LOC110531337 (LOC105026297)


Basic Information

Item Value
gene id LOC110531337
gene name LOC105026297
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2932569 ~ 2963524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960370.1
acacctgttgattatgaagcatgtgacaaataacatttgattagatCTGATGGTTTGCCACCAGAGGTGAAAGTAGGAGCCTGCAGCATATTGTCACATTTCAAATGAAGCATTTACTGTCCTTGTCCTTTATTTGTGATGAAAATAGAGATGAACGTGATGAAAAGGCGACAGAGGTTTCATAGGAGCTGCGACACAGGGCGCAGCAGAGTAATCTGGTTACATCAACCGTCATTTAATTCATTTTTTCTGCTAATCCCTGCTCTATGTCCTCTGCCCTGAGGCTGAATAAACACACGTGGCCTGTTACATCAGTAACGCATTAATAATTAAATAACGTGtctaatagataatgtcatgttctctcctttttctccatTTCTTTCCGTTTATCCACTGCGTCTCAGCGGGGACCGTTTGTCCAAGTAGTGCCGTGCCATGCTGCTGTGCTGAAGCTGCTTGAGCACTGGAAGGGGACccgagaggagcaggggaggggatcagaggaggaagggaggggaggaggggcggGGAGCACTGAGCACAGCGAGTGACTGGACTGTGTATTGAAGGTGAAGATCAGTCCAGcaccacaaagagacaacagTAGGAGACGTTGTAAAGGCCATGGAGGTTCCGCGTGTGGACGACAGCACCAGCAGCCCTGTCAGCCGTTGTGACGACATGATGAAGAACCTGAATTTGGACTTGATACAGCCGAGTGACAGGGAAGGAGACAACTCTCAGGACAGCAGCATCGTGGAAAAGGAGGATCTTCCTGTTCCTCAGAACGTCAAGATCACCAACATCACCTGTGACTCCTTCAAGATCAACTGGGACATGGACTGTAGAGCCAAGGACCACATCACTAACTACTTCATAGACCTCAACAAGAAGGAGCACAATAACTCCAACAAGTTCAAACACAAGGATGTCCCCACTAAGCTGGTGGCGAAGGTGGTGCCACTGCCCATGACAGTGAGAGGCCACTGGTTCCTGAGCCCCAGGACAGATTACACTGTAGCTGTCCAGACTGCCTCCAAACAGAGTGACGGGAACTATGCTGTCTCTGAATGGAGTGAGATCATCGAATTCTACACTGCAGACTACTCTACTGTGCATCTGATACAGTTGCTGGAGAAGGCCGAGGTGATAGCTGGTAGGATGTTGAGATTCTCAGTGTTTTATCGGAACCAGCAGAATGACTACTTCAATAAAACGAGAGAGACACAGGACAACCGGATGCTCCCGACTGTAAAGGACAACAGTGGCAGCCACGGCTCTCCCATCAGTGGCAAGCTGGAAGGCATCTACTTCAGCTGCAACACGGAGTTCAACACAGGCAAGCCCCCCCAGGACTCCCCCTACGGACGCTACCGCTTCGAGATCCAGGCCGAGGTCCTTTTCAACCCCAAGACCAACCTGTACTTTGGGGACTTCTACTGCATGTACACAGCCTACCACTACGTGATCCTGGTGCTGGCCCCAGAGGGCTCCCCAGGGGACCGATTCTGTAAGGGCCGCCTCCCGGCGCTGGACATCTTAGACAACTGCTTCCTGACATGCacccaggaggaggaggagggggggcggCTGGTGTTCCACCACGCCCAGGATGTGATTCTCGAGGTGATTTACACCGAACCCGTGGACCTGGCCCTAGGCAGCGTGGAGGAGATCCAAGGACACCAGCTCAGTAGCATGTCCACCATCAATGCTAAGAAGGACCCCAGTTGTAAGACCTGCAACATCAGCGTGGGACGCTAACCAGCAaacagtggggagggagggggcgtTGCTACGAGGTCCCTGCAGTTCTACGGAAAATAATACTTCTCTAACCCTATTGGCTGTGGTGATTCTCTAATCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGCGATTCTCTAACCCTACTGGCTGTGGTGATTCTCTAACCCTACTGGCAGTGATGCTTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTACTGGCAGTGATGATTCTCTAACCCTATTGGCTGTGGTGATTCTCTAACCCTATTGGCTGTGGTGACTCTCTAACCCTACTGGCTGTGATGATTCTCCAACCCTACTGGCTGGTGTGACTCTCTAACCCTATTGGCTGTGGTGATTCTAACAGTCATATTATACATATTAACAGTCTAACAGTCATATTATACAGGTGCAATGTAATGATATGCCAAAGGTAACAACACCTTGACCAAGCTGCTAGAAACAAGCCGTGGTAACAGCTTCAACAAGGCATAATGGATTAGTATTACGTAACATGGTCTTGTAATGGAATGTGATTTCTGGATGATTCTACGGTAGTGATTAAATCCGATCGTGGGTTATAGGTATTGCGGTTTTTAAAGACAAGTTCCTATGGAGCTGACATATCCAGCGTTTACAGTGAATGGGATCTCCACGAATGAAGGAACAATACCTATAACCCGCAATgggattgaatcccagcctgaAGCATGGCAGGTTGCAGCATTACACTGATGTCAGTCTGATGTCTTCACATCCTCGTTGTTGTCTGATGGGTTCTGTGTTATATGTGTTGCAATCATTAACAGAAACCACATTATCCTGTGTTCAACATA

