LOC110519246 (LOC106591225)


Basic Information

Item Value
gene id LOC110519246
gene name LOC106591225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2322964 ~ 2324578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596423.2
ATGTGCTCGCTGTCACTGCGGACGTGACGATCAGATAGGCTTGGAAATGATTCTGGACCGTGAATATTCTCTGGAGATAAAACCATATTTATTTACCATGAAAAACgttacagtataactttagacgcGCATTTATTTCGTTTGAACGCGGTCCCATCCTGGAGTGACGATATTGTGCGAGATTCGAGGAGAAAAGAGCGTTTCCAACTCGGTCCGTTTCTgctgcctgtagctcagctgCGTCTGAAGAAAACAAGCATCGATAAGCGTCGGATTTGTCTCCACATGAAAAATGCCACGGGATAACAAGAAGTCTCTCATTCAGAAAATAGCCAGCCAAGCCAATATCACATTTAAAGATTTCAATGCATCCGCAATTGGGGACAACAAAGTATTATTGGACAACCGGGGGGATCTAATCACCCTGCTGACGGAAGTCAGGACTGCAGACCTGAAGATGAAACCGAACGGCTCCCATTCCGAACACAACCCACCTGTCACGTACATGCACATCTGCGAGACGGAGTCGTTCAGTATGGGGGTGTTTCTACTGAACAGCGGGGCTTCCATCCCGCTCCACGACCACCCCGGTATGAACGGGATGCTCAAGGTTCTATACGGGAAAGTCAGTATCAGGTGTTTTGACCTGTTGGATAAACCTTCGGACCAGGTGCAGAGTGAGACCCAGTTCGACCCGCCGCTGCTGCCGTTCCAGAAGGACTCTCTGCGGCGGGCTGTGCTCCGGTCAACCATGTGGTTCACCCATGACAGTAGTCCGTGTATCTTAACCCCACAGAGGGAGAACCTGCATCAGATCGACACGGTGGATGGACCGGCTGCTTTCCTCGACATCCTGGCACCTCCGTATGACCCTGAAGATGGGAGGGACTGTCATTATTATAAAGTCCTACAGACTGTTCCCGACGCAGACAGTAAGGTAGAGGCGCAGCAGCCGTGGGAGGAAGAGACGTGGTTACTAGAGATAGGCCAGCCTGATGGCTTCTGGTGTGGGGGTGAACCATACCCCGGGCCCAAGGTTTCCTTCTAATGTCGGTGTTGTAAAGGCAGGGATACCTGCGACCAAATAGGGGCTGCCGGAGGACTTTCAAAAGACTGAATCACTGTGACTGGGACATGAGTTGTAGCAGGTGAATGAACTGCAGGTGGATAATGTCTCTGGGACAGGCCTTTTGTTTAAGTATTGAACCTTCTCCTGTAAACTTCCAAATAAGATGTTTTCATCCTGAACAGGCTCAGAAACGTCCTATTCTCTTAACAACATTTGTTTGTAACTGAAAATGTGATATGCCTTATGTGAATATTGAATGTAAACTTTGAAAGCATTTATCATGTCTAGTTTCCATGTGCACACTACATTTTCTATCTTTCATTGATTTATTCCAaacaaatgtgtgtatgtgtaaacaCTAGCTTTGTTTATAATTGAAGGCTTTTATTTTGGGACAGCTGAAAGTTCTACCTATAGCCTtactgcatatacagtgccttcggaaagtattcagaccccttgacttttttcacattttgttacataacagctttattctaaaatatattaaattgtttttcctcatcaatctacactaccccataa

Function

NR:

description
2-aminoethanethiol dioxygenase-like

GO: NA

KEGG:

id description
K23953 PCO; plant cysteine oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596423.2 True 1615 mRNA 0.46 1 2322964 2324578

Neighbor

gene id symbol gene type direction distance location
LOC110511972 LOC106613891 coding downstream 67517 2250516 ~ 2255447 (-)
LOC118943847 NA coding downstream 73164 2246705 ~ 2249800 (-)
LOC110516366 reep3 coding downstream 410294 1872701 ~ 1912670 (-)
LOC118943822 NA coding downstream 426383 1896283 ~ 1896581 (-)
LOC110515109 LOC106611092 coding downstream 765835 1517507 ~ 1557129 (-)
LOC118943863 arid5b coding upstream 63443 2388021 ~ 2493351 (-)
LOC118943899 LOC106592999 coding upstream 189401 2513318 ~ 2528846 (-)
LOC110510403 LOC106591053 coding upstream 413513 2738091 ~ 2751875 (-)
LOC110531337 LOC105026297 coding upstream 607991 2932569 ~ 2963524 (-)
LOC110518872 LOC106594258 coding upstream 653488 2978066 ~ 3007599 (-)
G1822390 NA non-coding downstream 1289 2321407 ~ 2321675 (-)
G1822375 NA non-coding downstream 23734 2298222 ~ 2299230 (-)
G1822369 NA non-coding downstream 43370 2279042 ~ 2279594 (-)
G1822357 NA non-coding downstream 62256 2260458 ~ 2260708 (-)
G1822393 NA non-coding upstream 2390 2326968 ~ 2328460 (-)
G1822409 NA non-coding upstream 38437 2363015 ~ 2363711 (-)
G1822414 NA non-coding upstream 45286 2369864 ~ 2370289 (-)
G1822471 NA non-coding upstream 61221 2385799 ~ 2386495 (-)
G1822473 NA non-coding upstream 68647 2393225 ~ 2393503 (-)
G1822333 NA other downstream 72747 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 190453 2131312 ~ 2132511 (-)
G1822081 NA other downstream 431816 1888208 ~ 1891148 (-)
G1822025 NA other downstream 557427 1763993 ~ 1766638 (-)
G1821923 NA other downstream 809523 1502951 ~ 1513441 (-)
G1823141 NA other upstream 180989 2505567 ~ 2506443 (-)
LOC118943857 LOC106563104 other upstream 958555 3281355 ~ 3325024 (-)
G1823530 NA other upstream 1180999 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 1230435 3553536 ~ 3601859 (-)

Expression


Co-expression Network