XLOC_037361 (ormdl1)


Basic Information

Item Value
gene id XLOC_037361
gene name ormdl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41024973 ~ 41034174 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073512
TTGTAACCCCGTTAGCAGTGGTAGCCTGGTCTGCTAGCGGTGTGTGTGCGGTGAGTCAGCCCGCAGTGCGCGCAGCGGAGGCCGGCAGCGCTCCAGCCTGCTTCACCCGGACGCAAAACAAGAAAAGCAAGATGAATGTCGGCGTGGCCCACAGCGAAGTGAACCCAAATACCCGTGTGATGAACAGTCGAGGGATATGGCTGACATACGCGCTCGGCGTCGGAATGCTTCACATTGTACTGTTGAGCATTCCTTTCTTCAGTGTTCCTGTTGTGTGGACCCTCACAAACGTTATTCACAATTTTGGTATGTATGTGTTTATGCATGCAGTGAAAGGCACACCATTTGAAACTCCAGACCAGGGCAAGGCAAGACTTCTCACACACTGGGAACAGCTGGACTACGGCGTGCAGTTCACATCATCTAGAAAATTCTTTACAATCTCACCAATCATTTTATATTTTCTTGCCAGCTTTTACACAAAATATGACACAGCTCATTTTGTGATAAACACAGCTTCGCTTTTGAGCGTTCTCATCCCCAAATTGCCACAGCTCCACGGAGTGCGGATCTTTGGAATAAACAAGTATTAATCCCAATGTTCAGAGGGCACAGACCAGTTGGGAGCTGCTGCCTGATATGGGAATGTTGTTGATAACCCTTTGTACTTTGTACCGCAGTTGTGTACACTTAGCAGTTTTGTACAGTCCGTGTAATTTGTGAGTCTCTTTGTTTGATATATCTTGAGAAATTGTTGTAGGGATACGTTAGGAGGACAATTCCGCAAGCATTAATAACTTAagatatttaatgtgtttttgttagTTGTTTTGTGATCCTCGTGGATCTGGGCTGGCCCAGGTTTCATGGTTGAAGTTATTTTTTTCGttaattagtttttgtttgttcaaaTGTGTTCACAACACTGATACACTGAAATTGATTAATGCTTTTAGCGTCACTTCACATTTCTGAATATGTTCTTAAATAATGCCATGAgttgaaaaaaatgtgtttttaaaatcatttacaaGCCATGAAACCTTTCTGCTGTTTCTTGAGTTTTGTTGGATGTTTTCATTGCTTCAGAGATgacaaataataaactaaatttgcatgATTTCCTGAAAACTATTTGTTCACAATATTGTGTATAGTTTTGTTTGGTTAATGTCTTACAGCTTCTAAGTGACAGTGAAAATTTAATAAGATTAACAGATTTAAAGTGCATTAAGTTGaagtgaaattaaaaatacatcttaTTTCTCTGGTCTCTTTTTGAACTGTTTATCAGTGCGCATTATTTCCAAAATTTTCTTTTTGAAAAGTTTCCttttaccttaaaacaaaacTTCAAGTTCTTCCCAAAGTTGTTGTATTTTCAGTTCTAATCAGAATGAGTCGATTACACAAAGTGTCACTATGTGATCAGAAAACTCCAGATCAGAACCAAGCTTCAGCAAACTATCATATTTCTTTACTCTTTTCTGTCACAGTATTATTGAAGTTGACAAACTGTAACATAGACCTGTTAACAGTTCGCATCCTTCCATCATCTTGTCTTTTGACGATATCTGCAAAGCCTCAACTGTGCCAATTGTTTTGCCCTTTTGTTTTGAGAAAAGGTATGAACATAGTATGTTATCTGTTGTATGACATGCTGCAAGCAAATAAACCTTTGCAAAGTATTAGCAA
>TCONS_00073513
GAGTCAGCCCGCAGTGCGCGCAGCGGAGGCCGGCAGCGCTCCAGCCTGCTTCACCCGGACGCAAAACAAGAAAAGCAAGATGAATGTCGGCGTGGCCCACAGCGAAGTGAACCCAAATACCCGTGTGATGAACAGTCGAGGGATATGGCTGACATACGCGCTCGGCGTCGGAATGCTTCACATTGTACTGTTGAGCATTCCTTTCTTCAGTGTTCCTGTTGTGTGGACCCTCACAAACGTTATTCACAATTTTGGTATGTATGTGTTTATGCATGCAGTGAAAGGCACACCATTTGAAACTCCAGACCAGGGCAAGGCAAGACTTCTCACACACTGGGAACAGCTGGACTACGGCGTGCAGTTCACATCATCTAGAAAATTCTTTACAATCTCACCAATCATTTTGTAAGTTgatgctgtgtacatttttgcacAGTATCTTACACTAAATACAGGAAATACTGcttttcacataaaaaaaaaatgttaaagg

Function

symbol description
ormdl1 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:1900060 negative regulation of ceramide biosynthetic process biological_process
GO:0090155 negative regulation of sphingolipid biosynthetic process biological_process
GO:0090156 cellular sphingolipid homeostasis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0035339 SPOTS complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-529 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

Ensembl:

ensembl_id ENSDARG00000014333

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073512 False 1695 mRNA 0.39 4 41024973 41034174
TCONS_00073513 True 493 mRNA 0.47 3 41025025 41030600

Neighbor

gene id symbol gene type direction distance location
XLOC_037360 mstnb coding upstream 81836 40939336 ~ 40943137 (+)
XLOC_037358 hibch coding upstream 100030 40874194 ~ 40924943 (+)
XLOC_037359 BX323586.1 coding upstream 127790 40895649 ~ 40897183 (+)
XLOC_037357 si:dkey-95p16.2 coding upstream 198984 40825065 ~ 40825989 (+)
XLOC_037356 vwc2l coding upstream 407591 40546677 ~ 40617382 (+)
XLOC_037362 osgepl1 coding downstream 6120 41040294 ~ 41045873 (+)
XLOC_037363 zgc:136439 coding downstream 45855 41080029 ~ 41083181 (+)
XLOC_037364 slc40a1 coding downstream 68953 41103127 ~ 41113878 (+)
XLOC_037365 stat4 coding downstream 122113 41156287 ~ 41208343 (+)
XLOC_037366 stat1b coding downstream 184793 41218967 ~ 41247197 (+)
XLOC_037355 BX936447.2 non-coding upstream 746710 40278147 ~ 40278263 (+)
XLOC_037354 BX255912.2 non-coding upstream 887361 40137497 ~ 40137612 (+)
XLOC_037353 NA non-coding upstream 1159301 39863253 ~ 39865672 (+)
XLOC_037351 CR812481.1 non-coding upstream 2010375 39010432 ~ 39014598 (+)
XLOC_037367 BX649377.1 non-coding downstream 215283 41249457 ~ 41266843 (+)
XLOC_037369 BX571827.3 non-coding downstream 475774 41509948 ~ 41598827 (+)
XLOC_037370 BX571827.2 non-coding downstream 559322 41593496 ~ 41593610 (+)
XLOC_037372 dre-mir-732 non-coding downstream 648752 41682926 ~ 41683010 (+)
XLOC_037374 dre-mir-26a-1 non-coding downstream 699359 41733533 ~ 41733610 (+)

Expression


Co-expression Network