XLOC_037346 (slc12a8)


Basic Information

Item Value
gene id XLOC_037346
gene name slc12a8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38644976 ~ 38682237 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073480
CAGATCCAGCTACTGTAACCTTACCCAGGAGAGAGAATGAGTCCTCAAGTGCAAGAGTTATTTCATGAAGACGCACAGGGTTCCCAGATTAATGCTCAACCTTGGTGGAAGGTGCAGCTTTTTGTCTGGGAACCTGTGCTTTTCGGCACTTGGGATGGAGTCTTCACTACCTGCATGATCAACATCTTTGGAGTGGTGCTCTTCTTACGGACTGGCTGGCTTGTGGGTAACACGGGTGTGTTTTTGGGCATGCTGCTGGTATCATTGGTGGTGCTGGTGGCCTTGGTCACAGTGATGTCTGGTGTTGGCGTGAGTGAATGTTGCAGCGTGGGAAACGGGGGAGTTTACTCCATGATCTCCACTGTGCTGGGAGGCAGGATTGGAGGAACTGTGGGACTCCTGTATGTTTTTGGACAGTGTGTGGCTGGAGCGATGTACATTACAGGTTTTGCTGAGTCCATTGCTCAGGTGTTGAGTTTGCAGAGCACATGGGTTGTGAGGGGCATATCTGTGGCCGTTCTGCTCGGTCTGCTTGGAATTAATCTGGCCGGGGTCAAATGGATTGTACGACTTCAATTGGTTCTGCTTGGGATTTTAGCAATGTCAACTTTGGATTTCGTCATCGGAACTTTTAGTCATCTAGATCCAGAGCATGGATTCGTGGGCTATTCGGAGAAGCTGCTGCGTAAGAACACCCTGCCAGACTACACAGCTGGCGAGACTTTCTTCACCGTGTTTGGGGTTTTCTTTCCTGCGGCGACAGgtgtgatGGCGGGATTCAACATGAGCTCAGATC
>TCONS_00073481
CAGATCCAGCTACTGTAACCTTACCCAGGAGAGAGAATGAGTCCTCAAGTGCAAGAGTTATTTCATGAAGACGCACAGGTGCAGCTTTTTGTCTGGGAACCTGTGCTTTTCGGCACTTGGGATGGAGTCTTCACTACCTGCATGATCAACATCTTTGGAGTGGTGCTCTTCTTACGGACTGGCTGGCTTGTGGGTAACACGGGTGTGTTTTTGGGCATGCTGCTGGTATCATTGGTGGTGCTGGTGGCCTTGGTCACAGTGATGTCTGGTGTTGGCGTGAGTGAATGTTGCAGCGTGGGAAACGGGGGAGTTTACTCCATGATCTCCACTGTGCTGGGAGGCAGGATTGGAGGAACTGTGGGACTCCTGTATGTTTTTGGACAGTGTGTGGCTGGAGCGATGTACATTACAGGTTTTGCTGAGTCCATTGCTCAGGTGTTGAGTTTGCAGAGCACATGGGTTGTGAGGGGCATATCTGTGGCCGTTCTGCTCGGTCTGCTTGGAATTAATCTGGCCGGGGTCAAATGGATTGTACGACTTCAATTGGTTCTGCTTGGGATTTTAGCAATGTCAACTTTGGATTTCGTCATCGGAACTTTTAGTCATCTAGATCCAGAGCATGGATTCGTGGGCTATTCGGAGAAGCTGCTGCGTAAGAACACCCTGCCAGACTACACAGCTGGCGAGACTTTCTTCACCGTGTTTGGGGTTTTCTTTCCTGCGGCGACAGgtgtgatGGCGGGATTCAACATGAGCTCAGATCTTCAGAGGCCCGAACACAACATCCCTGTGGGAACTCTCGCCGCAGTCTGCACCTCGTGGTTCCTGTATCTCGTCTTTGTGTTCTTACTGGGAGCCATTTGCACCAGAGAGGCGCTGCGCTATGATTTCTTAATAGCGGAAAAGgTCTCCTTGGTTGGTTTCCTGTTTTTGCTGGGCCTCTACATCTCCTCCCTGGCCTCCTGCATGGGCGGCCTGTACGGTGCACCCAGGATCCTCCAGTGCATCGCCCAGGAGAGAGTCATTCCAGTTCTTGCGTTTCTTGGAAAAGGGCGAGGGCCCAATAAGACGCCTGTGGCCGCCATCTGTCTGACCAGCTTGATCACCATGGGCTTCATCTTCATCGGCCAGGTCAATGTCCTGGCTCCTATCGTCACCATTAACTTCATGCTAACCTATAGCGTAATTGATTATTGCTATTTCTGTGTGGTGAAAACCTACGAGCTGCAAGTCCAGCAAAGGAAGAAGCTGATCAGCAGGTCGAGCTCCAGAAAATCACTGGTGTCCAGCACTCACCCCCGTTACGGCAGCGGTGGAGCCATCAGTGACCCTGTGAACGGGACACTGCTGCAGTTCACCAAGGACATGGACCAGATATTTCCATTGCCCAGCACTGAAGAACAGAGAGCCAGTCCTGCCTCTAAAGCCCGAGGCAGGAAGACAAAGATTCCAGCTAAAGAAATGCTGATGAATAGTTTTGGGTTGGACTTGAACAGCAATGCACCATTAGATAAAGGAAAAGATGAGAGAGAGCTGGAACAAGCTGCTGGATTGGATGATGATACCAGTAGCCAGATAGGACTGATAGAGTCTGACCTGAAAATGGGAAACCAGATGAATCTGTCCTTGCCTAATTCTGGCCCGGCTGAACTTGAACAGCTTCCAAAAGAGAAGATAGACAGGAATGGTTCAGAAACAAATCTTGAAGGATCCGAAATCAGATCAATTCAAAGTTCAGTTTATGCCAGATTTTGCAACCCCTGGGTTTCGTTGATTGGTGCGTTGTGTTCTTTTATGATAATGTTCATTATCCAGTGGATGTACGCCTTGATTAACATTTCAGCTGCACTTATACTCTTTATCTACATTGGAACAACAAGTCCAGGTTTGCCAACAGGTGCTGCATCTCACTTCAGCTTCTTCAAGTGGCTCAAGACATCACTGCATAATTTGGGGAGGCAAAATGGGGCCCTTCAGGACCAGATTGTGGTGACACCGTCTTTGTCAGCTGTTGGCATGGAGACCCGGCAGCTGACAGAGGAAAATGCAGACTTTGCCCTCCGTGATCGGTACCATCACTCCTCCTTTATCACCACCACAGACAAGATGGTCCATCCTCAGTCCAACTGAGTATGAAGCAGCTGCGCCCTGCTGACCAGCTGGACTGAAACCATGGACACATGGGACATAATAATCTTGACTGATCACTGAATTGAgcaattactgtatttttatttactgcaGTTGTCTTATACTTGGACTGAGTCTTATTTTCCTGGAAAATCTGAAGAAAACAAATGTTTCGGGAATGTGCAATCAAATCATGCATTTTGGTTCAATGTGCCGTTGTGTTGGaggaatatttaaa
>TCONS_00073482
CATTAATAGGGATTTATTTAGATTTGAGTGACACTGGTTTGTGTAGGGTTCCCAGATTAATGCTCAACCTTGGTGGAAGGTGCAGCTTTTTGTCTGGGAACCTGTGCTTTTCGGCACTTGGGATGGAGTCTTCACTACCTGCATGATCAACATCTTTGGAGTGGTGCTCTTCTTACGGACTGGCTGGCTTGTGGGTAACACGGGTGTGTTTTTGGGCATGCTGCTGGTATCATTGGTGGTGCTGGTGGCCTTGGTCACAGTGATGTCTGGTGTTGGCGTGAGTGAATGTTGCAGCGTGGGAAACGGGGGAGTTTACTCCATGATCTCCACTGTGCTGGGAGGCAGGATTGGAGGAACTGTGGGACTCCTGTATGTTTTTGGACAGTGTGTGGCTGGAGCGATGTACATTACAGGTTTTGCTGAGTCCATTGCTCAGGTGTTGAGTTTGCAGAGCACATGGGTTGTGAGGGGCATATCTGTGGCCGTTCTGCTCGGTCTGCTTGGAATTAATCTGGCCGGGGTCAAATGGATTGTACGACTTCAATTGGTTCTGCTTGGGATTTTAGCAATGTCAACTTTGGATTTCGTCATCGGAACTTTTAGTCATCTAGATCCAG

