G1820053 (LOC106582548)


Basic Information

Item Value
gene id G1820053
gene name LOC106582548
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 51023438 ~ 51026181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2082854
gcaAGTTATGTATACTGCAGTATCTTGCATAATTCCACTGCTACACACATGCATATTCTATCCTATTTCTAAATGCAATGTCTGTCAGTCTTACTGTGCCACAAAAAATATGCATGATTGTCACTGGTTGGCTGTGAATGCAGTATAAATTCATCAGGTCAAACGTGTTCTTTCTTCAACTGAAGCCAGTAGCGTTCGTTATATGATGTCGTCGTAGCTCTATAGTGTGAATAGGCTCATTCATTGTATACAATTGTTACAGGATCACCTCTGTAAATGAAAAACACTTTCTTACAAACACCCAGGGGCTCTACATGATTCAGAATTTGACCTACGTGCCGGTAACGATACGTTAGGAACGATCCGTTTTCAGATGATCATTACACAACATAGTGTCCGTATGAGCTTGTTTTCGTTTATTGGCTCCCGAAAGGATTCTGATCGTCCAGTTCGGGAGGGGCTGCACGAGCCACGGACCCCCGTATTGAACTCATCATAGGTCTTATTCCATGCGTTATGTTctgatcccaaatggcaccctactcccttaatagtgcactactatatgggccctggccaaaaagtagtgcactaaatagggcgtagggtgccatttgggacacagtctatTATATTATCATTCCCTGGTTGCTGGTACTCGGTCTGTCATTGATGTTCATACTGTCGTTTCTCCCTCGTTGCTGGTACTCAGTCTCTTATAGAACCTGCGCCATGACTGCAGTGTTTTGCCTGACCATATCCAAAACCCGGAGGTGATGCCGACAATCAAAGTCATCAAATACTTGATCATGAAGACAGTAAAGTCTGGGGTCATGAGCGCAAAATTGTTTGGTGGACAAGGCACAGCAAACCTTTTACAGATCTGTGTATGCCAAGTTTTCTCCCACTGTTCACGGAACGCCTGCTCGTAGAAGTAACAGGCTATGATGATCGTGGCAGGAACGGTGTAGAGGACACTGAACACTCCGATCCGAACCATAAGCTTCTCCAGCTTCTCCGTCTTGGTTCCGTCGTGTTTCATGATAGTTCTGATCCGGAACAGAGAGACAAATCCTGCGAGAAGGAACGACGTCCCTATAAACAAGTAGACAAAAAGAGGTGCCAGAACAAAACCACGCAAGGAATCCACACTGTTGATGCCCACATAACACACCCCTGTGAGTAGATCTCCATCCACCTGTCCCATGGCCAGGATGGTAATCGTTTTAACAGCGGGTACAGCCCAGGCAGCGAGGTGGAAATACGGAGAGTTGGCCTCAATGGCTTCATGCCCCCACTTCATGCCGGCAGAGAGGAACCATGTGAaggacagaatcacccaccataTAGAGCTGGCCATGCCGAAGAAATACAGAATCATAAAGAGAATTGTACAGCCCTCCTTCTTAGTTCCCTGAGCTACAGTCTTATAACCAGTATCCTTGAATTTATCAACACATACCACTTTCTCCTCTAAGATGAACCCGGCGGCGTAGGCAGTGGCCACCATGAAGTAACAGCCGGAGAGGAAGATGATAGGCCTCTCCGGGTAGCAGAACCGTCTCATGTCCACTAGATAGGTCAGCACTGTGAACAGGGTGCTCACACAGCACAGAATGGACCAGATCCCGACCCAGAGCCGGCCAaacttcacctcctcctcccgaAAATACATCAACCCGTTGATCTTGGTGGGCTCGCAAGGCGCGCCGCAGTCCTTAACCCCCATAAAATAGTAGTTCAGATAGTTGGGCACCTGCAGTTGTAGCGGGCAGGAGAACTCCTGTTGCTGGCTCGGTCGACCCATATTGGGGGGTAGAGTCATGAGCTCAGGAAGGTAGGGTGTTGGGTACGAGGTGGCGCTACCGGTGTCCGAGGTGTTTTGACCCACACAGATCTCTCCCGCTCCGTGGACGGGGAAGTTCTCACAGCGGAGCCTCTCCGGCCACTGGAAACCGAACTTATTCATCAGGGCCTCGCAGCCTTGTCTCGCCCGCTCACACAGAGACCTGCACGGCGGGATAGCCTGCTCGAGCACCGTACAGACCGGCGCGTACATAGAACACAGGAAGAACTTCAGGTCCATGGAACACTGGACCTTGACGAGCGGGTAGAACTGGTGCACCTCAAGCCCGGCGTCTTCCTGGTTCGTGTGACCGAGGAGATTCGGCATGATGGTCTGGTTATAGGCGATGTCCGTACAGAGGGGTATGGAGATGGGCTGGCAGAAGCCGTGTTCGGGTATAGAGATGCCCTTCTCACCGTGGGACTGGCCTGAACACAATGGGAAAAGCGCACACAAGATCACCAGCGCACAACGCGCCGTGCCTGCCCAATGAGCCGATTCCACCAtagttaaaataaaaaacattgaatAAAATCCTAAATGTAAAAAATGCTCCTTTTCAAAAACTCGAGATTCATATATACCAGAAAAATGATCTCTTACATATAAAACGGTTTTCGCTTTTCTGTCTCGAGCCTACACTGCTTGTACAAGTTCACAAAACCGTGCGCATGGTCTCCGTATTCTCATGACTTCTTGGTCTCAGGTCTTTGTAAATAGCTGTAGAAAAAGGTACTCATTTGAGTTAGAAAAATGTTCTCCTTTGCGTTTCCTTCTCGGGATCAGCAGCGTAAAAAGTTATTCACTGTCTCCTTAGTTAAAATGAAGGTTCCACAGCGCGCATCTCCTCGCTTGTGTTG

