XLOC_037342 (lmln)


Basic Information

Item Value
gene id XLOC_037342
gene name lmln
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38502524 ~ 38516727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073471
tgtaTCGTCTCTATGTTCGGGCAGCTCTGGGTTTATGGGTGAAGCCGGTTTAATGAACTGCCCGTTGGAATTTCTCTCGGAAGATCCTTCGGTTTTCCGAGTAATTGAGGGTCTTTATGCATCATGACAGGACGGAGATATGAAAGATAAAGCACGGGTAGAATGATGGCGTCAGGATGGCGGCAGCCTCGATCAGTTATCGGAGCCGCTTTATTCTTTAacaccaccatcatcatcttcatcagcaCCGGCGCACAGACGCACACCTGTGACCACAAAGTGCCCCTTCACACAGAGGTGATTCATAAGGTCTTTTTGAAGCCAGATAGACTGACCAAAAGAAGCACTGACCAGCAGTTAAACATTAAGATAGAGTACGACTCCAGCTTGGATGGGTTAGATGAAGCCAAAAGCAGCCTTGTGAAGGACAAGCTCCTCCCACAGGCTATTGATTATCTTCAGAAGGCTTTCAGGGTTCGCAGACAGTCGGGTCCGATATTACTTAGCAGGCAATGTGCAACCAATCAGTACCTTCGGAAAAGAGACGATCCTCACCGCTACTGTCAGGGACCATGTGCTAACGTAAccaaatgtggcccagttgttGTTCCTGAACATCATTTGCAGcaatgcAGGGTTTGCAGTGAGTCTGGAAAGTCCTGTGGCCCCGTCGGTCCTCCTGATGGCGAGGGGGTGGCGAGGGCTGATTTTGTGCTGTACGTGAGTGCGATGACCACTGAGCGTTGTGGACAGGAGAACATCGTAGCCTATGCAGCGTATTGTCAGCTTGAGTCTGAACTAGACAGACCCATTGCTGGATATGCCAATCTGTGTCCCAATATGATCTCTACTCAACCTCAGGAGTTTGAAGGGATGCTGTCCACGGTTAAACACGAGATCATACATGCTCTGGGGTTTTCTGCTGGACTCTTTGCCTTTTATCATGATGATGGTGGAAAACCTCTGACGCCACGTTCTGCAAGTGGTCTTCCTGCTTATAATGAAAGTTTAGGGTTATATCAGTGGAGTGATAAAGTCATTAAAAGAGCAACTCGACTGTGGGACATCCGAGGAGGCCAAATGGTTAGACACACTGTCCATCTTCTGGCCACCCCACGTGTAGTGGAGGAAGCAAGAAGACATTTTAATTGCCCCATTCTAGAGGGCATGGAACTAGAGAACCAGGGTGGTGCTGGGACAGAGCTTAACCACTGGGAAAAACGCCTGCTGGAGaacGAGGCAATGACTGGATCTCACACACAGAACAGAGTGTTTTCCAGAATTACCTTGGCCATAATGGAGGATACTGGGTGGTACAGGGCCAATTACAGTATGGCGGAGAACCTGCAGTGGGGAAGAGGTTTGGGGTGTGACTTTGTGATGAAAAGCTGCAAATTCTGGATAGACCAGCATCGCCATAAGAGGCCGACGCTGAGCCCATACTGTGATTCTGTGAGAAGCGCACCTCTGCAGCTCACCTGCAGGCAGGACCAGCTGGCAGTGGCTGTTTGCAACCTACAGAAGTTTTCTAATGCGCTTCCAGCAGAGTATCAGTACTTTGACCATATTCCTGGCGTCCCCAAGGAGGATTTGTCTGCGTATGGAGGGGCTGTAGAAATCGCAGACTACTGTCCTTTTAGCCAGGAGTTTAGCTGGCATGTGGGAGGTGAATATCAGCGCAGCTCTTACTGCAGGATTCAGGAGAACCAACCAGCCACATGGAGAAACTATGGGGCAGAACAATATGGCCCAGGATCAGTTTGTCTGTACCAGAAATCTGCATTTGTTATGGAGCAGTGCACCAAACGAATGACTTACCCAGACTGGGGCAGTGGATGCTATAAGGTGTCTTGTACAGCTCAAGGGTTGCTGGTTTGGGTGCAGAACGAAACCTTTCTATGTGTTCGGACTGGTCAGGTGATCAGCGTGAGTATACGGATGAATGAATGGGTGTACAACGGTCAGCTCATCTGCCCAGCCTGCTCTGACTTCTGCAGCAACTGCCCTCTGCCTCATCTGATACCTCCTCTAAACACTACCAAGAGTGCTCCAATAGATCCTTGTTCCAGATCTTCCTTTTTAGTGGTGAACTTATGGCAGCTCCTGTTAACTCTCACTCCACTGCTGATCGGCTTCCTCCTCTGTGGCTGGGACTGA
