XLOC_003735


Basic Information

Item Value
gene id XLOC_003735
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44369127 ~ 44375182 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008703
CTTTAAGGTGTCTTTAAAGCATCCCTGGCGCATGCTCCCCTCCCACCCAATCAGCGCCGCCTCCAGCCTGTCAGTTAGAAGCAGCGACCAATCGGAGCGCAGCGTGACGTTAGAGCTGCAGTGAGCGAGTTGATAGGCGGCTGTCTCCGATCATCTCTCTCATCTTCTGATCATCGATCTCCACACgcgctgattgattgattattgattgattggtcGGTGATGTCGGTGCTGGAGGAGTACGAGCGGGCGCCCAAGCGGCTGAAGGTGTGCTCTGAGGAGCTGGAGGACGGAGAGGAGTCCGACTCAGCATCCGCCGAGGAGGAGCAGCGCTGGAGCTCCGCAGCCGAGAGGAAGTCGCAGCTCCACAACTCCACCGCAAC

Function

GO:

id name namespace
GO:0022610 biological adhesion biological_process
GO:0051179 localization biological_process
GO:0006811 ion transport biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0007155 cell adhesion biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030425 dendrite cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098984 neuron to neuron synapse cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0098794 postsynapse cellular_component
GO:0032279 asymmetric synapse cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0098802 plasma membrane signaling receptor complex cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0022835 transmitter-gated channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004971 AMPA glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008703 True 383 lncRNA 0.59 2 44369127 44375182

Neighbor

gene id symbol gene type direction distance location
XLOC_003734 srsf7b coding upstream 6095 44356504 ~ 44363032 (+)
XLOC_003733 CABZ01100187.1 coding upstream 33347 44335666 ~ 44335780 (+)
XLOC_003732 CABZ01100185.1 coding upstream 33805 44324761 ~ 44335322 (+)
XLOC_003731 NA coding upstream 50993 44317203 ~ 44318134 (+)
XLOC_003730 NA coding upstream 54717 44311334 ~ 44314410 (+)
XLOC_003736 NA coding downstream 9742 44384924 ~ 44391541 (+)
XLOC_003737 NA coding downstream 19153 44394335 ~ 44399370 (+)
XLOC_003738 NA coding downstream 72506 44447688 ~ 44450363 (+)
XLOC_003739 ero1b coding downstream 127228 44502410 ~ 44524932 (+)
XLOC_003740 NA coding downstream 164322 44539504 ~ 44542998 (+)
XLOC_003369 CR854846.2 misc upstream 28246045 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31657131 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31674864 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31683528 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31689099 12679732 ~ 12680028 (+)
XLOC_003727 NA non-coding upstream 172256 44163330 ~ 44196871 (+)
XLOC_003743 NA non-coding downstream 301324 44676506 ~ 44752657 (+)

Expression


Co-expression Network