XLOC_037343 (osbpl11)


Basic Information

Item Value
gene id XLOC_037343
gene name osbpl11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38524881 ~ 38556328 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073473
aaaataaaacatcactaTATACCAAATATCAGTGGAGTAAACTATATTTATATGTCCGATATGTAATACGTAGCATTATTAGAGTCAAATAGTTCAGCTTCTGTCGTTTCATTAATTTGCTTTTCCTGTCACATGACGCGGGGTCGCGAATGACTTCACGCTCTGTCATGGCTGCACGAGACATAAACATGCCAGTGGTTCTTTAATTCAGAGTATTAAACGAGAGAGATGGTTAAAACCGCTGTCATAACAGTCCACTTCGCCGTATGAAACCGGTTACTGTGTTTTCTGCCTGGCAGGTGAAGTGTTAGATCGCTGTTGTAGTTCATAGAAAGGGTCCAATCATGCAGACTGAAGCCGTGCTGGAGCATCACAGCGGCTCACAGAGTTCAGGCAGGACGGGCTCCAAATCCTGGCAGTACAGTGACCTAATGGAAAAAGTGGATGGATATTTGATGAAATACACCAATCTGGTGACTGGATGGCAGTATCGATATTTTGTGCTCAACAATGAGGCTGGTCTGCTAGAATACTTTGTGAATGAGCAGTCCAGGAATCAGAAACCCCGGGGCTCGCTGCCATTAGGCGGAGCAGTGATTTCCCCCAGCGATGAAGATTCACACACCTTCACTGTCAACGCCATCAGCGGAGAGCAATACAAACTCAGAGCCTCAGATGCAAAGGAGAGACAGCACTGGGTCAGTCGACTGCAGGTCTGTGCACAGCATCACACAGAAGCCATGGGCAAGACAAACCCACCGCTGCAGTCTCGCAGTCTCTCCATGGCGTCTCAGGGCAGTGGCAGCTCTCCAGGATCTCAACACAGGATCAGCCAGAACTCAAATGCTCTGTTGGGCCTGTCCCAGCTGCAGCGCGGCTCCTCTCTCTATTCCAGCAGGAAGTCACTGCTGCCCGATCACTTGCTGGAGGCCAGAGAGATGATGACCCAGGCCCAGGGCCAGCACAGAGACCTGATCCAGAGCATTGAGGGTCTGCCCTCTTCCCAGGGTCCCTCTCCCTTGGACCAAGACCTGCTGCTGCTGAAAGCCACGTCTTTGGCCACCATGACCTGCCTTAGTGACTGCCTGCATATCCTGCAGCTCCAACAAGTCGCCAGGCAGAAATTTCCTCTCAGTGGCCCTGCCCTCGAGTGGCTGGAGCCGAAGCTTCCCGATATCCTGAAGAATGGAGGGACGCTACCCAGCATCACCAAAGATGACGGCAAAACAGAGGGAGCTGTTCTGGAACCTTTAGAAATGGACTCCTGTGATATTGTTTTGGAGCAGGAGGAGATTGATGCCACACAGGAGGTGGATGACTCCTCTCCATCCGAGGAGGAGGATCTGGGTGCAGTGGAAGAGGAGCGCAGCGTCATTCTGCACCTCCTCTCTCAGCTCAAACTGGGCATGGACCTCACCAGGGTGGTCCTGCCGACTTTCATCCTGGAGAAGCGCTCTCTTTTGGAAATGTATGCAGACTTCATGTCCCATCCTGACCTTTTTGTGGCCATCACTGATGGCTCCAGCCCGATGGACCGCATGGTTCGATTTGTGGAGTATTATCTCACTTCCTTCCATGAAGGTCGCAAAGGTGCCATTGCCAAGAAGCCCTACAACCCCATCATCGGAGAGACTTTTCACTGCTCTTGGAATGTGCCCAAAGAGGCAGCATCTCCGACAGGCATCCCCAAAGAGGGCTCCTCGTGTGCATCAGACTGTTATAATGTCCGCTTTGTGGCTGAGCAAGTTTCCCATCATCCACCTGTGTCAGGCTTCTACGCAGAATGCCAGGAGAGACAGATGTGCGTCAACACGCATGTATGGACCAAGAGCAAGTTCATGGGCATGTCTATTGGCGTCTCTATGATTGGAGAAGGTAATCTAAACCTACTGGAGCACGGGGAAGAATACACTTTCAGTCTGCCCTCTGCCTATGCCCGCTCGATCCTCACTGTGCCCTGGGTGGAGCTAGGAGGAAAGGTCAATGTCAACTGCGCCAAGACGGGCTACTCTGCAGTCATTACCTTTCAGACAAAGCCTTTTTATGGGGGCAAACTCCACAGAGTGAACGCGGAGGTCAAACACAACCCCACCAACGCGGTGGTGTGCCGCGTGCAGGGCGAGTGGAACGGTGTGCTGGAGTTTGCCTACACTAGTGGGGAGACACGCTTCGTAGATGTTACCAAACTCCCCGTCACTAGAAAAAGAGTACGACCCAATGAGCTGCAAGGACCCTATGAGTCCAGgcGACTGTGGCAGCATGTGACCGAGTCTCTGAAGGAAAGGGATATGGATAAAGCCACCGAACACAAGCGCTTCCTGGAGGAGAGACAGAGGAAAGAGGAGAGGCATCGCGCTGAGACACAGACACCATGGAGGACCAAATACTTTGAGCGCAAAGGTGAAGGCTGGATGTATTACCAAC

