XLOC_037333 (tfcp2l1)


Basic Information

Item Value
gene id XLOC_037333
gene name tfcp2l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38292919 ~ 38311750 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073452
GCAGCTGATCTGCCATTAAACGCTCGCTGTCTGCAGGTGGCGGACGGACACTCGCGGGTCAGCTGACCGTCGGCCGTCACGCGGGATAAAAGACCGCCGACTCGGACACTTCTGGAGAGACTTTGTGGCTCTCACGGTTCCTTCACCGGCGACCTCGCGTTTTACTGTACTCTTATTTCTGGGATAGGAAAGTAGCAGAGCTGGAGAGTATGCTGTTTTGGCACAGCCATCCTGAAAACTACCAGCAGCACGCGCAAAACACTTACATCAGAGATGCTCTTGCTCCGTTTCTCAAGCATGAAGAAGAACATCAGGCTGCAGAGATCGGAGCATCTCCTTTTCATTATGTGCTTTGTGCAGCCACTTCTCCAGCTGTGAAACTCCATGATGAAACACTCACATATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACGGGAAGCTGGTGGAGTATACAGATGTAAGCAGCAAATATGTAAAGGTAGGTTAAGGGAATGATGAAATAGTatttggatgcagcctttatgatgcaagctgagattgcatcactcagcgatgcaagaTCAGACACactgcactcaatggagtgagtgacgtcactgtgacgggtagggttaggggtgtgcTTAGGTAAGCGCATTAAAAAgcgctcagattgcactgcaccaggtctgcattcagacccctctCGAATGATGCCAGTATATGATCTTGTTTCAGCGCatgacttgtttgtatatttctatatttttgtctttatggATCATTTTTTATTAGTTCAACTTAGAAATAAACAGTTTTAGAATATTATGAAATGTAAACTAAGTCAACATTATG
>TCONS_00073453
GTCTGCAGGTGGCGGACGGACACTCGCGGGTCAGCTGACCGTCGGCCGTCACGCGGGATAAAAGACCGCCGACTCGGACACTTCTGGAGAGACTTTGTGGCTCTCACGGTTCCTTCACCGGCGACCTCGCGTTTTACTGTACTCTTATTTCTGGGATAGGAAAGTAGCAGAGCTGGAGAGTATGCTGTTTTGGCACAGCCATCCTGAAAACTACCAGCAGCACGCGCAAAACACTTACATCAGAGATGCTCTTGCTCCGTTTCTCAAGCATGAAGAAGAACATCAGGCTGCAGAGATCGGAGCATCTCCTTTTCATTATGTGCTTTGTGCAGCCACTTCTCCAGCTGTGAAACTCCATGATGAAACACTCACATATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACGGGAAGCTGGTGGAGTATACAGATGTAAGCAGCAAATATGTAAAGAGCATTGTGCGTGTTGTTTTTCATGACCGGCGGCTGCAGTACACAGAGCATCAGCAGCTGGAGGGATGGAGGTGGAACCGGCCAGGAGACAGGATTCTGGATATAGATATCCCACTGTCAGTGGGCATAATAGAGCCTCACGCTCACCCACTGCAGCTCAACACCATCGAATTCCTCTGGGATCCTGACAAAAATGCCTCTGTCTTCATTCAGGTTAATTGCATTAGCACAGAGTTCACTCCTAGAAAACACGGTGGAGAGAAAGGTGTCCCTTTTCGGATTCAGATTGACACATTCACAGCCAGTGCACATGGAGAATACACTGAACACATGTGCTCCGCCAGCTGCCAGGTCAAAGTCTTTAAGCCTAAAGGTGCAGATCGCAAGCTCAAGACTGACAGAGAGAAGATCGAGAAGAAGAGTCTTCAGGATAAAGAAAAATACCAACTGTCCTATAAAACGACTGTGTTGACTGAGtgCTCCCCTTGGCCCGAAGCCCCATCCATCAGCAGCACGAGCAACACTCCATCACCTGCTTATCACAGCGCTCACACTTCCTACAGCTTTCCAGAGGAAAACTGCTCTCCAGACCAGCATGGAGAGCCACTTCTGCCCAGCTGCTCTGATCACCTGTTGCCTTCGTCCTCCACACAGGACACACAGCAGTGGCTCCATCGTAACAGGTTCTCCTCTTTCTGCAGGCTCTTCTCTGGCTTCTCAGGTTCAGATCTGCTAAAAATGGGTCGAGATGACTTCATTCAGATCTGTGGTCCTGCTGATGGCATTCGTCTTTTCAATGCAATCAAAGGAAGGTGCATCCAGCCACGTCTCACTGTCTATGTCTCCCAGCTGCAGAACAGGATCCAGCCGCACACAAAAGCAGTGGGTGACGGCGCGAATACATGGCGTATATAGACAAGGGCCGAAGGGGATACATGTCTTGGTTTCAGATGAGATGGTGCAGAACTTTACAGAGGAGGCAAGCTTCACTATCAGCACTGTAAAAGATGACAGGAATGAAGGCTATCATGTTGTACTGAAGTGACTTGACGACTGAAGCATGGTCTGTAGCTTCTCTTTACGATACTGGACTGTTTTTCAGCTAAATATCACCTGGTGGAATGTGACACGAATGAATGTGGATGAGGTTTGTATGATGACTGTGCCTTACTCTCAGAGAGAATCCTCTGGACTGTTTTACTGGAAATTGATTCAAATGtttattgtgtttgtttatacatatttttgttCATATGTGTTTTATAGTAATTATTTTATCATGTGAAATGAAATTCTTGAAGTCTTTTCAAAGCATCGTCtgacatttattttctattttagagTTTTCAAAATagtaaaaagttaaatatatttaatgtattatgtTGTATGTTTCTAGAAAAAAACTCTAAttcaaaatgtagcattttaaaacGTTGATAAAGTCTCCTCTAACTGGAAATAATCTGTTTCATATTGGACAGGTTCTGTTGATCAGAatgaaaatattgaaataaaagtctttgCTCA
