTGCCTCAGTGGTGAGAGTGAGGGACGGTTTGCCTCTCTCAGCCTCCACAGACTATGAACTGGATAAAGGAATTCAGGAGACAAAGAAACATCTCAAGGTCCTGTCCAAAAAACTCAGCCAGTTTCCTGATCGCTGCTCACTCAGATCTGGACTATACAATATCAACTTCACAAGCTCTCTCGGAGTTGGGTACTTGATGGTTTGCACAGAGAACTATCCCAATGTCCTGGCCTTCAGCTTCTTAGATGAGCTTCAGAGAGAGTTCATAGTCACGTATGACACCAAGCGGATCAACAGTGCTTTGAGGCCTTTCTCTTTCATTGAGTTTGATAACTTCATTCGGAAAACCAAGCTGCGTTACAACAGCCCACGTTCGCTCTCTACCAAGATTAATCTGGCCGACATGCAGACCGAGATCAAGCTCCGGCCTCCTTATCAGCTCTCGGCGGAGGACATTGGATCAATCAACGGCTTCTCACAACACAAGGAGTCTAAATATAAAGGCATAGCTCCTAATCAAATGTTGGAGGCTGTCACCCTGTCGGGTATTGTCGCCTGTGTCCTAAGCATCCTGTGTGGCGCTCTTAATTTACTGCGGGGAGTCCATGCGATTGAAAGCGTATTGCAGAACGACGATGAAGACTTTAATTACGTAATTGCTTTTTTCCTTGGAACCGCAGCGTGTTTGTATCAGTGTTACTTATTCGCCTACTTCTCAGTCTGGAGAAACATCAAGTCATTCCTGGCCTTCGCTCTGATCTGCCTGTGTAATATGTATCTGTATGAACTCCGTAACCTGTGGCAGATCCTCTTTCACGTGACAGTGGGAGCGTTCATCACTCTGCAGATCCACCTGAGACGACCGCAGGGCAAAGCACCTGACTATAATGTTTGACCCCCTTGAACTCTTCAAGACTGTGTAATATAGCCCAACATGGCAACTATGAATCTCTTCCTGGCCCGTTTGAGGACATGCAGTATGGATTTTAAAAGGTTTACAAACGGTTTTGAAAAATGTCCTGCTGTTTCACATTTAGCTACTGTTCTGGTTAAAGCAGAAGGTTCATGAAGTTGATTTCataaaagcattcattcattcatgcatacatattttttattattattgttagatgATTCTGATGTGCACAATACATTTTCCAATAAGGAGTTTTATTATTGATATCATATTTAAAGAGGCagctcatctaaaaatgaaaatattgtgttCTTGAATAAAGTTTATGTGGCTTTTTTCCATAAAATGAGTGATGACCATGGTCAGTCAaagataattattaaataaataaataaataaataaagtatgcaatttttttccaTACATTGATACACATTTTGCAGTAGGTGTAAAATGTTCTTGtataaaaatccaaaatcaaacaaaaagtgcttcagAGGTAGTTAATGTGTCAGTGCTCTTTAGAGATAAACAGCAAATTTAAAAGTCCAAGGCATATAAATGagtgaaaattattttaaaagcctTTAATAACATGGCTATTCCATAATAtttgttaccctgatgaaggcaagtgTTAGCCGAAATGCGTAGGTGCAGTTTTATGGAGTAGCCATGTTATTAaaggcttttaaaaacattttttcgaGTGCCTGGTACTTATAATTTTTCTGTTTAAgtgaaaaatgttgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcggAAGGGGCATTTTAGTCCTACTGAGTGAGTAACCACTGTAGTTTTTGTTAATAGTTTGAATGAACAATTTGAGTGAACAAATTTTTagaaatacagtgctcagcatatacaagtacatccctcacaaatctatcttttaaattaatatttttaataggaagctatacaatattatatttatacatatacattagattaatcagtactaACGCttaatctggagcttatctaacaaaataacttacaataacggtccaaaaactagtacatttaaatgtataagTTATAGACAAATATTTCATACAAACTTAAATAAAGAGGAAGAATCATAATaagcaaaaaatttaaaaaataagttgaaattttgtatgttgtaatgtttttgcaatatttagcttcaatttctaaacatattGGTGGCTATATTCTTGCCAACTAGCTGAcaacacacacgtatatataatgtcatttttttatttggaaaaaaaaatatcttgtgtTGAATAGACATATGCAACTAATAAACCTGACGTCTAGTTTTACGTTTATCTTCTTTGTTTGTCAGTGGCAATGCTTACCTATCAAATTACCTTATTAATTACCTTAAACTATTTATTCAAATATGTATTATGATTTAGCTCAAATCTTAAAAAGGAGAGGGGGATTAGAGAATTTCTGTATGTAAAACACTTCAGAAACAAAGGTCACTAAAAAGTGGGTGGGCACATTTGTGTTTTAGTGTTGTGAgataaacaggtaaaatgtgaaatataatattgcacacatacaaaaacatggTTGGCTGACATTTGTGGTCATTATTCCTTTTACTGTATGGCAAAAAGCAGCTTAAACATTTAGCTAAACATCTCATTTTGTGTCCTgccaaataaataacacaaataaaatgtttcttatctatctatcaatctatatATATGAAAGATAAAATGCAACATTACTGGCTTTTTCCACATACAGGTTTTGACTGTTTTATTTTGTCATATGCTTTCATAGATGCCTAATTtgagtgtcagtgtgtttgtggtcATTAGTCAGACGTCTCTGCTCTGAAAGCATAATCAGACGTGTTATTTATCAATCGTGTCTCTGCTGCCAGCAGGTGTGCTTCCTGAAAATGAATGCGCTTTGCTAAGAGGGAAATGGAACCACACTAATATTCagactctgttttttttttcctcctccccTCGGTGTTTGCTGCTTTTTGTCAACAGGTCTGTTCCGTGACCTTGCTGAGCAGTACAAACGAGTTATGTTTATTCTATTTCCATTTATCCGGCTAGTTTTCATTGTGCAAATGACAGGTTGTATGGATGATTGACAGATTAggggtcaactttttttttttattcctgtgaAGATctacgtttatttatttttttctctcctgaGAATCAATGATCAGAGATTGCATTTGCATTGCAAAGACTGCATGCTAAGTTTTGTACCTCAATGCTGTTAGCAGCAACAGTGCTGTGCACTTTGGCTCAATGTATGTTTGTACAAATAGAAAAGGCCCTAAAATCATCAGTAAAAGCCTACAATTTGTACAAAGGTGCttgtttagtttgtgtttttaatgcactttacacatttttgaccACAAATCTAGTCATAATTGTTTGGATTTTGTTCAATTGAGATGTATACATTGTCTGGTGAATAAATAAGTGTTCCTTTTATGCA
>TCONS_00073435
TGTTACGAGTTTAGCCGAAGCTGTGTCGTACGTAAGCAAAAACCGTCCGCTATGAGACCCGCAGGAAGAGCTCAACGATCAAGATAGTATATCAACAAAATAACTCAAAAGGGTTATAATgtcttaatatatttttaatcggCTCATGTCAGTAGGTGTCAACTGAGCTTTCTGTAAGATGTCTATGGTCCTGTTTGCCTCAGTGGTGAGAGTGAGGGACGGTTTGCCTCTCTCAGCCTCCACAGACTATGAACTGGATAAAGGAATTCAGGAGACAAAGAAACATCTCAAGGTCCTGTCCAAAAAACTCAGCCAGTTTCCTGATCGCTGCTCACTCAGATCTGGACTATACAATATCAACTTCACAAGCTCTCTCGGAGTTGGGTACTTGATGGTTTGCACAGAGAACTATCCCAATGTCCTGGCCTTCAGCTTCTTAGATGAGCTTCAGAGAGAGTTCATAGTCACGTATGACACCAAGCGGATCAACAGTGCTTTGAGGCCTTTCTCTTTCATTGAGTTTGATAACTTCATTCGGAAAACCAAGCTGCGTTACAACAGCCCACGTTCGCTCTCTACCAAGATTAATCTGGCCGACATGCAGACCGAGATCAAGCTCCGGCCTCCTTATCAGCTCTCGGCGGAGGACATTGGATCAATCAACGGCTTCTCACAACACAAGGAGTCTAAATATAAAGGCATAGCTCCTAATCAAATGTTGGAGGCTGTCACCCTGTCGGGTATTGTCGCCTGTGTCCTAAGCATCCTGTGTGGCGCTCTTAATTTACTGCGGGGAGTCCATGCGATTGAAAGCGTATTGCAGAACGACGATGAAGACTTTAATTACGTAATTGCTTTTTTCCTTGGAACCGCAGCGTGTTTGTATCAGTGTTACTTATTCGCCTACTTCTCAGTCTGGAGAAACATCAAGTCATTCCTGGCCTTCGCTCTGATCTGCCTGTGTAATATGTATCTGTATGAACTCCGTAACCTGTGGCAGATCCTCTTTCACGTGACAGTGGGAGCGTTCATCACTCTGCAGATCCACCTGAGACGACCGCAGGGCAAAGCACCTGACTATAATGTTTGACCCCCTTGAACTCTTCAAGACTGTGTAATATAGCCCAACATGGCAACTATGAATCTCTTCCTGGCCCGTTTGAGGACATGCAGTATGGATTTTAAAAGGTTTACAAACGGTTTTGAAAAATGTCCTGCTGTTTCACATTTAGCTACTGTTCTGGTTAAAGCAGAAGGTTCATGAAGTTGATTTCataaaagcattcattcattcatgcatacatattttttattattattgttagatgATTCTGATGTGCACAATACATTTTCCAATAAGGAGTTTTATTATTGATATCATATTTAAAGAGGCagctcatctaaaaatgaaaatattgtgttCTTGAATAAAGTTTATGTGGCTTTTTTCCATAAAATGAGTGATGACCATGGTCAGTCAaagataattattaaataaataaataaataaataaagtatgcaatttttttccaTACATTGATACACATTTTGCAGTAGGTGTAAAATGTTCTTGtataaaaatccaaaatcaaacaaaaa
>TCONS_00073436
GTGTCGTACGTAAGCAAAAACCGTCCGCTATGAGACCCGCAGGAAGAGCTCAACGATCAAGATAGTATATCAACAAAATAACTCAAAAGGGTTATAATgtcttaatatatttttaatcggCTCATGTCAGTGTCAACTGAGCTTTCTGTAAGATGTCTATGGTCCTGTTTGCCTCAGTGGTGAGAGTGAGGGACGGTTTGCCTCTCTCAGCCTCCACAGACTATGAACTGGATAAAGGAATTCAGGAGACAAAGAAACATCTCAAGGTCCTGTCCAAAAAACTCAGCCAGTTTCCTGATCGCTGCTCACTCAGATCTGGACTATACAATATCAACTTCACAAGCTCTCTCGGAGTTGGGTACTTGATGGTTTGCACAGAGAACTATCCCAATGTCCTGGCCTTCAGCTTCTTAGATGAGCTTCAGAGAGAGTTCATAGTCACGTATGACACCAAGCGGATCAACAGTGCTTTGAGGCCTTTCTCTTTCATTGAGTTTGATAACTTCATTCGGAAAACCAAGCTGCGTTACAACAGCCCACGTTCGCTCTCTACCAAGATTAATCTGGCCGACATGCAGACCGAGATCAAGCTCCGGCCTCCTTATCAGCTCTCGGCGGAGGACATTGGATCAATCAACGGCTTCTCACAACACAAGGAGTCTAAATATAAAGGCATAGCTCCTAATCAAATGTTGGAGGCTGTCACCCTGTCGGGTATTGTCGCCTGTGTCCTAAGCATCCTGTGTGGCGCTCTTAATTTACTGCGG