Function

symbol description
slc12a8 Predicted to enable potassium:chloride symporter activity. Acts upstream of or within cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC12A8 (solute carrier family 12 member 8).

GO:

id name namespace
GO:0006884 cell volume homeostasis biological_process
GO:0055064 chloride ion homeostasis biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0060271 cilium assembly biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015379 potassium molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-5654 Predicted to enable potassium:chloride symporter activity. Acts upstream of or within cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC12A8 (solute carrier family 12 member 8).

Ensembl:

ensembl_id ENSDARG00000074384

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073480 False 796 mRNA 0.50 6 38644976 38667311
TCONS_00073481 False 2368 mRNA 0.49 13 38644976 38682237
TCONS_00073482 True 617 mRNA 0.49 3 38645136 38647841

Neighbor

gene id symbol gene type direction distance location
XLOC_037345 znf148 coding upstream 3669 38624478 ~ 38641307 (+)
XLOC_037344 snx4 coding upstream 23774 38588081 ~ 38621202 (+)
XLOC_037343 osbpl11 coding upstream 88648 38524881 ~ 38556328 (+)
XLOC_037342 lmln coding upstream 128249 38502524 ~ 38516727 (+)
XLOC_037341 mcm3ap coding upstream 144585 38457806 ~ 38500391 (+)
XLOC_037347 heg1 coding downstream 2634 38684871 ~ 38707510 (+)
XLOC_037348 kansl1l coding downstream 30237 38712474 ~ 38774403 (+)
XLOC_037349 CR376853.1 coding downstream 104691 38786928 ~ 38787044 (+)
XLOC_037350 map2 coding downstream 201151 38883388 ~ 38993033 (+)
XLOC_037351 CR812481.1 coding downstream 328195 39010432 ~ 39014598 (+)
XLOC_037331 BX548038.2 non-coding upstream 483587 38161263 ~ 38161389 (+)
XLOC_037330 BX548038.1 non-coding upstream 484404 38160446 ~ 38160572 (+)
XLOC_037326 NA non-coding upstream 620915 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 non-coding upstream 767426 37877434 ~ 37877550 (+)
XLOC_037322 NA non-coding upstream 1136703 37506959 ~ 37508273 (+)
XLOC_037353 NA non-coding downstream 1181016 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1455260 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 1595910 40278147 ~ 40278263 (+)

Expression


Co-expression Network