LOC118943863 (arid5b)


Basic Information

Item Value
gene id LOC118943863
gene name arid5b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2388021 ~ 2493351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960207.1
GAGTGAATGTTGAGAGCGTCGAGATGGAGCCCAACTCACTCACGTGGCTCGGCTCACCTTGCGGTTTTCACGGACCTTACATTTTCTACAAGGCTTTTAGGTTTGACATTGAAGCCAATCCTCGGATCCTGTCTCTGGGAGACTTTTTCCTAGTGAGGTGTAGACCCGGGGAACCGCTCTGCATAGCGGAGCTACAGCTGTTATGGGAAGAAAGAAGCAGAAAACAACTTTTATCCAGCTCCAAACTTTATTTTCTCCCCGAAGACACCCCTCAGGGACGGACTGTCAGTCACGGAGAGGATGAGGTGCTGGCTGTGTCTGAGAAGGTGGTGGTGAAGTTACAGGACCTGGTCAGATGGACTGTATGGGACTCTTCAGGCTGGAGCAGGGGCCTGAAGGCTGCACCTCTAAAGCCCAGTGAGGTGCTCCAAGAGCTGGagaagaatggacagagagacaccCCCGTCCTCCACCGGTACAGAGAGTCAACACTCAACAGCGGCCTCAACTTCAAATACGTTTTAAAGGAAAAGACTCAACTAGGTGATGACGGGGACCAGAAGCGTGTGTCGGTGCTGTCTTACCCCCAGTATTGTCGCTACCGTTCCCTATTGGCCCGGCTGAAAGAAAGACCcgcctccctcctcacctcacaGGTGGTTCTGGCCCTGGGGGGCGTGACCTCACTCACAGACCACACCCACATCCTGTACTGCAGGGACACCTTTGAACACCCCACCCTCATCGACAATGACAATGTCTGTGATGAGTTCGcTCCCAACCTGAAGGGCCGGCCTCGGAAAAAGAAGCTGTCCTTCTCGCAACGCTGCGACTCCCAGAATACACCAGCAGGCAAGGAGACGTGCAACACAGAGGGCAAGGCCCCTGCCAAGGTGAAGCCTGAGTCCAAGGCAGTGCTGTCCAGGTGGCCTAAAGGAATCAGTAGAGGCAGCAACTGCTGTAAGAGGGTCTCCCCTAAAGGAAGAacagggggaggaggtgaggagtgtCCTCCTGATGAACAGGCCTTCCTAGTAGCTCTGTATAAAtacatgaaggagaggaggacgcCCATAGAGAGGATCCCCTACCTGGGCTTCAAACAGATAAACCTTTGGAACATGTTTCAAGCAGCAGAGACCCTTGGAGGATATGAGCTGATCACATCGCGCCGACAGTGGAAACATGTTTATGACGAGTTAGGAGGAAACCCAGGAAGCACCAGCGCTGCAACCTGCACCAGACGACACTATGAAAGGCTTATCCTGCCCTATGAGAGGTTCACTAAAGGAGAGGAAGATAAGCCCCTCCCCCTATCCAAACCCCGTAAAGACCTCACCACCCAGCAGGAGGTCCCCAAGACCAAGGTTCCCACGGTGACGCAGTGGCCCAAAGAGGAGCAACACCCACAAAACCCCCAACCCCCCAGGACTGAACAGGACCCCTGTGCTAAAGGCCTGGAACTCTCACCAGAGTGTGAGGAGAAGGAAAGTAGTCCGGAGGAGGAGGGAGTCCAGGTGAAGCAGGAGGTGCCCCTGCCGGCTGGTGAGGTGAGCAGGAGCAccagtgaagaggaggaggaggagccagTAGCGGTCTGCATCAAAGAGAGGGTTCTACACCAAGGAGTTTCCTGGGAGAACATCAAGAAGCCACCTTCAGACACCACTACACTCCACTTCTTCCCTGTAGACACTCCCACTCCAATAAACCACTCCCACCCTCAGGACCAATGGCAAAAGGAGCTGCCTGACTCTGCCAACCCATGTCCCCAGGCCAGGCTGGACCAGTCTGGGTTGACTGAGGAGCCCCAGGGCCCTAACCCTGGCATGGTGGGCATAGTGGGGGTGGTGCTCCCCATTCGGCAGAGGTCCCTACAGTCCCCCAGGGCTCCAGAGGACACCACAGACAGAGCACAGCTCCCTGGACAGGACCACTCCTGTTACagatactctactatactctacccaGGCAGAGCCCATCCTGGACCTGGCATCAACCATCCAGGCACCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACCCTGGCATCAACCATCCAGGCACCAACTCTGGCACCAACCATCCAGGCACCAACCCTGGCACCAACCATCGAGGCACCAACCATCGAGGCACCAACCATCGAGGCATCAACCATCCAGGCACCAACTCTGGCACCAACCATCCAGGCACCAACCCTGGCACCAACCATCCAGGCACCAACCATCCAGGCACCAACCATCCAGGCACCAACCCTGGCACCAACTCTGGCACCAACCACCCAGGCACCATGTCTGATCTAGCCAAGAAGAAGCTGCTCTCTCAGGTCAATGGGACCGCccctgggccatctctgcccaatCACTACGCCATTggcccacccccacccctcatcaACACAAGCCTGGCTATTGGCAACGCAGAGGAGTCGGCCTGTCAGCCAATAGCAGGCTGTCAGGGTTCCTGCAGCACAGACACAGCTGTGGTCAAACGTCCGTCTGTCATCCAGCATGCCCAGAGCTTCAAGCCGCTGTTCTGCGAgacaggggaaaggagggagagggagggcctGAACAGGAACATGTATAAACCAGGGGAACCCTACTCTCCCTGTGACCTGACCCAGCACCATCCCCTATCCCATCCACCCCCCCAGACTAGACACCATCCCCAGCCCCACCCTAACTCTCCCTGTGACCTGACCCAGCTCCACCCTAACTCTCCCTATGACCTGACCCATCCCCACCCTAACTCTACCTATGACCTGACCCAGCCCCACCCTAACTCTACCGATGACCTGACCCAGCCCCACCCTAACTCTACCTATGACCTGACCCAGCCCCACCCTAACTCTACCTATGACCTGACCCAGCCCCACCCTAAACCTCCCTGTGACCTGACCCAGCCCCACCCTAACTCTCCCTGTGACCTGACCCAGCCCCACCCTAACTCTCCCTATGACCTGACCCAGCCCCACCCTAACTCTACCTATGACCTTTACCTACGGAGTCCTGAGACGCCCCAACCTGGCCACATTACCAGATTCCTGCCTGacttctccccccccctccacccccagaACCTCCACAGTTTGTACAACCATACAGAGACACACGTCAGCCAGTTCATCAgcagcagggagagggagacacccTTACCCAGGGACTGTGAGGCTGCGCCTGGCCCGGGAGGGCCACAGTTCCCCTCCTCTAAACACCCCGACACGGTGAGTCTGGGGGGCTACTGTGCCCGTATAAACCTCCTGACCCCCAACCTGACCCCTCACACACTAAGAGACATGACTTCTCTCGTACAGACAAGCTCAGAAGACCAACCCACAGACTTAAGTCTTCCCAAGTCCTCTCCTCACAAACCTACCCTCTCCACTGCCACCCCCTCCCTTCACAACAACCCCCACCCCCTCATGCCCCTCCAGGATACTGGGAGGTTCTGTAGAGTCCCCCCCATGACCATGTCCTCCAGCCCCAGACAGCCTGCAGACCCCCAGCCTAACCCCAGGGGGAAGACCCTGAATGGccagagaggaggatgggaggaccAGGGGCTGGGACACAAGATAGAGGAGCTAAACAGACCCATCCTAGGCACCAAGAATACGTCCAGACCCCAGAACAACGTGTGCACGGCGCTCCCACTGAAGAGGAGTCTGGAGGAGCGGGAGAACGGGCCCCCAGAGAGGAAGATCAGAGCTGTCACTCCCAtgcactcctcctcttcctcctcctcctgtacaatcagggacagagacagggagggccACTCGGAGTGGAAGGTCTGGACCCCAGCGCTGGAGGGGGTGGTACCAGCCGACCCCCAGCCAGCCCCGGCCCACAGCCTCCACCTACACATCACCTCCTTCGTGGAAGGACACAAGTTCCCCTTCCACTCCTCCCCCCTGTTCCCCGGGGGCCTCTACCCAGAGGCCTTCATCTCTCAGATCCAGGATATGTGTGAGGGCCACAGGCCCCTGGGGTACCACCCCCTACAGTACCTGAAGAACCAGGCCGGCCTCTCTCCTCTGGTCCCGCCCTTCGCTTTCCACTCCTTCATGATGCAAAGACAGGCGCACAGCCCCGCCCACATGTACCGGCACCCTATGGGAGCCTCGTATGGGGAACTGTTGCATCATGGTCTACACCCCATGTCTTCCATGTCTGCCCTCAACACACAGCAACACCCAGACATCAGCCCCTCACAGCTCTCCTCTGTCCACCCCAACACCAAacgatcctaaccctaaccctcccttcAGAGCCTCACAGCTCTCCTCTGTCCACCCCAACACCAAActatcataaccctaaccctcccttcAGAGCCTCACAGCTCTCCTCTGTCCACCCCAACACCAAACTGTCAGAACCCTAACCCTCCCTTCAGAGCCTCACAGCTCTCCTCTGTCCACCCCAACACCAaactatcctaaccctaaccctcccttcAGAGCCTCACAGCTCTCCTCTGTCCACCCCAACACCAaactatcctaaccctaaccctcccttcAGAGCCTCACAGCTCTCCTCTGTCCACCCCAACACCAAACTA

