Item | Value |
---|---|
gene id | LOC110519474 |
gene name | mtr |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048587.1 |
NCBI id | CM023241.2 |
chromosome length | 62880378 |
location | 196406 ~ 274981 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
mtr | Predicted to enable cobalamin binding activity; methionine synthase activity; and zinc ion binding activity. Predicted to act upstream of or within methionine biosynthetic process; methylation; and pteridine-containing compound metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural tube; central nervous system; digestive system; immature eye; and mesoderm. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autistic disorder; hematologic cancer (multiple); hyperhomocysteinemia; and methylmalonic aciduria and homocystinuria type cblG. Orthologous to human MTR (5-methyltetrahydrofolate-homocysteine methyltransferase). |
description |
---|
PREDICTED: methionine synthase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_005039144.1 | False | 3568 | mRNA | 0.55 | 30 | 196406 | 257859 |
XR_005039145.1 | False | 3657 | mRNA | 0.55 | 31 | 196406 | 258442 |
XR_005039142.1 | False | 3853 | mRNA | 0.55 | 30 | 196406 | 258515 |
XR_005039141.1 | False | 3977 | mRNA | 0.55 | 31 | 196406 | 258516 |
XR_005039143.1 | False | 3895 | mRNA | 0.55 | 31 | 196406 | 258516 |
XM_036960001.1 | False | 4647 | mRNA | 0.54 | 33 | 196407 | 274981 |
XM_036960002.1 | False | 4226 | mRNA | 0.54 | 32 | 206363 | 274981 |
TU2084032 | False | 1018 | TUCP | 0.51 | 9 | 196470 | 214290 |
TU2084029 | False | 730 | TUCP | 0.57 | 6 | 226339 | 232662 |
TU2084035 | True | 523 | TUCP | 0.55 | 6 | 243218 | 254838 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118943898 | NA | coding | upstream | 521 | 194822 ~ 195885 (+) |
LOC110510910 | LOC105888795 | coding | upstream | 4172 | 108027 ~ 192234 (+) |
LOC110514580 | LOC106577370 | coding | upstream | 95361 | 44689 ~ 101045 (+) |
LOC110516746 | ryr2 | coding | downstream | 2629 | 277610 ~ 840685 (+) |
LOC110517143 | LOC106577302 | coding | downstream | 838657 | 1113638 ~ 1117176 (+) |
LOC110516888 | LOC106577303 | coding | downstream | 849490 | 1124471 ~ 1288428 (+) |
hhex | hhex | coding | downstream | 1287991 | 1562972 ~ 1566164 (+) |
exoc6 | exoc6 | coding | downstream | 1349405 | 1624386 ~ 1764018 (+) |
G1820940 | NA | non-coding | upstream | 12087 | 181991 ~ 184319 (+) |
G1820934 | NA | non-coding | upstream | 36885 | 153064 ~ 159521 (+) |
G1820930 | NA | non-coding | upstream | 49519 | 146471 ~ 146887 (+) |
G1820928 | NA | non-coding | upstream | 61135 | 134821 ~ 135271 (+) |
G1820925 | NA | non-coding | upstream | 69167 | 126301 ~ 127239 (+) |
G1820976 | NA | non-coding | downstream | 35640 | 310621 ~ 311289 (+) |
G1821003 | NA | non-coding | downstream | 90150 | 365131 ~ 365569 (+) |
G1821008 | NA | non-coding | downstream | 112361 | 387342 ~ 416186 (+) |
G1821012 | NA | non-coding | downstream | 122204 | 397185 ~ 423861 (+) |
G1821013 | NA | non-coding | downstream | 134639 | 409620 ~ 425169 (+) |
G1820989 | NA | other | downstream | 61766 | 336747 ~ 337316 (+) |
G1821637 | LOC106577436 | other | downstream | 1031725 | 1306706 ~ 1309304 (+) |
G1822059 | NA | other | downstream | 1593027 | 1868008 ~ 1868507 (+) |
LOC110512159 | LOC106591006 | other | downstream | 1856742 | 1934753 ~ 2203012 (+) |