XLOC_037336 (bcs1l)


Basic Information

Item Value
gene id XLOC_037336
gene name bcs1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38399912 ~ 38407176 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073459
GTCATTCAATCATTCTGCAATGATAGAGAACGCTTGCTTTCATGCACTTATATTTGATTGGCTTCTTTTTCCTTTGTTTTAAGCTAACAGGAGAAAAAGGTTGTTTGTAAATACGTGACCTTATTTACACTATCGTAAGTAAAGTGacgtttaattttgtatttatttaactgATAAGAAATACCTCTTCTTTGACAGCTTGATATGAAGTTCGGTCAGTCTTAAGGTTCTCTTGAAAATGAAGATAAAAATGCGTTAGCCTTATTTGCTGTGAAAGCAGGATGCATATTTGTCCTGACTGAAAAAAATAGTACCTGAAGTTACCTTCACCATGACCCTGTCAGATTTTATTGGAGCCCTGAAGGACAATCCTTATTTTGGGGCAGGATTTGGACTAGTTGGTGTTGGCACGGCACTTGCAGTTGCCAGAAAAGGAGCACAGGTTGGCATGATTTTCTTTCGGAGGCATTACATGATCACTCTGGAGGTTCcaagcaaagataaaagttacCACTGGCTCTTAAGCTGGATCACCAAACAtgccaaacacacacagcatCTGAGTGTAGAGACCTCATACATGCAGCACGAGAGTGGGAAAGTCCACACACAGTTTGACTTCCACCCAAGCCCAGGCAACCACATCATATGGTATGGAAGGAAGTGGATCAGAGTGGAGCGGGTCAGGGAGAAGCAGATGATGGACCTGCACACTGGAACGCCCTGGGAGTCTGTCACCTTTACTGCTTTGGGAAGAGACCGCCAGACATTCTTCAACATACTTCAGGAAGCACGTGAACTTGCTTTAAAGCAGGAAGAGGGCCGGACAGTGATGTACACTGCAATGGGAGCGGAGTGGAGACCCTTTGGTTTTCCAAGGAGAAGACGGCCGCTGTCTTCAGTAGTGCTGGAGAGTGGAGTGGCGGAGAGGATTGTGGATGATGTAAAGGAGTTCATAGGCAATCCTAAGTGGTACACTGACAGAGGCATTCCATACAGGAGGGGATATTTGCTGTATGGCCCACCTGGCTGTGGAAAGAGCAGCTTTATAACTGCTCTGGCAGGTGAGCTGGGCTACAGCATCTGTCTGATGAGTCTGAGCGACCGCAGCCTGTCTGATGATCGCCTCAATCACCTGCTAAGCGTCGCTCCGCAGCAGAGCATCATCCTGCTGGAGGACGTAGATGCAGCCTTTGTCAGCCGCGAGCTGCTGCCCACCGAGAATCCACTGGCCTATCAAGGTATGGGACGGCTTACGTTTAGTGGGCTTCTGAATGCTCTGGATGGAGTGGCATCTTCAGAGGCCCGAATTGTCTTCATGACTACTAATTTCATTGAGAGACTCGATCCGGCTCTCGTCCGCCCCGGCCGTGTGGATCTGAAGCAGTATGTTGGCCACTGCTCGCACTGGCAGCTGACTCAGATGTTTCGGAGGTTTTACCCTCAGGAGTCTGCAGCCGAGGCAGATCACTTCTCTGAACAAGCACTGGCCGCTCACACAGATCTTAGCGCCGCTCAGGTACAAGGACACTTCATGCTCTACaagactgacccagccggggctatCAAAAACATTGCAGAGATTAAGGACTGAAGATTTTCATAGACTTTTGTTTGAAGAGCAGTCAAGAGCAACAGTTCTTGCTCACAAATTAATGCTCAAAAATTGGAGTAATAAAATAAGACTTGTGGaa
>TCONS_00073460
ATTCAATCATTCTGCAATGATAGAGAACGCTTGCTTTCATGCACTTATATTTGATTGGCTTCTTTTTCCTTTGTTTTAAGCTAACAGGAGAAAAAGGTTGTTTGTAAATACGTGACCTTATTTACACTATCGATTTGGACTAGTTGGTGTTGGCACGGCACTTGCAGTTGCCAGAAAAGGAGCACAGGTTGGCATGATTTTCTTTCGGAGGCATTACATGATCACTCTGGAGGTTCcaagcaaagataaaagttacCACTGGCTCTTAAGCTGGATCACCAAACAtgccaaacacacacagcatCTGAGTGTAGAGACCTCATACATGCAGCACGAGAGTGGGAAAGTCCACACACAGTTTGACTTCCACCCAAGCCCAGGCAACCACATCATATGGTATGGAAGGAAGTGGATCAGAGTGGAGCGGGTCAGGGAGAAGCAGATGATGGACCTGCACACTGGAACGCCCTGGGAGTCTGTCACCTTTACTGCTTTGGGAAGAGACCGCCAGACATTCTTCAACATACTTCAGGAAGCACGTGAACTTGCTTTAAAGCAGGAAGAGGGCCGGACAGTGATGTACACTGCAATGGGAGCGGAGTGGAGACCCTTTGGTTTTCCAAGGAGAAGACGGCCGCTGTCTTCAGTAGTGCTGGAGAGTGGAGTGGCGGAGAGGATTGTGGATGATGTAAAGGAGTTCATAGGCAATCCTAAGTGGTACACTGACAGAGGCATTCCATACAGGAGGGGATATTTGCTGTATGGCCCACCTGGCTGTGGAAAGAGCAGCTTTAT

