XLOC_037344 (snx4)


Basic Information

Item Value
gene id XLOC_037344
gene name snx4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38588081 ~ 38621202 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073474
AGCGCGGGACGGTAAACCATGGCGGATTCAGGAAGCGAGGATATAGCGGTGATTGGAAACACAGACCTGACTCCGTCGGAGTCACAGAACAACTTAAAGAACACGATGGTTGAAAAAGGGACAAGTCTTCTGAAGAAGATGGAAATCAGTGTGGCTGAAGCAGAGAAGAGGACCGGGAAGAATGCAGTCAACATGCAGGAGACTTATACAGTGTATCTTATAGAGACGAGACCGGTGGATGCTGCATCAGAAGGGACCAGTCCTGTCCCAGATTCTCTCTGGAGGCGTTACAGCGAGTTTGAGCTCCTTAGAAACTATTTGTTAGTCACTTATCCGTTTGTGGTGGTTCCACCTTTGCCTGAAAAACGGGCGGAATTTGTTTGGCACAAGCTTTCGGCAGACAACATGGACCCTGACTTTGTGGAGAGGCGTCGAGTTGGACTAGAGAACTTCCTGCTGCGAGTGGCTTCACATCCAGTCCTGGCCAGGGACAATATCTTCTATTTGTTTCTCACTGAGGAAAAAGCTTGGAAGGAAACCGTATTCGAGACAGGATTTCAGGCGAAGGCCGACTCCAGAATAAAGGCGTTAAATGCCACGTTCAGAGTAAAGAATCCTGACAAgaGGTTTGCAGAAATGAAACACTATGGAGATGAGCTGCAGGCTGTTGTTTCACAGCTGCTGAGAGTTCGGGCGAGAGCAGCTGATCGCTTTTATGGTGTCTACAAAGTCCATGGAAACTATGGAAGAGTTTTTAGCGAGTGGAGCGCCATTGAGAAAGAGATGGGAGATGGGCTGCAGAGCGCCGGACACCACATGGATGCGTATGCTGCCTCTATAGATGATATTCTAGAAGAAGAGGAGCATTATGCAGACCAGCTGAAGGAGTATCTTTTCTACGCAGATGCATTGCGGGCAGTGTGTAGGAAGCATGAACTGACTCAGTATGAACTGGAGACAGCCGTCCAGGATCTGAGCTCTAAGAAACAGCAGCGGGAGGAACTCGCCACCGGGACGGTCCGGACCTTCTCTCTGAAGGGAATGACCAGTAAACTGTTTGGACAAGAGACCCCAGAGCAGAGAGAGGCCAAGCTGAAAATGCTGGAGACACAGATTGAAGAAGGAGAGGAAATGGTCAAAGACAGAAATGTAGAATGCGAAGAGTTTGTGAAAGGTGCATGGACGGACATTGAGAGGTTCAAAGAGCAGAAAGACCATGATCTCCGAGAAGCTCTCATCAGCTACGCCATCATGCAGATCAGCATGTGTAAAAAGGGAATTCAAGTGTGGAACAACGCTAAAGAGTGCTTCAGTAAGATGTAAGTGTTCGAGCAGGACAACCAGAACACCAGGGAGGCCTTGGAGATGTCAATCCAGAGAAGCACACACTCCTAGAGACTGACCATGGGGACTAAAGTCTTCCTCTCTATCTTAAACTTTTGTCAGCCTCTTGCACCAGATGCTCTGGTGAATAAAAGGTATCGAATATTGACATACACTAGTTTCAGAGtccaaataatgaataaatggggtgctgttttatttatttccatgTTTACCAGATAGATTTCTGATCTGGTTACTTTTGTGAATGCACTATTCTGACCTACACAAGAGCTTGTGCAGATAACAGACAATTAATGACTTAACGCTTCAGACAATACAATGACTTATTATTGATTAATCTGGAACTATGTAATGATTTTTGTATGATTTGTTGTCTTTTTCTTTGCCTATCTTCATGCTTTTTGATgccaaaataattcatttttatacttttcattttctttttattaaatctaGTCAATCATAAAACACAAAAGCACATTTAAATTGTCAACATAAGGGTGTGTATTTTATGAGGGGGAAAAAAGTTGTATTTTTATCATacccctcaccccaccccaccccataATGGTGGTCCCGCACATCTGGAACGTGTCCAGTTTCTAGTTTTCATGCGTAATGATCTTTATCATCTGGCACGGAGGACACCAAGAGTCAGATTTCCTATGAAAAGTAAAGTAACTGTTCTTATTCACATGCAAACTAAATTGGTCCTGACGCCCATACAGCAAACAAAGTGCATAAATTCATCATAGTTTGCTGCTCTGTCACTTTTCTGCACGTTCAGCCATAAAAGCATAAGCTGTTTATGACCACCGGCCCCCTCCCTTTCTACGGTTCagttcatctgagaaatattaaTATGCTGTTTATGCCTTATTCAAGAATAACTGCATATTTTCTTCACTATGAATGCCATATTTGTCATGTGTTATGATGAATGGGTGGGGTCGATGTTTTGATATAAATCTGGCTGAAGGAATACGAATGTCACAGGAAAGGCAGGATATTACAATTTCCACATTTTAGAGTAGCATGAGCAACTCAGCCTGGTCATTGGGTTCATTTTTTGGGGGTGGAGATGATTATTTGTATATAAGCTGTTAAAATCATTGTTGTGTAACactaatggtaataataatagtaataataaagtaCCATTATCacttgg
>TCONS_00073475
GACGGTAAACCATGGCGGATTCAGGAAGCGAGGATATAGCGGTGATTGGAAACACAGACCTGACTCCGTCGGAGTCACAGAACAACTTAAAGAACACGATGGTTGAAAAAGGGACAAGTCTTCTGAAGAAGATGGAAATCAGTGTGGCTGAAGCAGAGAAGAGGACCGGGAAGAATGCAGTCAACATGCAGGAGACTTATACAGTGTATCTTATAGAGACGAGACCGGTGGATGCTGCATCAGAAGGGACCAGTCCTGTCCCAGATTCTCTCTGGAGGCGTTACAGCGAGTTTGAGCTCCTTAGAAACTATTTGTTAGTCACTTATCCGTTTGTGGTGGTTCCACCTTTGCCTGAAAAACGGGCGGAATTTGTTTGGCACAAGCTTTCGGCAGACAACATGGACCCTGACTTTGTGGAGAGGCGTCGAGTTGGACTAGAGAACTTCCTGCTGCGAGTGGCTTCACATCCAGTCCTGGCCAGGGACAATATCTTCTATTTGTTTCTCACTGAGGAAAAAGCTTGGAAGGAAACCGTATTCGAGACAGGATTTCAGGCGAAGGCCGACTCCAGAATAAAGGCGTTAAATGCCACGTTCAGAGTAAAGAATCCTGACAAgaGGTTTGCAGAAATGAAACACTATGGAGATGAGCTGCAGGCTGTTGTTTCACAGCTGCTGAGAGTTCGGGCGAGAGCAGCTGATCGCTTTTATGGTGTCTACAAAGTCCATGGAAACTATGGAAGAGTTTTTAGCGAGTGGAGCGCCATTGAGAAAGAGATGGGAGATGGGCTGCAGAGCGCCGGACACCACATGGATGCgtgtctccaacaacaggctgatatgcacgcaagGTATGCTGCCTCTATAGATGATATTCTAGAAGAAGAGGAGCATTATGCAGACCAGCTGAAGGAGTATCTTTTCTACGCAGATGCATTGCGGGCAGTGTG
>TCONS_00073476
CAAGCTGTTATAACAGTAAGGTTAATCTGAAATGTTCTAGAAACTCCCACAGGCTGATTAAGTTACTCACATGCAACTTTTTTCTAACACAAACCCCCATCTGGTTTTCTGAAAGTGATCAAACTGCAGGTCATCTACATTAGGTCTTCAGTTTAACAATTCCCGTAACATACAAAcatctttatttgtttaatggtcaatttttgtatattttgtgtgtgtgtgtactttgacAGGGCAGTGTGTAGGAAGCATGAACTGACTCAGTATGAACTGGAGACAGCCGTCCAGGATCTGAGCTCTAAGAAACAGCAGCGGGAGGAACTCGCCACCGGGACGGTCCGGACCTTCTCTCTGAAGGGAATGACCAGTAAACTGTTTGGACAAGAGACCCCAGAGCAGAGAGAGGCCAAGCTGAAAATGCTGGAGACACAGATTGAAGAAGGAGAGGAAATGGTCAAAGACAGAAATGTAGAATGCGAGTAAGCTCTGCACTATACTCTCAGCTGATTAAATAGGTTTTTGCAGACAGCAACAGAAGACATGATATCGCAGACCATGCTTTCTGTTGCTGTC

