LOC110518872 (LOC106594258)


Basic Information

Item Value
gene id LOC110518872
gene name LOC106594258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2978066 ~ 3007599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959685.1
TCCCACAATGCAGCGGAGCGGTGAAGGCGGGTTATCCGTGCATGGCAGGGGCAAACGGACATTATTGAATTAGGTAGCTAATAAACAACGAGGAACTTGTGAGCCAGTCAGTACGGGACAGTACCATTGTTGTCTCTGTCAAAGCTGTATCCTGACCGTCTAGTCAACCAGACATGGCACCTTTCGGTCTGATGTTTTCTGGGGTTTGCCTTTTGAAAAAGTCATTCAGTCTCTTCTCCCACGCATCCAGTCTTACAAGGCCTCCTGTTTGGACGGGggctggtgcttgctggactgtAAATTCATCAAGGCTCGTCAATGTGATCCCAGCGGTAAAGAGTTTGACCACCATTGCAGGCGCTCCCCCTAAGAGGCCCCTGAACGGATACATGAGATTTGTGAAACAGCAACAACCTCTCGTTGTCAGGGAGTATCCAGATGTCAAAGCTGTCGATGTGATAAGGAAGATTGCACAACAGTGGAGAACTCTGACAGCAGACCAGAAACAGCCTTTTCAACAGGCGTCAGTGGTTGCCAGGGAACAGTTTAAGGTGGACATGCAGAGGTACCAGTCCCAGCTCACACCTGCACAGGCTGCTGCTCTGAAACAGGAGAGGAGATGTAGGCTGGCCAAGAGGAAAGCCATcaggaggaagaggGAGTTGAACAGTCTTGGCAAACCCAAACGTCCCCGGTCGTCCTTTAACATCTTCATGGCAGAACACTTTGAGGAGTCCAGGGGGACGACCACACAGGGCAAGATGAAGATGCTGCGGGAGGACTGGACCAAACTGTCAACCTCACAGAAACAAGTCTACATGCAGCTGGCGGAGGATGATAAAGTGCGCTATAAGAATGAGATGAAGTCCTGGGAGGAACACATGATGGATATTGGACGGGAGGACCTGATCAGACGGAAAGAGACCCACAAGAACAAAACTGCTACTAAAGGAGGCAAACAGAAATCCAAAGTGAAAGAGGTGAAAACTAAATCTGCAGGAGCTACGACAGTGAGGAGCGGGAAAAAGGCCTGAGCTGTTCTGGAGAGGAAGGGTGATGAAGGACCCTGTTCAAAGATGGAGTGGGACTGAATGATCTGAGGGGGGcgctctcttctctccctgtgcctctcctccctcactcttctcTCCTTCTTTGGTGCAACATGGGCCTCTTCCTTTAACCTGGGGGAAGGAGTTCAATGTTAACATGTATTCTTCTAAACTGGATCCTTGGTAGTCTAATGGAATGTGTCTTCAAGCAATACAGTTGACACTCACTCATCTTTACTCTTCCTCAGAGAATGGACATTGGGTACGAAGGTTTTCTGTAATAAAAATATCAATTTATTAATTTCTA
>XM_036959686.1
TCCCACAATGCAGCGGAGCGGTGAAGGCGGGTTATCCGTGCATGGCAGGGGCAAACGGACATTATTGAATTAGGTAGCTAATAAACAACGAGGAACTTGTGAGCCAGTCAGTACGGGACAGTACCATTGTTGTCTCTGTCAAAGCTGTATCCTGACCGTCTAGTCAACCAGACATGGCACCTTTCGGTCTGATGTTTTCTGGGGTTTGCCTTTTGAAAAAGTCATTCAGTCTCTTCTCCCACGCATCCAGTCTTACAAGGCCTCCTGTTTGGACGGGggctggtgcttgctggactgtAAATTCATCAAGGCTCGTCAATGTGATCCCAGCGGTAAAGAGTTTGACCACCATTGCAGGCGCTCCCCCTAAGAGGCCCCTGAACGGATACATGAGATTTGTGAAACAGCAACAACCTCTCGTTGTCAGGGAGTATCCAGATGTCAAAGCTGTCGATGTGATAAGGAAGATTGCACAACAGTGGAGAACTCTGACAGCAGACCAGAAACAGCCTTTTCAACAGGCGTCAGTGGTTGCCAGGGAACAGTTTAAGGTGGACATGCAGAGGTACCAGTCCCAGCTCACACCTGCACAGGCTGCTGCTCTGAAACAGGAGAGGAGATGTAGGCTGGCCAAGAGGAAAGCCATcaggaggaagaggGAGTTGAACAGTCTTGGCAAACCCAAACGTCCCCGGTCGTCCTTTAACATCTTCATGGCAGAACACTTTGAGGAGTCCAGGGGGACGACCACACAGGGCAAGATGAAGATGCTGCGGGAGGACTGGACCAAACTGTCAACCTCACAGAAACAAGTCTACATGCAGCTGGCGGAGGATGATAAAGTGCGCTATAAGAATGAGATGAAGTCCTGGGAGGAACACATGATGGATATTGGACGGGAGGACCTGATCAGACGGAAAGAGACCCACAAGAACAAAACTGCTACTAAAGGAGGCAAACAGAAATCCAAAGTGAAAGAGGTGAAAACTAAATCTGCAGGAGCTACGACAGTGAGGAGCGGGAAAAAGGCCTGAGCTGTTCTGGAGAGGAAGGGTGATGAAGGACCATGCCTGACAACTCCTGGctgtcccctctcctccaggtcatgctgctgatccagtttccgctgttctgcctgcggctatggaacccttaggcatgaagtcataaacagcgcaatgcttgaagcacagcgaagagctgctggcaaacgcagtaaagtgctgtttgaatgaattaattcgagcctgctgctgcctaccaccgctcagtcagactgctctatcaaatatcaaatcatagacttaattataatataataacacacagaaatatga
>XM_036959683.1
TCCCACAATGCAGCGGAGCGGTGAAGGCGGGTTATCCGTGCATGGCAGGGGCAAACGGACATTATTGAATTAGGTAGCTAATAAACAACGAGGAACTTGTGAGCCAGTCAGTACGGGACAGTACCATTGTTGTCTCTGTCAAAGCTGTATCCTGACCGTCTAGTCAACCAGACATGGCACCTTTCGGTCTGATGTTTTCTGGGGTTTGCCTTTTGAAAAAGTCATTCAGTCTCTTCTCCCACGCATCCAGTCTTACAAGGCCTCCTGTTTGGACGGGggctggtgcttgctggactgtAAATTCATCAAGGCTCGTCAATGTGATCCCAGCGGTAAAGAGTTTGACCACCATTGCAGGCGCTCCCCCTAAGAGGCCCCTGAACGGATACATGAGATTTGTGAAACAGCAACAACCTCTCGTTGTCAGGGAGTATCCAGATGTCAAAGCTGTCGATGTGATAAGGAAGATTGCACAACAGTGGAGAACTCTGACAGCAGACCAGAAACAGCCTTTTCAACAGGCGTCAGTGGTTGCCAGGGAACAGTTTAAGGTGGACATGCAGAGGTACCAGTCCCAGCTCACACCTGCACAGGCTGCTGCTCTGAAACAGGAGAGGAGATGTAGGCTGGCCAAGAGGAAAGCCATcaggaggaagaggGAGTTGAACAGTCTTGGCAAACCCAAACGTCCCCGGTCGTCCTTTAACATCTTCATGGCAGAACACTTTGAGGAGTCCAGGGGGACGACCACACAGGGCAAGATGAAGATGCTGCGGGAGGACTGGACCAAACTGTCAACCTCACAGAAACAAGTCTACATGCAGCTGGCGGAGGATGATAAAGTGCGCTATAAGAATGAGATGAAGTCCTGGGAGGAACACATGATGGATATTGGACGGGAGGACCTGATCAGACGGAAAGAGACCCACAAGAACAAAACTGCTACTAAAGGAGGCAAACAGAAATCCAAAGTGAAAGAGGTGAAAACTAAATCTGCAGGAGCTACGACAGTGAGGAGCGGGAAAAAGGCCTGAGCTGTTCTGGAGAGGAAGGGTGATGAAGGCAAGTTACCGTcccaaataaaatacattttgtttataGTCATATCAATGCTCCTAGCGCCTCAAACTGTGAATGAACCTTCACCAGTCTGGGAAAGATCATGAAACATAACATTCTCAACTGACAGTTATCAGAATGAGAATTCACTGTAAACTATCATAAAGCAGTGTTCTTTCTAGTATGAAAAGATGAATTATGTTGAAGTTAAGTTCCTGTCACCAGGGCCACGTTCtgtatatactgtctctatacacaGTGTACAGGCTAGTCTGTACTGGATATAGTCTTTAAGAGACGTGTTGACCAGTTACTTTGTTTGTAGACTTAGTTTTCGTTCATGTTTTGTATCTAATTTTTATTAAATAAACATTTACGTACATAAAAAAAAGACTTCATATTATACACAATGTTTATACAGTGAAAACAAATTGGGAGGAAATCGACAAGGTACATAAACGCTGTATGATGAAAGTAAACTATGTACAATATCTACACAGTTAATCCTCACATCGTGTAATAAAACTGTACAATGTCTA
>XM_036959687.1
TTCCCACAATGCAGCGGAGCGGTGAAGGCGGGTTATCCGTGCATGGCAGGGGCAAACGGACATTATTGAATTAGGTAGCTAATAAACAACGAGGAACTTGTGAGCCAGTCAGTACGGGACAGTACCATTGTTGTCTCTGTCAAAGCTGTATCCTGACCGTCTAGTCAACCAGACATGGCACCTTTCGGTCTGATGTTTTCTGGGGTTTGCCTTTTGAAAAAGTCATTCAGTCTCTTCTCCCACGCATCCAGTCTTACAAGGCTCGTCAATGTGATCCCAGCGGTAAAGAGTTTGACCACCATTGCAGGCGCTCCCCCTAAGAGGCCCCTGAACGGATACATGAGATTTGTGAAACAGCAACAACCTCTCGTTGTCAGGGAGTATCCAGATGTCAAAGCTGTCGATGTGATAAGGAAGATTGCACAACAGTGGAGAACTCTGACAGCAGACCAGAAACAGCCTTTTCAACAGGCGTCAGTGGTTGCCAGGGAACAGTTTAAGGTGGACATGCAGAGGTACCAGTCCCAGCTCACACCTGCACAGGCTGCTGCTCTGAAACAGGAGAGGAGATGTAGGCTGGCCAAGAGGAAAGCCATcaggaggaagaggGAGTTGAACAGTCTTGGCAAACCCAAACGTCCCCGGTCGTCCTTTAACATCTTCATGGCAGAACACTTTGAGGAGTCCAGGGGGACGACCACACAGGGCAAGATGAAGATGCTGCGGGAGGACTGGACCAAACTGTCAACCTCACAGAAACAAGTCTACATGCAGCTGGCGGAGGATGATAAAGTGCGCTATAAGAATGAGATGAAGTCCTGGGAGGAACACATGATGGATATTGGACGGGAGGACCTGATCAGACGGAAAGAGACCCACAAGAACAAAACTGCTACTAAAGGAGGCAAACAGAAATCCAAAGTGAAAGAGGTGAAAACTAAATCTGCAGGAGCTACGACAGTGAGGAGCGGGAAAAAGGCCTGAGCTGTTCTGGAGAGGAAGGGTGATGAAGGCAAGTTACCGTcccaaataaaatacattttgtttataGTCATATCAATGCTCCTAGCGCCTCAAACTGTGAATGAACCTTCACCAGTCTGGGAAAGATCATGAAACATAACATTCTCAACTGACAGTTATCAGAATGAGAATTCACTGTAAACTATCATAAAGCAGTGTTCTTTCTAGTATGAAAAGATGAATTATGTTGAAGTTAAGTTCCTGTCACCAGGGCCACGTTCtgtatatactgtctctatacacaGTGTACAGGCTAGTCTGTACTGGATATAGTCTTTAAGAGACGTGTTGACCAGTTACTTTGTTTGTAGACTTAGTTTTCGTTCATGTTTTGTATCTAATTTTTATTAAATAAACATTTACGTACATAAAAAAAAGACTTCATATTATACACAATGTTTATACAGTGAAAACAAATTGGGAGGAAATCGACAAGGTACATAAACGCTGTATGATGAAAGTAAACTATGTACAATATCTACACAGTTAATCCTCACATCGTGTAATAAAACTGTACAATGTCTA