Function

symbol description
bcs1l Predicted to enable ATP binding activity. Predicted to be involved in mitochondrial respiratory chain complex III assembly and protein insertion into mitochondrial inner membrane from matrix. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Bjornstad syndrome; GRACILE syndrome; and mitochondrial complex III deficiency nuclear type 1. Orthologous to human BCS1L (BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone).

GO:

id name namespace
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0032979 protein insertion into mitochondrial inner membrane from matrix biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-938 Predicted to enable ATP binding activity. Predicted to be involved in mitochondrial respiratory chain complex III assembly and protein insertion into mitochondrial inner membrane from matrix. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Bjornstad syndrome; GRACILE syndrome; and mitochondrial complex III deficiency nuclear type 1. Orthologous to human BCS1L (BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone).

Ensembl:

ensembl_id ENSDARG00000012295

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073459 False 1694 mRNA 0.47 7 38399912 38407176
TCONS_00073460 True 795 mRNA 0.47 5 38399915 38403471

Neighbor

gene id symbol gene type direction distance location
XLOC_037335 plcd4b coding upstream 8922 38369872 ~ 38390990 (+)
XLOC_037334 ddx18 coding upstream 47692 38314466 ~ 38352220 (+)
XLOC_037333 tfcp2l1 coding upstream 88162 38292919 ~ 38311750 (+)
XLOC_037332 clasp1a coding upstream 108103 38163876 ~ 38291809 (+)
XLOC_037331 BX548038.2 coding upstream 238523 38161263 ~ 38161389 (+)
XLOC_037337 cyp27a7 coding downstream 1815 38408991 ~ 38419140 (+)
XLOC_037338 cyp27a1.2 coding downstream 12836 38420012 ~ 38425491 (+)
XLOC_037339 CYP27A1 coding downstream 20396 38427572 ~ 38433916 (+)
XLOC_037340 cyp27a1.4 coding downstream 39328 38446504 ~ 38457413 (+)
XLOC_037341 mcm3ap coding downstream 50630 38457806 ~ 38500391 (+)
XLOC_037330 BX548038.1 non-coding upstream 239340 38160446 ~ 38160572 (+)
XLOC_037326 NA non-coding upstream 375851 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 non-coding upstream 522362 37877434 ~ 37877550 (+)
XLOC_037322 NA non-coding upstream 891639 37506959 ~ 37508273 (+)
XLOC_037349 CR376853.1 non-coding downstream 379752 38786928 ~ 38787044 (+)
XLOC_037351 CR812481.1 non-coding downstream 603256 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1456077 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1730321 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 1870971 40278147 ~ 40278263 (+)

Expression


Co-expression Network