LOC118943899 (LOC106592999)


Basic Information

Item Value
gene id LOC118943899
gene name LOC106592999
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2513318 ~ 2528846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960761.1
TGTCTGAAGGAGGCTTCCCTGTTGGACTACTTTGTCTCTGGCTTCTGGTGGACCAGGGAGATGAACTACACCTGTCAACAGATCTCATTCATCATGGCTCTACTGCAATTGTTACTGGACAATATCAGTGAGGACCATAGAGGTGATCAGCTCAGCAGACTTTGTAGCCCCACTGGAGGAAGGCATGAATACTGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagagggacagaggaccagccaggaggaggatggagaggtacCAGGTGAAACAGCTctggagcaggagaaggagaacAAGGCTACAGGGTTGGAAGGATACAACGTTCAGGATGTCAAAGACGTGCTGGGAGACCTGACCAAAGAGATGCTGGGAACCCTACAGGCTGAATTCACAGAGAAGCTGAGAGTCCAGGAGGAGAGTTTCAGTACCAGACTAGAACCACTGAAACATTCTGCCTGCAAATAGCTACAATACACCTCATAGTATAACATATCCACTATGAACACAATACACCTcacagtctataatatatccacaatacaccacacagtctCTAACAtatccacaatacaccacacagtctataatatatccataatacaccacacagtcta
>XM_036960756.1
CATGTTGCCATGGTAACGCCGATGACTAAAACATGTCTGCAAAAGCGAAACAAAGCAACAAGTCAGCGGATAAAAATGCAAACGATAGAAATGACGTTGCGTCCAAAGAAAATTATGCTGAAAAAGCCAACCCTCAATGGAAACTTATTTCCCATGAACAAATCAACACGCTGTTGGATTTGACAGTGGAACAAGTGCAATTCCAGTTTGAAGAAATACTTGGTTTGAAGAACTACCAGACGTGTCTGAAGGAGGCTTCCCTGTTGGACTACTTTGTCTCTGGCTTCTGGTGGACCAGGGAGATGAACTACACCTGTCAACAGATCTCATTCATCATGGCTCTACTGCAATTGTTACTGGACAATATCAGTGAGAAGCAGATGCCGTTTGTTGATAACCTGAATGAGTTTGCCAAGATGATATCAGGAACGCGCCAGTCTCCTTCTCCAGAGGTTGACTCACTGTTTGATGCTGAGCAGGCCATGTCCATCACTGACTACCTGAAGTGCAGTCTCTTTCAGAACTACCAACTCTATGAGTTTCTCTTCAGCCAACCTAGAGAGGAGCTGCTCCTTGGGAAGAAGAGGACCATAGAGGTGATCAGCTCAGCAGACTTTGTAGCCCCACTGGAGGAAGGCATGAATACTGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagagggacagaggaccagccaggaggaggatggagaggtacCAGGTGAAACAGCTctggagcaggagaaggagaacAAGGCTACAGGGTTGGAAGGATACAACGTTCAGGATGTCAAAGACGTGCTGGGAGACCTGACCAAAGAGATGCTGGGAACCCTACAGGCTGAATTCACAGAGAAGCTGAGAGTCCAGGAGGAGAGTTTCAGTACCAGACTAGAACCACTGAAACATTCTGCCTGCAAATAGCTACAATACACCTCATAGTATAACATATCCACTATGAACACAATACACCTcacagtctataatatatccacaatacaccacacagtctCTAACAtatccacaatacaccacacagtctataatatatccataatacaccacacagtcta
>XM_036960760.1
