XLOC_037356 (vwc2l)


Basic Information

Item Value
gene id XLOC_037356
gene name vwc2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 40546677 ~ 40617382 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073506
TCGGATTATCTCTTCTGTTGGAGTAAGCACTATTCTTCCTCTAACTCGAATTGGAATGATTTTTGTGGTCTTATCATCACGAAGGTGCACTTGCTCGCTTGATTACGATTCCAACAAAGTGGAGCCAGACATTTCAGCGCGTGTCATATTTGCAGCATGGAGCCTTACAATTTAAGGGATCTGAGACACTCTCCTTGAATGCGTCAAGACAGCCGCGGCGAAGGATGGGCCCTTTTCTCCCGGCGATTTGCGTCGTGCTGCTCGCCCTGAACGCCGCTGTCTCGCCGGCCTCTGTCGGCCCTGAGGACTATCCCGCCGCGGACGAGGCCGAGAGAACTGCCAACAATGACATCATTTTCGATGACTACCGAGGGAAAGGCTGCGTGGATGACAGTGGCTTCGTGTACAAGCTCGGGGAACGCTTCTTCCCGGGCCACTCGAACTGCCCGTGCGTGTGCACGGAGGACGGACCGGTCTGTGACCAACCCGAGTGCCCTAAAATACACCCCAAGTGCACCAAGGTGGAACACAACGGTTGTTGCCCCGAATGCAAGGAGGTCAAAAACTTCTGTGAATACAGAGGGAAGACGTATAAAATCCTGGAGGAGTTCAAGCCTTCGCCCTGTGAATGGTGTCGCTGTGAGCCAAATAACGAGGTGCACTGTGTGGTCGCTGACTGTGCAGTACCAGAGTGCGTCAATCCAGTGTACGAGCCAGAACAGTGCTGCCCCATCTGTAAAAACGGTCCAAATTGCTTCGCTGGAACGACGATCATCCCAGCTGGCATTGAAGTGAAGGTGGACGACTGCACCATCTGTCGGTGCCACAGCGGGGACTGGTGGAAGCCTGCGCAGTGTTTGCGACGGGAGTGCTTGAACGGTCAGGCGACGTCTTAA

Function

symbol description
vwc2l Acts upstream of or within nervous system development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human VWC2L (von Willebrand factor C domain containing 2 like).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0005615 extracellular space cellular_component
GO:0030054 cell junction cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-169 Acts upstream of or within nervous system development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human VWC2L (von Willebrand factor C domain containing 2 like).

Ensembl:

ensembl_id ENSDARG00000069134

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073506 True 896 mRNA 0.54 4 40546677 40617382

Neighbor

gene id symbol gene type direction distance location
XLOC_037355 BX936447.2 coding upstream 268414 40278147 ~ 40278263 (+)
XLOC_037354 BX255912.2 coding upstream 409065 40137497 ~ 40137612 (+)
XLOC_037353 NA coding upstream 681005 39863253 ~ 39865672 (+)
XLOC_037352 cps1 coding upstream 1406955 39026311 ~ 39139722 (+)
XLOC_037351 CR812481.1 coding upstream 1532079 39010432 ~ 39014598 (+)
XLOC_037357 si:dkey-95p16.2 coding downstream 207683 40825065 ~ 40825989 (+)
XLOC_037358 hibch coding downstream 256812 40874194 ~ 40924943 (+)
XLOC_037359 BX323586.1 coding downstream 278267 40895649 ~ 40897183 (+)
XLOC_037360 mstnb coding downstream 321954 40939336 ~ 40943137 (+)
XLOC_037361 ormdl1 coding downstream 407591 41024973 ~ 41034174 (+)
XLOC_037349 CR376853.1 non-coding upstream 1759633 38786928 ~ 38787044 (+)
XLOC_037367 BX649377.1 non-coding downstream 632075 41249457 ~ 41266843 (+)
XLOC_037369 BX571827.3 non-coding downstream 892566 41509948 ~ 41598827 (+)
XLOC_037370 BX571827.2 non-coding downstream 976114 41593496 ~ 41593610 (+)
XLOC_037372 dre-mir-732 non-coding downstream 1065544 41682926 ~ 41683010 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_11493236_11526914 VWC2L coding CI01000009 null 11493236 ~ 11526914 (+)