>TCONS_00073454
GTCTGCAGGTGGCGGACGGACACTCGCGGGTCAGCTGACCGTCGGCCGTCACGCGGGATAAAAGACCGCCGACTCGGACACTTCTGGAGAGACTTTGTGGCTCTCACGGTTCCTTCACCGGCGACCTCGCGTTTTACTGTACTCTTATTTCTGGGATAGGAAAGTAGCAGAGCTGGAGAGTATGCTGTTTTGGCACAGCCATCCTGAAAACTACCAGCAGCACGCGCAAAACACTTACATCAGAGATGCTCTTGCTCCGTTTCTCAAGCATGAAGAAGAACATCAGGCTGCAGAGATCGGAGCATCTCCTTTTCATTATGTGCTTTGTGCAGCCACTTCTCCAGCTGTGAAACTCCATGATGAAACACTCACATATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACGGGAAGCTGGTGGAGTATACAGATGTAAGCAGCAAATATGTAAAGAGCATTGTGCGTGTTGTTTTTCATGACCGGCGGCTGCAGTACACAGAGCATCAGCAGCTGGAGGGATGGAGGTGGAACCGGCCAGGAGACAGGATTCTGGATATAGATATCCCACTGTCAGTGGGCATAATAGAGCCTCACGCTCACCCACTGCAGCTCAACACCATCGAATTCCTCTGGGATCCTGACAAAAATGCCTCTGTCTTCATTCAGGTTAATTGCATTAGCACAGAGTTCACTCCTAGAAAACACGGTGGAGAGAAAGGTGTCCCTTTTCGGATTCAGATTGACACATTCACAGCCAGTGCACATGGAGAATACACTGAACACATGTGCTCCGCCAGCTGCCAGGTCAAAGTCTTTAAGCCTAAAGGTGCAGATCGCAAGCTCAAGACTGACAGAGAGAAGATCGAGAAGAAGAGTCTTCAGGATAAAGAAAAATACCAACTGTCCTATAAAACGACTGTGTTGACTGAGtgCTCCCCTTGGCCCGAAGCCCCATCCATCAGCAGCACGAGCAACACTCCATCACCTGCTTATCACAGCGCTCACACTTCCTACAGCTTTCCAGAGGAAAACTGCTCTCCAGACCAGCATGGAGAGCCACTTCTGCCCAGCTGCTCTGATCACCTGTTGCCTTCGTCCTCCACACAGGACACACAGCAGTGGCTCCATCGTAACAGGTTCTCCTCTTTCTGCAGGCTCTTCTCTGGCTTCTCAGGTTCAGATCTGCTAAAAATGGGTCGAGATGACTTCATTCAGATCTGTGGTCCTGCTGATGGCATTCGTCTTTTCAATGCAATCAAAGGAAGGTGCATCCAGCCACGTCTCACTGTCTATGTCTCCCAGCTGCAGAACAGGATCCAGCCGCACACAAAAGCAGTGGGTGACGGCGTGTACCATGCACTCTACCTAGAGGACCTAACTGTCCTTGAGCTCACTGAGAAGATAGCCAATCTATATAATGTTCCCTCACAGCGAATACATGGCGTATATAGACAAGGGCCGAAGGGGATACATGTCTTGGTTTCAGATGAGATGGTGCAGAACTTTACAGAGGAGGCAAGCTTCACTATCAGCACTGTAAAAGATGACAGGAATGAAGGCTATCATGTTGTACTGAAGTGACTTGACGACTGAAGCATGGTCTGTAGCTTCTCTTTACGATACTGGACTGTTTTTCAGCTAAATATCACCTGGTGGAATGTGACACGAATGAATGTGGATGAGGTTTGTATGATGACTGTGCCTTACTCTCAGAGAGAATCCTCTGGACTGTTTTACTGGAAATTGATTCAAATGtttattgtgtttgtttatacatatttttgttCATATGTGTTTTATAGTAATTATTTTATCATGTGAAATGAAATTCTTGAAGTCTTTTCAAAGCATCGTCtgacatttattttctattttagagTTTTCAAAATagtaaaaagttaaatatatttaatgtattatgtTGTATGTTTCTAGAAAAAAACTCTAAttcaaaatgtagcattttaaaacGTTGATAAAGTCTCCTCTAACTGGAAATAATCTGTTTCATATTGGACAGGTTCTGTTGATCAGAatgaaaatattgaaataaaagtctttgCTCAGGA
>TCONS_00073455
GTTATCCTGTGGCCGCAAATGTGCTGAAGTCATTCAGAGCAGAGGCCTGTACACTTCCTACTAAGTGCTGACTGTTACAACCTTCAGAAAATTTTGTTGTCATCTTTTTCCATGCTACAGTCATTGTTGTTCTCTAATATTGATTAGTgtgttttttgcaaaataatgttttttttttttttaaatgtcttggttATTTTGGGTGTTCTGGTAGCATGGTATAGACGAAACAAAAACACCTTCAACTGTTGAGCAGTGAAGATGACATTATTTCAGAATGgttcaattatttataaattgttctctaattttgatcgcctgtgtatattattgttaatttaaaactagattatatacagttttatttccacacacacacgaaaaaatGTGTTATGGTTTCAGGTTCAGATCTGCTAAAAATGGGTCGAGATGACTTCATTCAGATCTGTGGTCCTGCTGATGGCATTCGTCTTTTCAATGCAATCAAAGGAAGGTGCATCCAGCCACGTCTCACTGTCTATGTCTCCCAGCTGCAGAACAGGATCCAGCCGCACACAAAAGCAGTGGGTGACGGCGTGTACCATGCACTCTACCTAGAGGACCTAACTGTCCTTGAGCTCACTGAGAAGATAGCCAATCTATATAATGTTCCCTCACAGCGAATACATGGCGTATATAGACAAGGGCCGAAGGGGATACATGTCTTGGTTTCAGATGAG