Function

NR:

description
phytanoyl-CoA hydroxylase-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960370.1 True 2727 mRNA 0.49 5 2932569 2963524

Neighbor

gene id symbol gene type direction distance location
LOC110510403 LOC106591053 coding downstream 180694 2738091 ~ 2751875 (-)
LOC118943899 LOC106592999 coding downstream 403723 2513318 ~ 2528846 (-)
LOC118943863 arid5b coding downstream 439218 2388021 ~ 2493351 (-)
LOC110519246 LOC106591225 coding downstream 607991 2322964 ~ 2324578 (-)
LOC110511972 LOC106613891 coding downstream 677122 2250516 ~ 2255447 (-)
LOC110518872 LOC106594258 coding upstream 14542 2978066 ~ 3007599 (-)
LOC110518874 LOC105026292 coding upstream 46180 3009704 ~ 3012943 (-)
LOC110518781 entpd1 coding upstream 137040 3100564 ~ 3172786 (-)
trnal-uaa-60 NA coding upstream 212535 3176059 ~ 3176131 (-)
trnav-uac-24 NA coding upstream 213320 3176844 ~ 3176916 (-)
G1823342 NA non-coding downstream 6957 2924732 ~ 2925612 (-)
G1823340 NA non-coding downstream 13829 2916262 ~ 2918740 (-)
G1823337 LOC106593456 non-coding downstream 21884 2909805 ~ 2910685 (-)
G1823312 NA non-coding downstream 61909 2869847 ~ 2870660 (-)
G1823306 NA non-coding downstream 77496 2853613 ~ 2855073 (-)
G1823331 NA non-coding upstream 8420 2971944 ~ 2973007 (-)
G1823329 NA non-coding upstream 10015 2973539 ~ 2974094 (-)
G1823360 NA non-coding upstream 31006 2994530 ~ 2995619 (-)
G1823368 NA non-coding upstream 44669 3008193 ~ 3028448 (-)
G1823373 NA non-coding upstream 56152 3019676 ~ 3096501 (-)
G1823141 NA other downstream 426126 2505567 ~ 2506443 (-)
G1822333 NA other downstream 682352 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 800058 2131312 ~ 2132511 (-)
G1822081 NA other downstream 1041421 1888208 ~ 1891148 (-)
LOC118943857 LOC106563104 other upstream 319609 3281355 ~ 3325024 (-)
G1823530 NA other upstream 542053 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 591489 3553536 ~ 3601859 (-)
LOC118943842 LOC106577176 other upstream 827507 3791031 ~ 3820702 (-)
G1823691 NA other upstream 880969 3844493 ~ 3846920 (-)

Expression


Co-expression Network