LOC110517143 (LOC106577302)


Basic Information

Item Value
gene id LOC110517143
gene name LOC106577302
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1113638 ~ 1117176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960539.1
tgttttgtacactcagagtaTATGACTTTATAAAGCCAAAAACCTAATGGTATTTTCTCTCCCAGGTGTCTCCAGAATATGCCCTCAGGACGGCAGCGCTATGACCTTGAACCTGAACTCGTCCAGCTCTTCCCCCTCTGTAGACCCCAGTATGTACCTGAACAACAGCTCCCCAGGGTTGAGGGTCTACGCCGACAACGCCATCCTGGGCCTGGGCCTTGTGCTGGACAACGACTccattaccagggacctcaccaaCCTGACCAGCCTGTCCAACGCCTCCCTCCTTGACCCCACGGTGACCTATGACCCTCTGGGAGGTCACACCATCTGGCAGGTCATCCTGATCGTGTTCCTCACCGGGTCTCTGTCTCTGGTCACCGTCGTAGGAAACATCCTGGTGCTCATCTCCTTCAAGgTGAACAAGCAGCTGAAGACGGTGAATAACTACTATCTCCTCAGTCTGGCCTTCGCTGACCTCATCATCGGGACTCTTTCCATGAACCTCTACACTACCTACATTATCATGGACCAATGGGCTTTAGGGAACTGGGCGTGCGACCTGTGGTTGGCTATCGACTACGTGGCGAGCAACGCCTCCGTCATGAACCTGCTGGTGATCAGCTTCGACCGCTACTTCTCCATAACTCGACCTCTGACTTACCGGGCCAAGAGGACCACCAAGAGAGCTCTGACTATGATCAGCATGGCCTGGTCCGTGTCCTTCGTCCTGTGGGCCCCGGCTATACTCTTCTGGCAGTATATCGTAGGGGAGCGCACTGTGCCTCGTGGAGAATGCTTTATCCAGTTTCTCTCAGAGCCTATTATCACATTCTGCACGGCCATCGCTGCCTTCTACCTGCCGGTCACCATCATGACGGTTCTCTACTGGAGgatctacagagagacagagaacaggcaGAAGGACCTGGCGGGGTTGAGGGGGTCGGGGGCAGGGAACAAGGCGGGCCAGGGGGGTAgccagaaggaggaggaggaggagaagaaggaggaggccCAGGAAGAGGAGGCTCCCATGGTGCCCAAAACAGGAAGCTCCAGGAGCTGCAGCAGTTACGAGCTTAACCAGGCCGGTCAGAAAGACTCTGGAGCCAAGAAGACCAGAGGGTGCTTCCGGTTCTGGCCGCTGAGTAGGTGGTCCAAGAAGAAGACAGTCACAGTGAGAGGAGAGCCGGAACACAGCAGCTCCGATAGCTGGAACAACAACGATGGGGGTGGGGCCTCCATGGACCAATCAGACTCTGAGGACGAGGAGGGGGCGACGGAGTCAAGCCGAGCTATCTATTCCATCGTGGTCAACCTGCCGGGGATAAACTCCGCCCCTGGTAACAACCCTAACAATGACCCCCAGCTGACATCTCCTGAGGACCAGGATGCTACGAAGGACCCTCTCCGGCCACAAGTGGGCGATAATAAGGACAAGAAGACATCCTCTAATACCAGAAGGGAGAAAGACAAGGAAGACAACAGCTACCACCAACGCTCCTTCTCTAAAACCCCCGTCACTTCCTCGTCTTCCATCCAGACCTCCACCAAGAGCCACCAAACAGGGGCTGTGTCGTCCACCTCCAAGTCCCCCTCCTCGGCCCCCATCTCCTTGAAGGATGCAGCCATGGCCAAGCGCTTCGCCTCCAAAGCCAAGACCCAGATCACCAAGCGTAAGAAGCAGAGTGTAGtcaaggagaagaaagagaagaaggccGCCCAGACTCTCAGTGCCATCCTGCTGGCTTTCATCATAACCTGGACTCCCTATAACATTATGGTGTTGGTCAACACCTTCTGTACTGGCTGCATCCCTGAGGCTCTGTGGGCTCTGGGCTATTGGCTGTGTTACGTCAACAGCACCATCAACCCCATGTGTTACGCCATGTGCAACCTCACCTTCAGGAACACCTTCAAGATGATTCTACTCTGCCGCTGGCAGGACATCAACAAACGCAACAAGCCTCAGTTCCAGCAGAGGCAGACGGTCGTCGCCTTCCGCAAGAAGGAGCCCTTGTAGGTGTAATCTACTGGGCCCCCTGGGTCAGCTGTATAGGGCTCTGTCGGGCCTCTCTGGGACCCTGGGTCAGCTGTATAAGGGCTCTGTCAGGCCTCTCTGGGATGATTTATATTAACAGGACAGTTGGCCAGGGAGATGGACTGTACTTACGAGCCTTTCTCAACGATGAAGAGAtcacataataatataataatacaatgGAAAATAGTAACACgacaaataaaatacacaatTATTTTCAATTCAACTCTGCATCTCTTTCAACTATTGACTTTTTCCCCCCACAGCTGGCACCAGTTTGGCGCCAAAACACTGACAACAAAGACATATTCAACATAGTAAAATCATTAAAAACTGTCTAAAAAAAAACCACAGGACCCTTCATGCTGAATCCCTCATATTTAACAGTGTTCACCAACTTGGTTTATATTTAGAATGATGTTTTACAGCTTCGTCATTCTATGtttattttcaaatatatatGTTGCATGTGACAAGGCCACacagatgaccagggatattTATACACGGAGGGAAGGggagatttgatttgatgttccaacCCAATGGAATATTTGGGACATATAAAAGGGCTGTCAGATGTATGACA
>TU2084958
attttttttaacagcGTTCGACATCAGTTGATGTTTTACTGTGGAGTGACACTTTAATAATAATGAAaggtttctcttctctcttccaggTGAACAAGCAGCTGAAGACGGTGAATAACTACTATCTCCTCAGTCTGGCCTTCGCTGACCTCATCATCGGTATTTTAACTGTACTTGCTGTTTTCATACGtgtatagatgatgtaatgtatcTCAGCTGATATTGATTATGTATTGTAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960539.1 False 2636 mRNA 0.52 4 1113638 1117176
TU2084958 True 239 lncRNA 0.37 1 1114558 1114796

