G1819911


Basic Information

Item Value
gene id G1819911
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50570853 ~ 50572801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2082641
CTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaagGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaaggtcAATACATCTAGTTGGATTCCCTACTAAGGTCAATACatctagttgattccctactaaggtcaatacattt
>TU2082642
CTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaaggtcAATACATCTAGTTGGATTCCCTACTAAGGTCAATACatctagttgattccctactaaggtcaatacattt
>TU2082644
GTCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGgtcGATACatctagttgattccctactaaggtcAATACATCTATTGGATTCCCTACTAAGGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaaggtcAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACatctagttgattccctactaaggtcaatacattt
>TU2082640
CTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaagGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaaggtcAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCAATAC
>TU2082643
CTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACatctagttgattccctactaaggtcGATACatctagttgattccctactaaggtcAATACATCTAGTTGGATTCCCTACTAAGgtcGATACatctagttgattccctactaaggtcAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCGATACATCTAGTTGGATTCCCTACTAAGGTCAATACATCTAGTTGGATTCCCTACTAAGGTCAATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2082641 False 291 lncRNA 0.39 3 50570853 50572380
TU2082642 False 200 lncRNA 0.39 2 50570853 50571670
TU2082644 False 278 lncRNA 0.39 4 50570853 50572801
TU2082640 False 412 lncRNA 0.40 2 50571319 50572380
TU2082643 True 413 lncRNA 0.40 2 50571319 50572380

Neighbor

gene id symbol gene type direction distance location
LOC118943619 NA coding downstream 37105 50521227 ~ 50533748 (-)
cd28 LOC100136275 coding downstream 73999 50495067 ~ 50496991 (-)
si:ch211-67e16.3 LOC106582540 coding downstream 86183 50471747 ~ 50484670 (-)
si:ch211-67e16.4 LOC106582542 coding downstream 105173 50460094 ~ 50465680 (-)
prkag3b LOC106592041 coding downstream 326908 50122888 ~ 50243945 (-)
tmem237a LOC105009128 coding upstream 147896 50720697 ~ 50753131 (-)
LOC110502197 LOC106582575 coding upstream 230850 50803651 ~ 50853194 (-)
als2a NA coding upstream 299654 50872455 ~ 50960735 (-)
LOC118943621 NA coding upstream 464663 51037464 ~ 51041332 (-)
sumo-1 sumo-1 coding upstream 468917 51041718 ~ 51052960 (-)
G1819894 NA non-coding downstream 60875 50507517 ~ 50509978 (-)
G1819893 NA non-coding downstream 67212 50499771 ~ 50503641 (-)
G1819975 NA non-coding upstream 184827 50757628 ~ 50758387 (-)
G1819976 NA non-coding upstream 188423 50761224 ~ 50798171 (-)
G1819981 NA non-coding upstream 212169 50784970 ~ 50788056 (-)
G1819986 NA non-coding upstream 241684 50814485 ~ 50814841 (-)
G1819993 NA non-coding upstream 247909 50820710 ~ 50822135 (-)
G1819250 NA other downstream 265815 50301801 ~ 50305038 (-)
G1819189 NA other downstream 356967 50137937 ~ 50219233 (-)
G1818802 NA other downstream 851475 49717632 ~ 49719378 (-)
G1820012 NA other upstream 323771 50896572 ~ 50897153 (-)
G1820053 LOC106582548 other upstream 450637 51023438 ~ 51026181 (-)
carf LOC106582551 other upstream 510188 51059254 ~ 51085922 (-)
G1820212 NA other upstream 853602 51426403 ~ 51427042 (-)
LOC110501977 LOC106562996 other upstream 929057 51501853 ~ 51504398 (-)

Expression


Co-expression Network