>TCONS_00073472
AGGTGATTCATAAGGTCTTTTTGAAGCCAGATAGACTGACCAAAAGAAGCACTGACCAGCAGTTAAACATTAAGATAGAGTACGACTCCAGCTTGGATGGGTTAGATGAAGCCAAAAGCAGCCTTGTGAAGGACAAGCTCCTCCCACAGGCTATTGATTATCTTCAGAAGGCTTTCAGGGTTCGCAGACAGTCGGGTCCGATATTACTTAGCAGGCAATGTGCAACCAATCAGTACCTTCGGAAAAGAGACGATCCTCACCGCTACTGTCAGGGACCATGTGCTAACGTAAccaaatgtggcccagttgttGTTCCTGAACATCATTTGCAGcaatgcAGGGTTTGCAGTGAGTCTGGAAAGTCCTGTGGCCCCGTCGGTCCTCCTGATGGCGAGGGGGTGGCGAGGGCTGATTTTGTGCTGTACGTGAGTGCGATGACCACTGAGCGTTGTGGACAGGAGAACATCGTAGCCTATGCAGCGTATTGTCAGCTTGAGTCTGAACTAGACAGACCCATTGCTGGATATGCCAATCTGTGTCCCAATATGATCTCTACTCAACCTCAGGAGTTTGAAGGGATGCTGTCCACGGTTAAACACGAGATCATACATGCTCTGGGGTTTTCTGCTGGACTCTTTGCCTTTTATCATGATGATGGTGGAAAACCTCTGACGCCACGTTCTGCAAGTGGTCTTCCTGCTTATAATGAAAGTTTAGGGTTATATCAGTGGAGTGATAAAGTCATTAAAAGAGCAACTCGACTGTGGGACATCCGAGGAGGCCAAATGGTTAGACACACTGTCCATCTTCTGGCCACCCCACGTGTAGTGGAGGAAGCAAGAAGACATTTTAATTGCCCCATTCTAGAGGGCATGGAACTAGAGAACCAGGGTGGTGCTGGGACAGAGCTTAACCACTGGGAAAAACGCCTGCTGGAGaacGAGGCAATGACTGGATCTCACACACAGAACAGAGTGTTTTCCAGAATTACCTTGGCCATAATGGAGGATACTGGGTGGTACAGGGCCAATTACAGTATGGCGGAGAACCTGCAGTGGGGAAGAGGTTTGGGGTGTGACTTTGTGATGAAAAGCTGCAAATTCTGGATAGACCAGCATCGCCATAAGCCGACGCTGAGCCCATACTGTGATTCTGTGAGAAGCGCACCTCTGCAGCTCACCTGCAGGCAGGACCAGCTGGCAGTGGCTGTTTGCAACCTACAGAAGTTTTCTAATGCGCTTCCAGCAGAGTATCAGTACTTTGACCATATTCCTGGCGTCCCCAAGGAGGATTTGTCTGCGTATGGAGGGGCTGTAGAAATCGCAGACTACTGTCCTTTTAGCCAGGAGTTTAGCTGGCATGTGGGAGGTGAATATCAGCGCAGCTCTTACTGCAGGATTCAGGAGAACCAACCAGCCACATGGAGAAACTATGGGGCAGAACAATATGGCCCAGGATCAGTTTGTCTGTACCAGAAATCTGCATTTGTTATGGAGCAGTGCACCAAACGAATGACTTACCCAGACTGGGGCAGTGGATGCTATAAGGTGTCTTGTACAGCTCAAGGGTTGCTGGTTTGGGTGCAGAACGAAACCTTTCTATGTGTTCGGACTGGTCAGGTGATCAGCGTGAGTATACGGATGAATGAATGGGTGTACAACGGTCAGCTCATCTGCCCAGCCTGCTCTGACTTCTGCAGCAACTGCCCTCTGCCTCATCTGATACCTCCTCTAAACACTACCAAGAGTGCTCCAATAGATCCTTGTTCCAGATCTTCCTTTTTAGTGGTGAACTTATGGCAGCTCCTGTTAACTCTCACTCCACTGCTGATCGGCTTCCTCCTCTGTGGCTGGGACTGA