Function

NR:

description
transcription factor A, mitochondrial-like

GO: NA

KEGG:

id description
K11830 TFAM, MTTFA; transcription factor A, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959685.1 False 1359 mRNA 0.49 9 2978066 3007598
XM_036959686.1 False 1337 mRNA 0.50 9 2981901 3007598
XM_036959683.1 False 1598 mRNA 0.45 8 2990512 3007598
XM_036959687.1 True 1548 mRNA 0.44 7 2990512 3007599

Neighbor

gene id symbol gene type direction distance location
LOC110531337 LOC105026297 coding downstream 14542 2932569 ~ 2963524 (-)
LOC110510403 LOC106591053 coding downstream 226191 2738091 ~ 2751875 (-)
LOC118943899 LOC106592999 coding downstream 449220 2513318 ~ 2528846 (-)
LOC118943863 arid5b coding downstream 484715 2388021 ~ 2493351 (-)
LOC110519246 LOC106591225 coding downstream 653488 2322964 ~ 2324578 (-)
LOC110518874 LOC105026292 coding upstream 2105 3009704 ~ 3012943 (-)
LOC110518781 entpd1 coding upstream 92965 3100564 ~ 3172786 (-)
trnal-uaa-60 NA coding upstream 168460 3176059 ~ 3176131 (-)
trnav-uac-24 NA coding upstream 169245 3176844 ~ 3176916 (-)
trnav-uac-25 NA coding upstream 176103 3183702 ~ 3183774 (-)
G1823329 NA non-coding downstream 3972 2973539 ~ 2974094 (-)
G1823331 NA non-coding downstream 5059 2971944 ~ 2973007 (-)
G1823349 NA non-coding downstream 17410 2960389 ~ 2960656 (-)
G1823324 NA non-coding downstream 29353 2943859 ~ 2948713 (-)
G1823342 NA non-coding downstream 52454 2924732 ~ 2925612 (-)
G1823368 NA non-coding upstream 594 3008193 ~ 3028448 (-)
G1823373 NA non-coding upstream 12077 3019676 ~ 3096501 (-)
G1823374 LOC106598281 non-coding upstream 12292 3019891 ~ 3021385 (-)
G1823375 NA non-coding upstream 14743 3022342 ~ 3023321 (-)
G1823381 NA non-coding upstream 39547 3047146 ~ 3049540 (-)
G1823141 NA other downstream 471623 2505567 ~ 2506443 (-)
G1822333 NA other downstream 727849 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 845555 2131312 ~ 2132511 (-)
G1822081 NA other downstream 1086918 1888208 ~ 1891148 (-)
LOC118943857 LOC106563104 other upstream 275534 3281355 ~ 3325024 (-)
G1823530 NA other upstream 497978 3505577 ~ 3506272 (-)
LOC118943921 LOC106600605 other upstream 547414 3553536 ~ 3601859 (-)
LOC118943842 LOC106577176 other upstream 783432 3791031 ~ 3820702 (-)
G1823691 NA other upstream 836894 3844493 ~ 3846920 (-)

Expression


Co-expression Network