Neighbor

gene id symbol gene type direction distance location
LOC110516746 ryr2 coding upstream 272953 277610 ~ 840685 (+)
LOC110519474 mtr coding upstream 838657 196406 ~ 274981 (+)
LOC118943898 NA coding upstream 917753 194822 ~ 195885 (+)
LOC110510910 LOC105888795 coding upstream 921404 108027 ~ 192234 (+)
LOC110514580 LOC106577370 coding upstream 1012593 44689 ~ 101045 (+)
LOC110516888 LOC106577303 coding downstream 7295 1124471 ~ 1288428 (+)
hhex hhex coding downstream 445796 1562972 ~ 1566164 (+)
exoc6 exoc6 coding downstream 507210 1624386 ~ 1764018 (+)
LOC110513647 LOC106577307 coding downstream 663781 1780957 ~ 1785253 (+)
LOC110512159 LOC106591006 coding downstream 817577 1934753 ~ 2203012 (+)
G1821526 NA non-coding upstream 47852 1065193 ~ 1065786 (+)
G1821520 NA non-coding upstream 63910 1047984 ~ 1049728 (+)
G1821508 NA non-coding upstream 120428 992732 ~ 993210 (+)
G1821492 NA non-coding upstream 152195 961239 ~ 961443 (+)
G1821487 NA non-coding upstream 168953 944170 ~ 944685 (+)
G1821592 NA non-coding downstream 1806 1118982 ~ 1119417 (+)
G1821591 NA non-coding downstream 3146 1120322 ~ 1122523 (+)
G1821602 NA non-coding downstream 8347 1125523 ~ 1125736 (+)
G1821604 NA non-coding downstream 14328 1131504 ~ 1131771 (+)
G1821613 NA non-coding downstream 46554 1163730 ~ 1164039 (+)
G1820989 NA other upstream 776322 336747 ~ 337316 (+)
G1821637 LOC106577436 other downstream 189530 1306706 ~ 1309304 (+)
G1822059 NA other downstream 750832 1868008 ~ 1868507 (+)
LOC110514481 LOC106604002 other downstream 1459942 2576948 ~ 2647345 (+)

Expression

LOC110517143(LOC106577302) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110517143(LOC106577302) Expression in each Bioproject

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LOC110517143(LOC106577302) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network