Function

symbol description
arid5b Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development; positive regulation of DNA-binding transcription factor activity; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B).

NR:

description
AT-rich interactive domain-containing protein 5B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960207.1 True 4747 mRNA 0.58 10 2388021 2493351

Neighbor

gene id symbol gene type direction distance location
LOC110519246 LOC106591225 coding downstream 63443 2322964 ~ 2324578 (-)
LOC110511972 LOC106613891 coding downstream 132574 2250516 ~ 2255447 (-)
LOC118943847 NA coding downstream 138221 2246705 ~ 2249800 (-)
LOC110516366 reep3 coding downstream 475351 1872701 ~ 1912670 (-)
LOC118943822 NA coding downstream 491440 1896283 ~ 1896581 (-)
LOC118943899 LOC106592999 coding upstream 20628 2513318 ~ 2528846 (-)
LOC110510403 LOC106591053 coding upstream 244740 2738091 ~ 2751875 (-)
LOC110531337 LOC105026297 coding upstream 439218 2932569 ~ 2963524 (-)
LOC110518872 LOC106594258 coding upstream 484715 2978066 ~ 3007599 (-)
LOC110518874 LOC105026292 coding upstream 516353 3009704 ~ 3012943 (-)
G1822471 NA non-coding downstream 1526 2385799 ~ 2386495 (-)
G1822414 NA non-coding downstream 17732 2369864 ~ 2370289 (-)
G1822409 NA non-coding downstream 24310 2363015 ~ 2363711 (-)
G1822393 NA non-coding downstream 59561 2326968 ~ 2328460 (-)
G1822390 NA non-coding downstream 66346 2321407 ~ 2321675 (-)
G1823141 NA non-coding upstream 12527 2505567 ~ 2506443 (-)
G1823155 NA non-coding upstream 37604 2530955 ~ 2531946 (-)
G1823163 LOC106593625 non-coding upstream 47448 2540799 ~ 2544645 (-)
G1823165 NA non-coding upstream 51779 2545130 ~ 2550018 (-)
G1823181 NA non-coding upstream 110006 2603357 ~ 2604436 (-)
G1822333 NA other downstream 137804 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 255510 2131312 ~ 2132511 (-)
G1822081 NA other downstream 496873 1888208 ~ 1891148 (-)
G1822025 NA other downstream 622484 1763993 ~ 1766638 (-)
G1821923 NA other downstream 874580 1502951 ~ 1513441 (-)
LOC118943857 LOC106563104 other upstream 789782 3281355 ~ 3325024 (-)
G1823530 NA other upstream 1012226 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 1061662 3553536 ~ 3601859 (-)

Expression


Co-expression Network