CATGTTGCCATGGTAACGCCGATGACTAAAACATGTCTGCAAAAGCGAAACAAAGCAACAAGTCAGCGGATAAAAATGCAAACGATAGAAATGACGTTGCGTCCAAAGAAAATTATGCTGAAAAAGCCAACCCTCAATGGAAACTTATTTCCCATGAACAAATCAACACGCTGTTGGATTTGACAGTGGAACAAGTGCAATTCCAGTTTGAAGAAATACTTGGTTTGAAGAACTACCAGACGTGTCTGAAGGAGGCTTCCCTGTTGGACTACTTTGTCTCTGGCTTCTGGTGGACCAGGGAGATGAACTACACCTGTCAACAGATCTCATTCATCATGGCTCTACTGCAATTGTTACTGGACAATATCAGTGAGAAGCAGATGCCGTTTGTTGATAACCTGAATGAGTTTGCCAAGATGATATCAGGAACGCGCCAGTCTCCTTCTCCAGAGGTTGACTCACTGTTTGATGCTGAGCAGGCCATGTCCATCACTGACTACCTGAAGTGCAGTCTCTTTCAGAACTACCAACTCTATGAGTTTCTCTTCAGCCAACCTAGAGAGGAGCTGCTCCTTGGGAAGAAGAGGACCATAGAGGTGATCAGCTCAGCAGACTTTGTAGCCCCACTGGAGGAAGGCATGAATACTGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagagggacagaggaccagccaggaggaggatggagaggtacCAGGTGAAACAGCTctggagcaggagaaggagaacAAGGCTACAGGGTTGGAAGGATACAACGTTCAGGATGTCAAAGACGTGCTGGGAGACCTGACCAAAGAGATGCTGGGAACCCTACAGGCTGAATTCACAGAGAAGCTGAGAGTCCAGGAGGAGAGTTTCAGTACCAGACTAGAACCACTGAAACATTCTGCCTGCAAATAGCTACAATACACCTCATAGTATAACATATCCACTATGAACACAATACACCTcacagtctataatatatccacaatacaccacacagtctCTAACAtatccacaatacaccacacagtctataatatatccataatacaccacacagtcta
>XM_036960757.1
ttaatttgtcgctagaggggtctgaatactcgctaaGTTGACAACACTGCGATTCTAGAATCAGCTTTATCCATCTCGATAGACTAGACTGCCCAGAAGCTCACCGCCCGGAAGCTCATCACCCGGACCGGAAGCTCACCGCCCGTCCACTGTGGACATGTTGCCATGGAAAATTATGCTGAAAAAGCCAACCCTCAATGGAAACTTATTTCCCATGAACAAATCAACACGCTGTTGGATTTGACAGTGGAACAAGTGCAATTCCAGTTTGAAGAAATACTTGGTTTGAAGAACTACCAGACGTGTCTGAAGGAGGCTTCCCTGTTGGACTACTTTGTCTCTGGCTTCTGGTGGACCAGGGAGATGAACTACACCTGTCAACAGATCTCATTCATCATGGCTCTACTGCAATTGTTACTGGACAATATCAGTGAGAAGCAGATGCCGTTTGTTGATAACCTGAATGAGTTTGCCAAGATGATATCAGGAACGCGCCAGTCTCCTTCTCCAGAGGTTGACTCACTGTTTGATGCTGAGCAGGCCATGTCCATCACTGACTACCTGAAGTGCAGTCTCTTTCAGAACTACCAACTCTATGAGTTTCTCTTCAGCCAACCTAGAGAGGAGCTGCTCCTTGGGAAGAAGAGGACCATAGAGGTGATCAGCTCAGCAGACTTTGTAGCCCCACTGGAGGAAGGCATGAATACTGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagagggacagaggaccagccaggaggaggatggagaggtacCAGGTGAAACAGCTctggagcaggagaaggagaacAAGGCTACAGGGTTGGAAGGATACAACGTTCAGGATGTCAAAGACGTGCTGGGAGACCTGACCAAAGAGATGCTGGGAACCCTACAGGCTGAATTCACAGAGAAGCTGAGAGTCCAGGAGGAGAGTTTCAGTACCAGACTAGAACCACTGAAACATTCTGCCTGCAAATAGCTACAATACACCTCATAGTATAACATATCCACTATGAACACAATACACCTcacagtctataatatatccacaatacaccacacagtctCTAACAtatccacaatacaccacacagtctataatatatccataatacaccacacagtcta
>XM_036960759.1