Function

symbol description
osbpl11 Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Orthologous to human OSBPL11 (oxysterol binding protein like 11).

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-135 Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Orthologous to human OSBPL11 (oxysterol binding protein like 11).

Ensembl:

ensembl_id ENSDARG00000076328

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073473 True 2424 mRNA 0.52 13 38524881 38556328

Neighbor

gene id symbol gene type direction distance location
XLOC_037342 lmln coding upstream 8154 38502524 ~ 38516727 (+)
XLOC_037341 mcm3ap coding upstream 24490 38457806 ~ 38500391 (+)
XLOC_037340 cyp27a1.4 coding upstream 67468 38446504 ~ 38457413 (+)
XLOC_037339 CYP27A1 coding upstream 90965 38427572 ~ 38433916 (+)
XLOC_037338 cyp27a1.2 coding upstream 99390 38420012 ~ 38425491 (+)
XLOC_037344 snx4 coding downstream 31753 38588081 ~ 38621202 (+)
XLOC_037345 znf148 coding downstream 68150 38624478 ~ 38641307 (+)
XLOC_037346 slc12a8 coding downstream 88648 38644976 ~ 38682237 (+)
XLOC_037347 heg1 coding downstream 128543 38684871 ~ 38707510 (+)
XLOC_037348 kansl1l coding downstream 156146 38712474 ~ 38774403 (+)
XLOC_037331 BX548038.2 non-coding upstream 363492 38161263 ~ 38161389 (+)
XLOC_037330 BX548038.1 non-coding upstream 364309 38160446 ~ 38160572 (+)
XLOC_037326 NA non-coding upstream 500820 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 non-coding upstream 647331 37877434 ~ 37877550 (+)
XLOC_037322 NA non-coding upstream 1016608 37506959 ~ 37508273 (+)
XLOC_037349 CR376853.1 non-coding downstream 230600 38786928 ~ 38787044 (+)
XLOC_037351 CR812481.1 non-coding downstream 454104 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1306925 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1581169 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 1721819 40278147 ~ 40278263 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_10395109_10411388 OSBPL11 coding CI01000009 null 10394885 ~ 10411621 (+)
bowfin (Amia calva) AMCG00000822 LOC106574436,LOC106575256 coding CM030137.1 CM030137.1 4651982 ~ 4667416 (+)