Function

symbol description
sec22a Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22A (SEC22 homolog A, vesicle trafficking protein).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3553 Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22A (SEC22 homolog A, vesicle trafficking protein).

Ensembl:

ensembl_id ENSDARG00000078328

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073434 False 4181 mRNA 0.36 6 37850360 37862563
TCONS_00073435 False 1600 mRNA 0.41 7 37850424 37860493
TCONS_00073436 True 767 mRNA 0.46 5 37850446 37856907

Neighbor

gene id symbol gene type direction distance location
XLOC_037323 pdia5 coding upstream 10010 37754845 ~ 37840350 (+)
XLOC_037322 NA coding upstream 342087 37506959 ~ 37508273 (+)
XLOC_037321 NA coding upstream 357446 37475147 ~ 37492914 (+)
XLOC_037319 slc49a4 coding upstream 397232 37366973 ~ 37453128 (+)
XLOC_037320 BX322793.1 coding upstream 438374 37411870 ~ 37411986 (+)
XLOC_037325 CU896658.1 coding downstream 14871 37877434 ~ 37877550 (+)
XLOC_037326 NA coding downstream 159327 38021890 ~ 38024061 (+)
XLOC_037327 stam2 coding downstream 180774 38043337 ~ 38065147 (+)
XLOC_037328 cacnb4a coding downstream 211519 38074082 ~ 38130085 (+)
XLOC_037329 nifk coding downstream 296007 38158570 ~ 38162095 (+)
XLOC_037317 BX548071.1 non-coding upstream 668803 37181440 ~ 37181557 (+)
XLOC_037315 NA non-coding upstream 858509 36991163 ~ 36991851 (+)
XLOC_037330 BX548038.1 non-coding downstream 297883 38160446 ~ 38160572 (+)
XLOC_037331 BX548038.2 non-coding downstream 298700 38161263 ~ 38161389 (+)
XLOC_037349 CR376853.1 non-coding downstream 924365 38786928 ~ 38787044 (+)

Expression


Co-expression Network