LOC118943857 (LOC106563104)


Basic Information

Item Value
gene id LOC118943857
gene name LOC106563104
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3281355 ~ 3325024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960125.1
atggagagagggacggagagagggacggagagagggacggagagagggacggagagggagacggagagggagacggagagaaggaCGGAGAAGGAGACGAGGGAGCAGGAAGGGATAAGGGATGGAGCCCCGGACAACGGGGCCCTAGATTCAGGGTCCCCTACACGGCAAGGAACCTCGGGACCCCCAGGGGCCTCGTCTCCCTCCTCCCACAAGATGGGCTTCTCCTACAACCGTGATGCTGACCTCATCAAGAAGAAGAGGGCCAGCCTCCGTCACTCTGAGTCTGAGACCGCCTCCGACTGCAGCAACCCCACCCCTGACAACCACGCTGACACGCCCACTAAACAGgagccAACGCCCGTCCCCAGATCCCCAGTGGAAaagAAGGTGCAGTCTCGGCAGGAGGAGCTGAAGGAAAGAGCCAGGCTTCTCCTGGAGCAGGCCCGGCGGGATGCTGCCATGAAGGCCGGCAGCAAGCACACAGCCAGTTCAACTAACTCAGCCCCAGTTAAAACACCACAAGTCACTgacgagagagACGTGGAGCGCCGGAGGCAGCTGAGGGAGAGGGCCAGACAGCTCATCGCCGAGGCTCGCTCTGGGGTCAAGATCACAGAGATGCCCCTTTACGACACGACCGCTGACCGAGGGAGAGGCAAAACCACCCCTACtggaggttagacacacacacacacacacacacacacacatgtttaaaGCCAGCCGCTAACACACTTGCATAGACACGTGTCCAGCTGGTTGACATTTCAAACAAATGAAGAACACGGTTTTTAAGTCAATCTGTTTTTCCTTTTAAATTGTCTTTCTACATCAGTGTGTTTTAAACATCCCAGGAtgctgtgtttctctggaggACATCTGTGCTGCATTTAACCACAAGGAAATTACACATGAATGttgccacccacacacacacacaaatacacacacacacacacacacacacacacacacacacacacaagtaaatTGTAAGCTGAAAGCACTCACTGGTGGAGACATTTCCATTAGTCCTTCTCTCTAAGGGCTATCGCTAATCCCCCAAAATGCATCAGGAAAAAACAAACGCCATTTGATCACTACTGTAGGTCTccaaacacactcacacgcagCCCTGTGATTACAGCTCAGATTGGTTTCgctttcctctcctttattcagCTGTAATTATTGGTTAATCAACGGTGCTCTTGGTGTGGCTGAGTTACCTTTCAGGAGAGAAACAAAAAACTCATTTATAATCATAGCTATCGAGTCTGAAATTCAACGCTGTGTGAATTCCCCGTCCTGCGGTTTTCCATTCCATCGTAAGTAGACGTTGTTACGGTAACGACCATTATTACGCCTGTAGATATTTGTTTTCAATCGTCTCCCCGTTTATGACTCCTCTTGTCTGGTCGTCGGGGTGAAATGTAATGGCTGCGGTGCACAGGAGGGGAACAGACGACCCACGTGACTGGGCAGCATAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCATAGGGAAGGAACAGACAGCGACCCACGTGACTGGACAGCATAAGGAAGGAACAGACGACGACCCACGTGACTGGGCAGCACAGGAGGGGAACAGACGACCCACGTGACTGGGCAGCACAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCATAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCATAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCACAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCACAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCACAGGAGGGGAACAGACGACGACCCACGTGACTGGGCAGCATAGGGAAGGAACAGACAGCGACCCACGTGACTGGACAGCATAAGGAAGGAACAGACGACGACCCACGTGACTGGGCAGCACAGGAGGGGAACAGACGACCCACGTGACTGGGCAGCTTAAGGAAGGAACGACGACCCACGTGACTGGGCAGCACAGGAAGGGAACAGACGACCCACATGACTGGGCAGCATAGTGAAGGAACAGACAGCGACCCACGTGACTGGGCAGCATAGGGAAGGAACAGACGACGACCCACGTGACTGGGCAGCATAGGGACGGAACAGACAGCGACCCACGTGACTGGACAGCATAGGAGGGGAACAGTCGACGACCCACGTGACTGGGCAGCAtaggggaggaacagacaacgaCCCACATGACTGGGCAGCATAGGGAACAGACGACGACCCACGTGACTGGGCAACATAGGGAAGGAGAAGACGACGACCCACGTGACTGGGCAGCATAGGGAAGGAACAGACAGCGACCCACGTGACTGGGCAGCATAGGGAAGGAACAGACAGCGACCCACGTGACTTGGCAGCATACGGAAGGAACAG
>TU2087372
GTGATGCTGACCTCATCAAGAAGAAGAGGGCCAGCCTCCGTCACTCTGAGTCTGAGACCGCCTCCGACTGCAGCAACCCCACCCCTGACAACCACGCTGACACGCCCACTAAACAGgagccAACGCCCGTCCCCAGATCCCCAGTGGAAaagAAGGTGCAGTCTCGGCAGGAGGAGCTGAAGGAAAGAGCCAGGCTTCTCCTGGAGCAGGCCCGGCGGGATGCTGCCATGAAGGCCGGCAGCAAGCACACAGCCAGTTCAACTAACTCAGCCCCAGTTAAAACACCACAAGTCACTgacgagagagACGTGGAGCGCCGGAGGCAGCTGAGGGAGAGGGCCAGACAGCTCATCGCCGAGGCTCGCTCTGGGGTCAAGATCACAGAGATGCCCCTTTACGACACGACCGCTGACCGAGGGAGAGGCAAAACCACC

Function

NR:

description
EH domain-binding protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960125.1 False 2447 mRNA 0.55 4 3281355 3325024
TU2087372 True 434 TUCP 0.61 4 3283133 3324789

Neighbor

gene id symbol gene type direction distance location
trnav-uac-97 NA coding downstream 41395 3239888 ~ 3239960 (-)
trnav-uac-96 NA coding downstream 42473 3238810 ~ 3238882 (-)
trnav-uac-95 NA coding downstream 46542 3234741 ~ 3234813 (-)
trnav-uac-94 NA coding downstream 47404 3233879 ~ 3233951 (-)
trnav-uac-93 NA coding downstream 47618 3233665 ~ 3233737 (-)
LOC110514665 LOC106577322 coding upstream 16 3325040 ~ 3520011 (-)
LOC118943858 NA coding upstream 99423 3424368 ~ 3425279 (-)
LOC118943909 NA coding upstream 214591 3539615 ~ 3541320 (-)
LOC118943921 LOC106600605 coding upstream 230959 3553536 ~ 3601859 (-)
LOC118936584 LOC106577178 coding upstream 360583 3685607 ~ 3693195 (-)
G1823451 NA non-coding downstream 11793 3258971 ~ 3269562 (-)
G1823453 NA non-coding downstream 15389 3256745 ~ 3265966 (-)
G1823450 NA non-coding downstream 27911 3253133 ~ 3253444 (-)
G1823449 NA non-coding downstream 30251 3248721 ~ 3251104 (-)
G1823445 NA non-coding downstream 53029 3227872 ~ 3228326 (-)
G1823478 NA non-coding upstream 16649 3341673 ~ 3344235 (-)
G1823485 NA non-coding upstream 37659 3362683 ~ 3363028 (-)
G1823488 NA non-coding upstream 43513 3368537 ~ 3369334 (-)
G1823501 NA non-coding upstream 78183 3403207 ~ 3403568 (-)
LOC118943899 LOC106592999 other downstream 764432 2513318 ~ 2528846 (-)
G1823141 NA other downstream 774912 2505567 ~ 2506443 (-)
G1822333 NA other downstream 1031138 2200585 ~ 2250217 (-)
G1822308 LOC106577261 other downstream 1148844 2131312 ~ 2132511 (-)
G1822081 NA other downstream 1390207 1888208 ~ 1891148 (-)
G1823530 NA other upstream 180553 3505577 ~ 3506272 (-)
LOC118943842 LOC106577176 other upstream 466007 3791031 ~ 3820702 (-)
G1823691 NA other upstream 519469 3844493 ~ 3846920 (-)
G1823705 NA other upstream 578697 3903721 ~ 3906049 (-)

Expression


Co-expression Network