CATGTTGCCATGGTAACGCCGATGACTAAAACATGTCTGCAAAAGCGAAACAAAGCAACAAGTCAGCGGATAAAAATGCAAACGATAGAAATGACGTTGCGTCCAAAGAAAATTATGCTGAAAAAGCCAACCCTCAATGGAAACTTATTTCCCATGAACAAATCAACACGCTGTTGGATTTGACAGTGGAACAAGTGCAATTCCAGTTTGAAGAAATACTTGGTTTGAAGAACTACCAGACGTGTCTGAAGGAGGCTTCCCTGTTGGACTACTTTGTCTCTGGCTTCTGGTGGACCAGGGAGATGAACTACACCTGTCAACAGATCTCATTCATCATGGCTCTACTGCAATTGTTACTGGACAATATCAGTGAGAAGCAGATGCCGTTTGTTGATAACCTGAATGAGTTTGCCAAGATGATATCAGGAACGCGCCAGTCTCCTTCTCCAGAGGTTGACTCACTGTTTGATGCTGAGCAGGCCATGTCCATCACTGACTACCTGAAGTGCAGTCTCTTTCAGAACTACCAACTCTATGAGTTTCTCTTCAGCCAACCTAGAGAGGAGCTGCTCCTTGGGAAGAAGAGGACCATAGAGGTGATCAGCTCAGCAGACTTTGTAGCCCCACTGGAGGAAGGCATGAATACTGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTACCTCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACAACCTCATTACTCCTGTTGAACAGCAGGAAGAGGTACTCTACTATAGGACTACTGATGACTACCTCATTACATGACTCCTGTTGAACAGCATgaagaggtactgtactgtaggactactGATGACAACCTCATTACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACAACCTCATTACTCCTGTTGAACAGCAGGAAGAGGTACTCTACTATAGGACTACTGATGACTACCTCATTACATGACTCCTGTTGAACAGCAGgaagaggtactgtactgtaggactactGATGACTGCCTCATTACATGACTCCTGTTTAACAGCAGGAAGAGGTACTGTAATTGACTCTACCATGGGCTCTGCTTAGGTTACTTCTCACAGCTGATGTTTTTATATTTTCGTGTACTATCTGGATTTAAAAGACAAGTAGATTAATAAATAATACAGATTGTATTATTGTGTATTATTTCTGAGTTAGTGTCACTCCTATTCCAAAACTCCTATTCCAAGTCAGTGATCCTGCTATTTCCCATAAGACCACAGGTGGGTGCTGTCACACTGTTGAAGACCTCTTCACTGAGAACTGAAGCTTGACTTTATGACTGATCAATGTgttaccactactactagtacATACCATAACGGTTGATTTGAACATGTAGCAACAGAATGTAAGGGTAGGAGATTGTAGTTAAATACCATAACGGTTGATTTGAACATGTAGCAACAGAATGTCTGATACTGACCCAGGGACAGAGGACCAGCCTgtctgataggtggtgttctgttgacccagggacagaggaccagcctgtctg
>TU2087084
cccagggACAGAGGACCTTCATgtctgataggtggtgttctgttgacccagggacagaggaccagcctgtctgataggtggtgttctgttgacccagagggccagcctgtctgataggtggtgttctgttgacccagggACAGAGGACCTTCCTGTCTGATAGatggtgttctgttgacccagggacagaggaccagcctgtctgatagatggtgttctgttgacccagggacagaggaccagccaggaggaggatggagaggtacCAGGTGAAACAGCTctggagcaggagaaggagaacAAGGCTACAGGGTTGGAAGGATACAACGTTCAGGATGTCAAAGACGTGCTGGGAGACCTGACCAAAGAGATGCTGGGAACCCTACAGGCTGAATTCACAGAGAAGCTGAGAGTCCAGGAGGAGAGTTTCAGTACCAGACTAGAACCACTGAAACATTCTGCCTGCAAATAGCTACAATACACCTCATAGTATAACATATCCACTATGAACACAATACACtacacagtctataatatatccacaatacaccacacagtctataatatatccacaatacaccacacagtctCTAACAtatccacaatacaccacacagtctataatatatccactatgaacacaatacaccacacagtctataatatatccactatgaacacaatacaccacacagtctataatatatccacaatacaccacacagtctataatatatccactATGAACACAATAcaccaaccacccgagccactgcctgttcaccccgctaccatccagaaggcgaggtcagtgcaggtgcatcaaagctgggaccaagagactgaaaaacacctTCTATTTCAAGGCAATCAGACttaaataaccatcactagccagctaccacccagttactcatccctgcaccttagaggctgctgccctatatacagagACATGGATTCACGGGTCACTTTAATAATCGAACACTAGTctgtttaataatgtttacatacttctttactcatttcatatgtatataggACC