Function

symbol description
lmln Predicted to enable peptidase activity. Acts upstream of or within melanocyte migration; neuromast deposition; and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in caudal fin; fin bud; neuromast; olfactory pit; and somite. Orthologous to human LMLN (leishmanolysin like peptidase).

GO:

id name namespace
GO:0097324 melanocyte migration biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0048885 neuromast deposition biological_process
GO:0006508 proteolysis biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081104-298 Predicted to enable peptidase activity. Acts upstream of or within melanocyte migration; neuromast deposition; and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in caudal fin; fin bud; neuromast; olfactory pit; and somite. Orthologous to human LMLN (leishmanolysin like peptidase).

Ensembl:

ensembl_id ENSDARG00000061265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073471 False 2157 mRNA 0.50 17 38502524 38516727
TCONS_00073472 True 1859 mRNA 0.49 16 38503233 38516727

Neighbor

gene id symbol gene type direction distance location
XLOC_037341 mcm3ap coding upstream 2133 38457806 ~ 38500391 (+)
XLOC_037340 cyp27a1.4 coding upstream 45111 38446504 ~ 38457413 (+)
XLOC_037339 CYP27A1 coding upstream 68608 38427572 ~ 38433916 (+)
XLOC_037338 cyp27a1.2 coding upstream 77033 38420012 ~ 38425491 (+)
XLOC_037337 cyp27a7 coding upstream 83384 38408991 ~ 38419140 (+)
XLOC_037343 osbpl11 coding downstream 8154 38524881 ~ 38556328 (+)
XLOC_037344 snx4 coding downstream 71354 38588081 ~ 38621202 (+)
XLOC_037345 znf148 coding downstream 107751 38624478 ~ 38641307 (+)
XLOC_037346 slc12a8 coding downstream 128249 38644976 ~ 38682237 (+)
XLOC_037347 heg1 coding downstream 168144 38684871 ~ 38707510 (+)
XLOC_037331 BX548038.2 non-coding upstream 341135 38161263 ~ 38161389 (+)
XLOC_037330 BX548038.1 non-coding upstream 341952 38160446 ~ 38160572 (+)
XLOC_037326 NA non-coding upstream 478463 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 non-coding upstream 624974 37877434 ~ 37877550 (+)
XLOC_037322 NA non-coding upstream 994251 37506959 ~ 37508273 (+)
XLOC_037349 CR376853.1 non-coding downstream 270201 38786928 ~ 38787044 (+)
XLOC_037351 CR812481.1 non-coding downstream 493705 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1346526 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1620770 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 1761420 40278147 ~ 40278263 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location