Function

symbol description
tfcp2l1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in hypophysis. Orthologous to human TFCP2L1 (transcription factor CP2 like 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-58 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in hypophysis. Orthologous to human TFCP2L1 (transcription factor CP2 like 1).

Ensembl:

ensembl_id ENSDARG00000029497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073452 False 844 lncRNA 0.45 3 38292919 38296930
TCONS_00073453 False 1990 nonsense_mediated_decay 0.45 15 38292947 38311747
TCONS_00073454 False 2076 mRNA 0.45 15 38292947 38311750
TCONS_00073455 True 719 lncRNA 0.39 3 38307686 38308570

Neighbor

gene id symbol gene type direction distance location
XLOC_037332 clasp1a coding upstream 1110 38163876 ~ 38291809 (+)
XLOC_037329 nifk coding upstream 130824 38158570 ~ 38162095 (+)
XLOC_037331 BX548038.2 coding upstream 131530 38161263 ~ 38161389 (+)
XLOC_037330 BX548038.1 coding upstream 132347 38160446 ~ 38160572 (+)
XLOC_037328 cacnb4a coding upstream 162834 38074082 ~ 38130085 (+)
XLOC_037334 ddx18 coding downstream 2716 38314466 ~ 38352220 (+)
XLOC_037335 plcd4b coding downstream 58122 38369872 ~ 38390990 (+)
XLOC_037336 bcs1l coding downstream 88162 38399912 ~ 38407176 (+)
XLOC_037337 cyp27a7 coding downstream 97241 38408991 ~ 38419140 (+)
XLOC_037338 cyp27a1.2 coding downstream 108262 38420012 ~ 38425491 (+)
XLOC_037326 NA non-coding upstream 268858 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 non-coding upstream 415369 37877434 ~ 37877550 (+)
XLOC_037322 NA non-coding upstream 784646 37506959 ~ 37508273 (+)
XLOC_037349 CR376853.1 non-coding downstream 475178 38786928 ~ 38787044 (+)
XLOC_037351 CR812481.1 non-coding downstream 698682 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1551503 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1825747 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 1966397 40278147 ~ 40278263 (+)

Expression


Co-expression Network