XLOC_037326


Basic Information

Item Value
gene id XLOC_037326
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38021890 ~ 38024061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075178
GATCTCGATTATCACATACAGCAAATGAACGCAGGGTGCGAATTACGCAGGGTTTCACTTCCTAATGAAGATTTTAACACGCAAGAAAGAGGATCGAAAGGGGTAGGAGTTCAGTATTCAAATAAAGTAGCCGCAAAAGTTAGTGCACTAAATCCTCTTTGCTTGCTTTAATAACAGTTTGTTGAACTTCTTGTCATTACTACACAAACATATCTGATAATGTTCAAATACAGGCTCCATTGAACACAATAAATTACTTGCGCGCTGTATAAATAGATAAGTCAAGTCATGTCCCCTCATGAATAAACTTTCAACTGATATTAGCCTCATTTGTGGAGCAAGTTATAGTAAAGCCAGTTGCCAATTGAAGTCAGCTGGTGATTTAAACGATTAAAAGTAAACTAAAGTTATCTGTAAGGTAAGGACTGGGATAACAAAAGTGACCCGATGAGTTTGCATTCTCCTTTATTTCCTAATTAGGAGCGATGTAAAGTGGGAAAGATTATGGCAGCCAAGCCCTCTGAGATACAGAAACACGTTTTGCAAATCAAACCGCTCATATCTACATCATTATGCACACAAGGATGGCTTTGTAGAAGTAATTAAATATACAAagtagtcatttgggatgcatcCTCGGGTGGGTAAAGTATCAGAGGACGGCAGAGGGAGTAATTGTGCGCCACTTTTCAGTTCATAAAAATACAAACCTCTGGATACATTTCGAGGGGGGCTAGAGGGGCATTGGCGCCTCTAATTAAGGCTGAATAACCCAGAGGAAATTAAAACGGTTATgaaatacagtattttaattaAGGACGACTGTATACGTTTCAAAGGTTTCAGCACTAGCTAATACAGTTCGATAATTCAGCGCATATCGTTACCTGTCGCCAAACAGTCGCGTTCGCCAGATGAGGAAACCATAACAACACGCGACCCTCGAGCGTTATGTCCACAAAACATCGTCACTTTACTATTTCTATCAAATGTGTCACAAAAACTCAAGTGTTTTAAAACTTAAGCCCTGACAACAATTGGCGTTCCCGCGAGACCAACTTCAAAAGACTGAAAAATGTAACGATTTATCAAAATTAATTCAAAACAAACCCCCCTAAATCGCTTTAAAATACTCCACCCACTCTCGAAGTCACTGTAGAATTCGTACACTGCTTAATATAGCCTTATTTCGACCGAATCATCGTGAACTGACCCCTCACCCATCACGCCAGACCTCCGCGTTTTCTTGACAGGAGCAAATAGTGTCCGCGAAAGTGTGGTTTGGCCAGAGCTGAGAGCGCGGAGCACGACTCCATGGTGCGCGCGCATTGATGCATTGATCCACGCAAGATGTACACCTGTGAATATGTGGTCGCAGCCCACTAGATGGTGATTACATGATCACGATTGCTGCGAAGACCTCAGCTTTCCGACGCTCCTGCATGGCAAGTTGCGTCAACCCGAGATGACCTCACAAAGTGTCCTTTGGTGACGGAGTCTTCATTCGTGCTGTGCAGATAGGGATCTCCAGTGCTCCTGATGCAGTAGCAGcaacatcatcatcaccatcagcGCTGGCGTCTGGATGAGGGATGAATTGTCACGCCACGAGAGCGTCAAATCCGACCTGCTTGGTCAGAGCCGCGTGCTGGAAGTGCCGGACAGGCTGCACGTCCTTCCCCTGCGGATTCTCAACACCCAAACCCATAGAATTGATTAAGCGTTATCATCCGTTTTGGTGCTTCTTCTCTTTGTATTGCCATTCAACCAAGTATGATCTTTAGACCCCGCCTTATGCACGGTCCTATTGGCTGCTCAAGTTGCCAATCAAGTGTTCTATTGGTCAATGTGAACGTCAGTACGTGGTGATTTGGATAAGTGGGCGGGTCTACCCACACAGCTGTATGTAGGGAAGCGTgaggaaaaaaatgtttgtttgtttgtttgcttttctaTTATTAGAGCAATTTAATATAACAGTAAGTAAATAACTGTTAcaaataatatgtattttgtcCAACACATTTCAGGAAAAATCGTAGGAATATAATGTCGTTGTTGACAAtttgcctatgtttaaaatcaaaatattaaaatatcctGCATGTTATAGTAATTTTTTCTTGTCTGGAATTACTTTGAACTAGGTGATTAAAGCTAAAGAAATGTACT

Function

GO:

id name namespace
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075178 True 2172 lncRNA 0.42 1 38021890 38024061

Neighbor

gene id symbol gene type direction distance location
XLOC_037325 CU896658.1 coding upstream 144340 37877434 ~ 37877550 (+)
XLOC_037324 sec22a coding upstream 159327 37850360 ~ 37862563 (+)
XLOC_037323 pdia5 coding upstream 181540 37754845 ~ 37840350 (+)
XLOC_037322 NA coding upstream 513617 37506959 ~ 37508273 (+)
XLOC_037321 NA coding upstream 528976 37475147 ~ 37492914 (+)
XLOC_037327 stam2 coding downstream 19276 38043337 ~ 38065147 (+)
XLOC_037328 cacnb4a coding downstream 50021 38074082 ~ 38130085 (+)
XLOC_037329 nifk coding downstream 134509 38158570 ~ 38162095 (+)
XLOC_037330 BX548038.1 coding downstream 136385 38160446 ~ 38160572 (+)
XLOC_037331 BX548038.2 coding downstream 137202 38161263 ~ 38161389 (+)
XLOC_037320 BX322793.1 non-coding upstream 609904 37411870 ~ 37411986 (+)
XLOC_037317 BX548071.1 non-coding upstream 840333 37181440 ~ 37181557 (+)
XLOC_037349 CR376853.1 non-coding downstream 762867 38786928 ~ 38787044 (+)
XLOC_037351 CR812481.1 non-coding downstream 986371 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1839192 39863253 ~ 39865672 (+)

Expression


Co-expression Network