Function

NR:

description
PREDICTED: uncharacterized protein C10orf107 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960761.1 False 1158 mRNA 0.46 4 2513979 2528205
XM_036960756.1 False 1612 mRNA 0.45 8 2513979 2528690
XM_036960760.1 False 1084 mRNA 0.45 8 2513979 2528690
XM_036960757.1 False 1673 mRNA 0.46 8 2513979 2528846
XM_036960759.1 False 2146 mRNA 0.44 6 2520213 2528690
TU2087084 True 1045 TUCP 0.46 4 2513318 2516923

Neighbor

gene id symbol gene type direction distance location
LOC118943863 arid5b coding downstream 20628 2388021 ~ 2493351 (-)
LOC110519246 LOC106591225 coding downstream 189401 2322964 ~ 2324578 (-)
LOC110511972 LOC106613891 coding downstream 258532 2250516 ~ 2255447 (-)
LOC118943847 NA coding downstream 264179 2246705 ~ 2249800 (-)
LOC110516366 reep3 coding downstream 601309 1872701 ~ 1912670 (-)
LOC110510403 LOC106591053 coding upstream 209245 2738091 ~ 2751875 (-)
LOC110531337 LOC105026297 coding upstream 403723 2932569 ~ 2963524 (-)
LOC110518872 LOC106594258 coding upstream 449220 2978066 ~ 3007599 (-)
LOC110518874 LOC105026292 coding upstream 480858 3009704 ~ 3012943 (-)
LOC110518781 entpd1 coding upstream 571718 3100564 ~ 3172786 (-)
G1823141 NA non-coding downstream 7536 2505567 ~ 2506443 (-)
G1822505 NA non-coding downstream 49561 2463397 ~ 2464418 (-)
G1822501 NA non-coding downstream 69166 2444433 ~ 2444813 (-)
G1822474 NA non-coding downstream 118637 2395141 ~ 2395342 (-)
G1822473 NA non-coding downstream 120476 2393225 ~ 2393503 (-)
G1823155 NA non-coding upstream 2109 2530955 ~ 2531946 (-)
G1823163 LOC106593625 non-coding upstream 11953 2540799 ~ 2544645 (-)
G1823165 NA non-coding upstream 16284 2545130 ~ 2550018 (-)
G1823181 NA non-coding upstream 74511 2603357 ~ 2604436 (-)
G1823195 NA non-coding upstream 115744 2644590 ~ 2647338 (-)
G1822333 NA other downstream 263762 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 381468 2131312 ~ 2132511 (-)
G1822081 NA other downstream 622831 1888208 ~ 1891148 (-)
G1822025 NA other downstream 748442 1763993 ~ 1766638 (-)
LOC118943857 LOC106563104 other upstream 754287 3281355 ~ 3325024 (-)
G1823530 NA other upstream 976731 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 1026167 3553536 ~ 3601859 (-)
LOC118943842 LOC106577176 other upstream 1262185 3791031 ~ 3820702 (-)
G1823691 NA other upstream 1315647 3844493 ~ 3846920 (-)
LOC118943822 NA coding downstream 616737 1896283 ~ 1896581 (-)

Expression


Co-expression Network