XLOC_003736


Basic Information

Item Value
gene id XLOC_003736
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44384924 ~ 44391541 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008433
CCTGCATGATAGTCAGGAACTCTGACCGCTCTGCTATAACACTTGTAGGTTCAAAGGTACAAAGTGggttttaatacctcaatttgctcaattGTTCTTTGCTGAAACTGTTCCAGAGCAATGTATAACAattaccactaggtgtcactgtagagtttTGAAACGTTTCAAagctttgacacatttgcttcaactgtttcagtttcatgaagcctcactttgcccaccactactgtTAAATGAAGCGAGGAGAGCAAGCTGAAGCAGGATTTCTACATCTGAAACACACATCATACAGTGTTTGCTCAGCGGTTCACCTGTCCGTGTGTTCTCTCCTGCTCCTCTCGGCCGGTCAGCATCACCAGGTAAGCAGAAAGGGTTCCTCCACTATTGTAGATCTGCTTGATGGTGTCTGAGACAGATTAAACACAGAGCTGTGGTGTATTCACCATCATTTCTCTAACACTCAGCCAACAAACAGGCCGAGAGTTACAGCTGATCACTCGCTTCACTGATCTGATCTGTAGATGAGCTGATGGAGAGAATGTGGGGATTTTATTCTTGTGCTTGTCTTCTTGCTCAGCTGTGGTATTGCACTAGACAGATGCTGCTTTATCTTTAACATGTTCTCAGACAAATATAAGAGTTACAGTATAAACACAAGCCTCCACAAACCAATAACCTCATTAAAGACTAATCAACAAAACTCCACATCATTTGCACAGACAATCATTTACACAAGATCATCAGAAACTGGTCTTAT
>TCONS_00008704
CTCGGCCGGTCAGCATCACCAGGTCTTTCCGCATCCATGTGGGAGATTCGCAATCAGTCTGAAGATCCACACCGGAGCAACCTGAAGATGCAGAACACAGAAGTCCAGTATGGTGGAGCGATAAAGGATATCAACATGATCTACAACACAGGGAGCcaatatgacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcccattGCAATAATATAGGATATTATACTTGCTTACCTGTCCTTCTTCTTTCTCTTTGTGTGTCTTTTTACAGGTACATGCATTCAATATGGTGTCAGAGaatgaacacacaacacacacatgcgGGTAAACTACATGTGTGAACCAGAGCTTAACATCCGGAACAGAACCAGGAGATAAAGTTACTGTAcattcacattctctctctctccctcacacacacacacacacacacacacatgcagctaTTCACCATGCACAAGTTAATGCAGGATCAATAAAAATTAACACTGAACCATAAAACAAGAAGATCTTTAGTTCCGCTGGGTCAGTGACAGGTGAGCGTTCCACTGGGTTATTTACAGTTGAGTTAGAGTTGGGTTAGGGTTTTTGACAGGTGCTCATTTCTCTAGGTTATCGACTGGTGAGTTCCTCTGGGTTATCGACAGCTGCTTGTTGTTCTGGGTTATCGTCAGGTGCGCATTTCTCTTGTTTTTTGACAGGTGAGCATACCTTTGGGCTATTGACAGGTGAGTGTCTTACTgggttttatctgtttttatcaaCAGGTAAGTGTTTCACTTGGTTAATGACAAGTATTCATTTCACTGGGTCACTGACAGGCGAGTGTTCCACTGGGTAGTCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGGGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCTCTGGGTAATCGTCAGGGGAGTGTTCCGCTGGGTAGTCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCACTGGGTAGTCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGGGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008433 False 763 lncRNA 0.42 2 44384924 44386217
TCONS_00008704 True 1152 lncRNA 0.48 2 44385798 44391541

Neighbor

gene id symbol gene type direction distance location
XLOC_003735 NA coding upstream 9742 44369127 ~ 44375182 (+)
XLOC_003734 srsf7b coding upstream 21892 44356504 ~ 44363032 (+)
XLOC_003733 CABZ01100187.1 coding upstream 49144 44335666 ~ 44335780 (+)
XLOC_003732 CABZ01100185.1 coding upstream 49602 44324761 ~ 44335322 (+)
XLOC_003731 NA coding upstream 66790 44317203 ~ 44318134 (+)
XLOC_003737 NA coding downstream 2794 44394335 ~ 44399370 (+)
XLOC_003738 NA coding downstream 56147 44447688 ~ 44450363 (+)
XLOC_003739 ero1b coding downstream 110869 44502410 ~ 44524932 (+)
XLOC_003740 NA coding downstream 147963 44539504 ~ 44542998 (+)
XLOC_003741 nid1b coding downstream 156668 44548209 ~ 44603789 (+)
XLOC_003369 CR854846.2 misc upstream 28261842 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31672928 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31690661 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31699325 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31704896 12679732 ~ 12680028 (+)
XLOC_003730 NA non-coding upstream 70514 44311334 ~ 44314410 (+)
XLOC_003743 NA non-coding downstream 284965 44676506 ~ 44752657 (+)
XLOC_003745 NA non-coding downstream 400962 44792503 ~ 44803305 (+)

Expression


Co-expression Network