Function

NR:

description
frizzled-7-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2082854 True 2706 TUCP 0.48 2 51023438 51026181

Neighbor

gene id symbol gene type direction distance location
als2a NA coding downstream 62703 50872455 ~ 50960735 (-)
LOC110502197 LOC106582575 coding downstream 170244 50803651 ~ 50853194 (-)
tmem237a LOC105009128 coding downstream 270307 50720697 ~ 50753131 (-)
LOC118943619 NA coding downstream 489690 50521227 ~ 50533748 (-)
cd28 LOC100136275 coding downstream 526584 50495067 ~ 50496991 (-)
LOC118943621 NA coding upstream 11283 51037464 ~ 51041332 (-)
sumo-1 sumo-1 coding upstream 15537 51041718 ~ 51052960 (-)
LOC118943622 NA coding upstream 28783 51054964 ~ 51057512 (-)
carf LOC106582551 coding upstream 33073 51059254 ~ 51085922 (-)
LOC118943624 NA coding upstream 35475 51061656 ~ 51063049 (-)
G1820033 NA non-coding downstream 55573 50967404 ~ 50967865 (-)
G1820019 NA non-coding downstream 100794 50919568 ~ 50922644 (-)
G1820011 NA non-coding downstream 131798 50891279 ~ 50891640 (-)
G1820008 NA non-coding downstream 141194 50881406 ~ 50882244 (-)
G1819985 NA non-coding downstream 153557 50861421 ~ 50869881 (-)
G1820075 NA non-coding upstream 40646 51066827 ~ 51070429 (-)
G1820077 NA non-coding upstream 63633 51089814 ~ 51090146 (-)
G1820059 NA non-coding upstream 165628 51191809 ~ 51195296 (-)
bmpr2b bmpr2 non-coding upstream 170741 51196922 ~ 51376938 (-)
G1820012 NA other downstream 126285 50896572 ~ 50897153 (-)
si:ch211-67e16.4 LOC106582542 other downstream 559676 50460094 ~ 50465680 (-)
G1819250 NA other downstream 718400 50301801 ~ 50305038 (-)
G1819189 NA other downstream 809552 50137937 ~ 50219233 (-)
G1820212 NA other upstream 400222 51426403 ~ 51427042 (-)
LOC110501977 LOC106562996 other upstream 475677 51501853 ~ 51504398 (-)
myo10l3 LOC106582557 other upstream 508791 51510785 ~ 51699385 (-)
G1820680 cssa21h3orf70 other upstream 932899 51959080 ~ 51959638 (-)

Expression


Co-expression Network