XLOC_037358 (hibch)


Basic Information

Item Value
gene id XLOC_037358
gene name hibch
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 40874194 ~ 40924943 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073508
GAGCAGTCGCGACAGGGTGAAACCTTACTGTGCACAGTGATCCAGAACATCAAAGATATGAGCATGTCGTTAATAATTTTCACATCTGCACAGAGATTGCGATCAGTCTGTAGATTGCAGAGAATACATGGACACATGATGTCCAGTAAAGCTGGATCTGAAGTTCTGTTTGAGAAAGTGGGAAAAGCCGGAGTAATCACACTAAACAGACCCAAAGCTCTGAACGCTCTCACACTCAACATGATCAGACACATCTACCCTCAGCTCAAGaaATGGGACAAAAACTCGGAAACGGATGTAGTGATTATTAAAGGAGCAGGAGAGAAGGCTTTCTGTGCTGGTGGAGATATCAGAGCAATCGCAGAGGCTGGAAAAGCAGGCGATTCTCTTTCCCAAGTCTTTTTCCGCGAGGAATACATCCTTAACAACACTATTGGTACATATCAGAAACCCTATGTGGCTCTAATTAATGGAATTACAATGGGAGGAGGTGTGGGTCTTTCAGTTCACGGACAGTTTCGTGTGGCCACTGAGAAGACACTATTTGCCATGCCAGAGACGGGCATTGGTTTGTTCCCTGATGTCGGTGGTGGCTACTTTCTGCCTAGACTTCAAGGCAAGCTGGGCCTTTTTCTCGCCCTGACAGGTTTCCGCCTCAAAGGACGAGATGTCCAGAGGGTCGGGGTGGCTACTCACTTTGTGCAGTCAGAGAAGATTGAATCTCTAGAGAAGGATCTTGTTGACTTGAAGTCTCCATCTATCAGCGATGTGGCTCAGCTACTGGACTCTTATCAGGAACAGAGCCATCTGGATGCTGAGAAACCGTTTGTCCTCCAGGAACAGACAGAGGCCATCGACAGGCTATTTTCAGCTGGAAGTGTAGAGGAGATCGTGGAGAACCTTAAGAAAGATGGCTCGGCATTTGCACTGAAACAGGCTGAGACTCTTGTCAAAATGTCACCGACTTCACTGAAGTTAACTTTCAGGCAGATTGAGGAAGGAGCGAGAATGAGTATGCAGGAGGTGTTCATGATGGAGTATAGACTCAGCCAGGCCTGTATGAACGGCCACGATTTTTATGAGGGGGTCAGAGCAGTGCTAATCGATAAAGACCAGAGTCCAAAGTGGAAACCTTCTACCCTGGCTGGAGTCTCAGTTCAGTTTGTAGACAAATGTTTCAGCTCTCTGGGTGAAAGAGACCTCAAACTATAGAAAGTCATTTCAAAAATCCCGCAAGTTGCTTTTTCACAGATCTCTGAAATTTATCAAAGAAATCTGCATTGTTATTTCTGTCAGCATATAGTAGCTGACGAAAGCAAAAATACTTCTGCTGCTTACAGCTAAAGCAAATGTTCCTCTGAGGCTTCTGTGAGGCCTCTCTGAAATGATGAGCAATGCTGATTTCTTCTGGAAGTTCAGAGGTTTGGGGAGTGTCTTGATGCCATTCTACTGGGAAATGGCATTAAGGGAGAGTTAACAATTGAAAATGagtatgtcattatttacttaacCCCAGTTAAacgtttctgtttttatttacagttgttaATATCAGAATTTTGATAGTCATGCAGGTATTTTCTGTGAATTAAAATATGAGGTGTTCATACTGggtataaaatgacaaaagtgaTATAATGACACAATTTTGAACAAAATTTAACAGCACTCTGTTTAAAGTGCTGGGAATCGTATCTTGCATACTTCATTGTTAAAGGTGTCTTTTTTCCCCTCTAAACTGTGTAATCGTTTGTGTAAATCCTGTGGAAATAGATTGGCAGACACTGATTTTTGCACATGCTGCAATCCGTGATTAACCTTAACACATGCCCTGGCCACGATTCAGTTCGGTCGGATTAAAGTATTGTCATGTGATGCACAGTATGCAATATGACTGCCATTAACCACAGTGCTGTTTACTACACAAGTCCTTCCTCTGGCATAAATGTATCAAGCTTGATATATTAAATCTGAATGACGTTGACACGACCATGATGCCTTGAGTTATAACGATTCAGTCCTTCTTTGCTATGCCGATATAACTGCGTGGATGTTGATTTAAACTGCGTGACCTATATTtcatgaacaaaaaaaataagattgTTTTGTATCCACTTTTGGTTTTGATTGCAGAAATCTCATGTAATCTTAACATGCCCACAGCACatctcaataaaaacaaaggtgTAAAAA

Function

symbol description
hibch Predicted to enable 3-hydroxyisobutyryl-CoA hydrolase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Orthologous to human HIBCH (3-hydroxyisobutyryl-CoA hydrolase).

GO:

id name namespace
GO:0009083 branched-chain amino acid catabolic process biological_process
GO:0006574 valine catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation
ko00410 beta-Alanine metabolism

ZFIN:

id description
ZDB-GENE-050327-29 Predicted to enable 3-hydroxyisobutyryl-CoA hydrolase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Orthologous to human HIBCH (3-hydroxyisobutyryl-CoA hydrolase).

Ensembl:

ensembl_id ENSDARG00000054867

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073508 True 2193 mRNA 0.42 14 40874194 40924943

Neighbor

gene id symbol gene type direction distance location
XLOC_037357 si:dkey-95p16.2 coding upstream 48205 40825065 ~ 40825989 (+)
XLOC_037356 vwc2l coding upstream 256812 40546677 ~ 40617382 (+)
XLOC_037355 BX936447.2 coding upstream 595931 40278147 ~ 40278263 (+)
XLOC_037354 BX255912.2 coding upstream 736582 40137497 ~ 40137612 (+)
XLOC_037353 NA coding upstream 1008522 39863253 ~ 39865672 (+)
XLOC_037360 mstnb coding downstream 14393 40939336 ~ 40943137 (+)
XLOC_037361 ormdl1 coding downstream 100030 41024973 ~ 41034174 (+)
XLOC_037362 osgepl1 coding downstream 115351 41040294 ~ 41045873 (+)
XLOC_037363 zgc:136439 coding downstream 155086 41080029 ~ 41083181 (+)
XLOC_037364 slc40a1 coding downstream 178184 41103127 ~ 41113878 (+)
XLOC_037351 CR812481.1 non-coding upstream 1859596 39010432 ~ 39014598 (+)
XLOC_037349 CR376853.1 non-coding upstream 2087150 38786928 ~ 38787044 (+)
XLOC_037367 BX649377.1 non-coding downstream 324514 41249457 ~ 41266843 (+)
XLOC_037369 BX571827.3 non-coding downstream 585005 41509948 ~ 41598827 (+)
XLOC_037370 BX571827.2 non-coding downstream 668553 41593496 ~ 41593610 (+)
XLOC_037372 dre-mir-732 non-coding downstream 757983 41682926 ~ 41683010 (+)
XLOC_037374 dre-mir-26a-1 non-coding downstream 808590 41733533 ~ 41733610 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_11669960_11702667 HIBCH coding CI01000009 null 11669960 ~ 11703539 (+)