Function

symbol description
snx4 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Is expressed in notochord. Orthologous to human SNX4 (sorting nexin 4).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-1923 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Is expressed in notochord. Orthologous to human SNX4 (sorting nexin 4).

Ensembl:

ensembl_id ENSDARG00000022659

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073474 False 2518 mRNA 0.43 14 38588081 38621202
TCONS_00073475 False 949 mRNA 0.48 12 38588088 38615847
TCONS_00073476 True 576 lncRNA 0.43 2 38615603 38618331

Neighbor

gene id symbol gene type direction distance location
XLOC_037343 osbpl11 coding upstream 31753 38524881 ~ 38556328 (+)
XLOC_037342 lmln coding upstream 71354 38502524 ~ 38516727 (+)
XLOC_037341 mcm3ap coding upstream 87690 38457806 ~ 38500391 (+)
XLOC_037340 cyp27a1.4 coding upstream 130668 38446504 ~ 38457413 (+)
XLOC_037339 CYP27A1 coding upstream 154165 38427572 ~ 38433916 (+)
XLOC_037345 znf148 coding downstream 3276 38624478 ~ 38641307 (+)
XLOC_037346 slc12a8 coding downstream 23774 38644976 ~ 38682237 (+)
XLOC_037347 heg1 coding downstream 63669 38684871 ~ 38707510 (+)
XLOC_037348 kansl1l coding downstream 91272 38712474 ~ 38774403 (+)
XLOC_037349 CR376853.1 coding downstream 165726 38786928 ~ 38787044 (+)
XLOC_037331 BX548038.2 non-coding upstream 426692 38161263 ~ 38161389 (+)
XLOC_037330 BX548038.1 non-coding upstream 427509 38160446 ~ 38160572 (+)
XLOC_037326 NA non-coding upstream 564020 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 non-coding upstream 710531 37877434 ~ 37877550 (+)
XLOC_037322 NA non-coding upstream 1079808 37506959 ~ 37508273 (+)
XLOC_037351 CR812481.1 non-coding downstream 389230 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1242051 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1516295 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 1656945 40278147 ~ 40278263 (+)

Expression


Co-expression Network