LOC118936586 (pex13)


Basic Information

Item Value
gene id LOC118936586
gene name pex13
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3821289 ~ 3830217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959994.1
GCCATGGAGCTAGATATGTAGCAATTTGCTAGTTACTACGTGGGGAAGTGAAGGGAAAACGGTTAAAAACGGTGTAACTTCAGACAATTTGTACGATGGCATCGCAGCCTCCTCCTAAACCGTGGGAAAGGCGGATTCCAGGAGCAGCCATGAGTGCACCAGTTAACTATCGGTCGACTGACTTTGCCCCACCAGGTCCCTCCACCCCGGGCCTCTCTGGTCCCGCCGGTCCTCCCGTCTTGACCCGCATGGTGCCCCCCGTCCCCCCTCgccctgtccagtccatccagtCCTACCGTCCCTCCTACAGCTCCTTCCCTGGCTCCTCCTACAACCCCTATGGTAGCTCCAGCCTCTACGGTGGAGcatacagcccctacagtccctaCAGTGGTGGCTATGGCATGGGAGGGGGGCTCGGTGGGAGCCTGGGCTACAGCCGCTTCGGCCAAACCGGTGGTGAAGACGTGGCGCCCAGTCGGTTTGTCCAACAGGCAGAGGAGAGCAGCCGCGGCGCCTTCCAGTCCATCGAGAGCATCGTCCAGGCCTTCACCTCGGTCAGCATGATGATGGACGCCACCTTCTCGGCCGTCTACAACAGCTTCCGAGCCGTGCTGGATGTAGCCAACCACCTGACACGGTTACGGATGCACTTTACCAAGGTTCTGTCGGCCTTTGCCCTGGTGCGCACCCTGCGCTACCTGTACCGCCGCATACAGAGGATGCTGGGGCTGAGGCGGGACGGTGAGGTGGAGGACCTGTGGGCAGACAGTGAAGGGGCTGTTCTGGCGACCAGAGGTGCTGGAGCCGCAATGGAAGACCCCAGAGCCGGAGCGGTCAAGTCGTGGCCCATCTTCCTTTTTCTGGCCGTGGTCCTAGGAGGGCCCTATCTCATCTGGAAGCTGCTGAGCTCTGCCCAGGGGCCCGAGGAGAGCGCCACCAACTGGGCTAGTGGGGAGGATGACCATGTGGTTGCCAGGGCGGAGTATGACTTCACAGCTGTGTCGGAGGAGGAGCTCTCACTGAATGCTGGAGACATGCTCAACCTGGCTCCTAAAGAGCATCAACCCAGGGTGCGTGGGTGGCTGCTGGGCAGTGTAGACGGCCAGACCACAGGCCTCATACCTGCCAACTACGTCAAGGtcctggggaagaggagaggcaggaagcaCGCTGAGCTGGAGAGGCTGGCCCAGGTTCAGGCCCAGCCAGGGAACCCACTGGGCACCACCCTTCAAGCCCCACAGCCTAACCTGGCTACGGGCCCAGTGCCAACTGTATCCCCAGGCTTGGTTTCAGGCCTCGGCCCATTAGAAGCCGTCCCAGTAACTATCCCAGAGGAGCTGCTGGAGAGCGTGTACAGGGAAACGCCAGCCGGTTACAGCAGCCTGGGTCTGGGTGTATTGCCCAGCACCACGACAGCTTCGAGCACAGTGCTCACCATACCAGAGAAGATTGACCTGTGATGTCTGACTTTGTGTTTTCCCACACGTCCGTTGAGGCTGTACGTGGTTTGTTGATGAGCTGTTCTGTAGAGCTCGGTCACGTCCAGCAGTGGGGAAACACATGATTTACATCCAGAAGGTGATTCATGTTCACAATTCAGGGGCTTTGGTTTGACATTTAATCTGCCTGGAATCAATTAGTGAGGTTGGTACATGAGGTATTGAGTACCTGGATAAAAGAGAAGTGGGTATCTGTCAGACATCTGGATATGAGTGTTTCCAGAACATTATCTAGATATGAGTGTTTCCAGGACACTGTCTTGGTTTGGCTGTCTTGTCAGTGGTTATCTAGACCAACCTATACCTATCCTGTACCAGCCTTGTCAGTACGGTTACACTACATTTTAGCTCAATAATGATgcatatttaaatgtttttgatATAGATTTATTTAATTAACAGTGAATGAGTACATTAAGATCAAATGAAGCACGCTAAGAGATTGTGAAAATATTGCATCGTTTGATGCTGACGGGACAAAGCCATAATATTATGTTTAACCTTTTTGTTCCAAGTTAATGTCGATGGTTTGATATTTAAAGATAAATTCATAGGAATAGAAGCTCTAACCCTGGCAAGTTGACTGGTACACTCACAATGGCTGCCTGATTGTGACTCAATCGTTTCCATGGTATTTTGGAATGTTCTATCAACTGCTGGGTTGCCACGGTAATGTGAAACATTTATTCAAATGAtgctaactgatgtggctcatacAATGGCATGTGTTGAGTTGACATCACAGCCCCAATTGAATGGTACACTTCCTACTTGTACTTCCTGGCATGGGTCTAGGTTGAAGATGGGAATATTTTAAAACCTAGACATGGGTACACTCGATGTCTACCAGTCCACGTATTATGTCATCATTGACTTGGAGACTATTTCTATGGATAAATTACTATCAAGGTTCAGATTTGGTTCTAATGGAAGGATGGGACTTGGTTTTTAAATCGGTGTTAATATGGTTGTAAAATGTTGTTTGAAATTCGGGAATGGTCCAACTATATCTTGAATGTTCTGTAAAATGTCCTAAATAATTCAAAGTGAAGTTTTGAACTTGGAAAATTGAACTATCCAATATCAAGATATATTAACTCAAGAAGTTTTGTTGAATGCATCTGTAAGATCTGAAATAGCCAGTCCTCATCTTGGTGTTTCAGTGGCATTTTAAGTCCTCACTCACCTGAAAAACTGTAATTATGTAAATACAATTATTTTGGAAATAAACATTTTCAAAACCTGAAAA
>XM_036959995.1
TTGATACTTTAGTTTTATCTCCATCAGCCTCGGGACGACTTGGAACGGAATAATGCAATGGAGACGAAGCCTTCTAGGCTCTACTAATCAACGCCGAAAAGATACAACAAAGTTGCTGACTTCAGAGACGTTAAACTTGCCCAGTCGACTGACTTTGCCCCACCAGGTCCCTCCACCCCGGGCCTCTCTGGTCCCGCCGGTCCTCCCGTCTTGACCCGCATGGTGCCCCCCGTCCCCCCTCgccctgtccagtccatccagtCCTACCGTCCCTCCTACAGCTCCTTCCCTGGCTCCTCCTACAACCCCTATGGTAGCTCCAGCCTCTACGGTGGAGcatacagcccctacagtccctaCAGTGGTGGCTATGGCATGGGAGGGGGGCTCGGTGGGAGCCTGGGCTACAGCCGCTTCGGCCAAACCGGTGGTGAAGACGTGGCGCCCAGTCGGTTTGTCCAACAGGCAGAGGAGAGCAGCCGCGGCGCCTTCCAGTCCATCGAGAGCATCGTCCAGGCCTTCACCTCGGTCAGCATGATGATGGACGCCACCTTCTCGGCCGTCTACAACAGCTTCCGAGCCGTGCTGGATGTAGCCAACCACCTGACACGGTTACGGATGCACTTTACCAAGGTTCTGTCGGCCTTTGCCCTGGTGCGCACCCTGCGCTACCTGTACCGCCGCATACAGAGGATGCTGGGGCTGAGGCGGGACGGTGAGGTGGAGGACCTGTGGGCAGACAGTGAAGGGGCTGTTCTGGCGACCAGAGGTGCTGGAGCCGCAATGGAAGACCCCAGAGCCGGAGCGGTCAAGTCGTGGCCCATCTTCCTTTTTCTGGCCGTGGTCCTAGGAGGGCCCTATCTCATCTGGAAGCTGCTGAGCTCTGCCCAGGGGCCCGAGGAGAGCGCCACCAACTGGGCTAGTGGGGAGGATGACCATGTGGTTGCCAGGGCGGAGTATGACTTCACAGCTGTGTCGGAGGAGGAGCTCTCACTGAATGCTGGAGACATGCTCAACCTGGCTCCTAAAGAGCATCAACCCAGGGTGCGTGGGTGGCTGCTGGGCAGTGTAGACGGCCAGACCACAGGCCTCATACCTGCCAACTACGTCAAGGtcctggggaagaggagaggcaggaagcaCGCTGAGCTGGAGAGGCTGGCCCAGGTTCAGGCCCAGCCAGGGAACCCACTGGGCACCACCCTTCAAGCCCCACAGCCTAACCTGGCTACGGGCCCAGTGCCAACTGTATCCCCAGGCTTGGTTTCAGGCCTCGGCCCATTAGAAGCCGTCCCAGTAACTATCCCAGAGGAGCTGCTGGAGAGCGTGTACAGGGAAACGCCAGCCGGTTACAGCAGCCTGGGTCTGGGTGTATTGCCCAGCACCACGACAGCTTCGAGCACAGTGCTCACCATACCAGAGAAGATTGACCTGTGATGTCTGACTTTGTGTTTTCCCACACGTCCGTTGAGGCTGTACGTGGTTTGTTGATGAGCTGTTCTGTAGAGCTCGGTCACGTCCAGCAGTGGGGAAACACATGATTTACATCCAGAAGGTGATTCATGTTCACAATTCAGGGGCTTTGGTTTGACATTTAATCTGCCTGGAATCAATTAGTGAGGTTGGTACATGAGGTATTGAGTACCTGGATAAAAGAGAAGTGGGTATCTGTCAGACATCTGGATATGAGTGTTTCCAGAACATTATCTAGATATGAGTGTTTCCAGGACACTGTCTTGGTTTGGCTGTCTTGTCAGTGGTTATCTAGACCAACCTATACCTATCCTGTACCAGCCTTGTCAGTACGGTTACACTACATTTTAGCTCAATAATGATgcatatttaaatgtttttgatATAGATTTATTTAATTAACAGTGAATGAGTACATTAAGATCAAATGAAGCACGCTAAGAGATTGTGAAAATATTGCATCGTTTGATGCTGACGGGACAAAGCCATAATATTATGTTTAACCTTTTTGTTCCAAGTTAATGTCGATGGTTTGATATTTAAAGATAAATTCATAGGAATAGAAGCTCTAACCCTGGCAAGTTGACTGGTACACTCACAATGGCTGCCTGATTGTGACTCAATCGTTTCCATGGTATTTTGGAATGTTCTATCAACTGCTGGGTTGCCACGGTAATGTGAAACATTTATTCAAATGAtgctaactgatgtggctcatacAATGGCATGTGTTGAGTTGACATCACAGCCCCAATTGAATGGTACACTTCCTACTTGTACTTCCTGGCATGGGTCTAGGTTGAAGATGGGAATATTTTAAAACCTAGACATGGGTACACTCGATGTCTACCAGTCCACGTATTATGTCATCATTGACTTGGAGACTATTTCTATGGATAAATTACTATCAAGGTTCAGATTTGGTTCTAATGGAAGGATGGGACTTGGTTTTTAAATCGGTGTTAATATGGTTGTAAAATGTTGTTTGAAATTCGGGAATGGTCCAACTATATCTTGAATGTTCTGTAAAATGTCCTAAATAATTCAAAGTGAAGTTTTGAACTTGGAAAATTGAACTATCCAATATCAAGATATATTAACTCAAGAAGTTTTGTTGAATGCATCTGTAAGATCTGAAATAGCCAGTCCTCATCTTGGTGTTTCAGTGGCATTTTAAGTCCTCACTCACCTGAAAAACTGTAATTATGTAAATACAATTATTTTGGAAATAAACATTTTCAAAACCTGAAAA

Function

symbol description
pex13 Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be part of peroxisomal importomer complex. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 11A. Orthologous to human PEX13 (peroxisomal biogenesis factor 13).

NR:

description
peroxisomal membrane protein PEX13-like

GO:

id name namespace
GO:0016560 protein import into peroxisome matrix, docking biological_process
GO:0005777 peroxisome cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13344 PEX13; peroxin-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959994.1 False 2754 mRNA 0.50 4 3821289 3829937
XM_036959995.1 True 2725 mRNA 0.50 4 3821289 3830217

Neighbor

gene id symbol gene type direction distance location
LOC118943842 LOC106577176 coding downstream 587 3791031 ~ 3820702 (-)
LOC118936584 LOC106577178 coding downstream 128094 3685607 ~ 3693195 (-)
LOC118943921 LOC106600605 coding downstream 219430 3553536 ~ 3601859 (-)
LOC118943909 NA coding downstream 279969 3539615 ~ 3541320 (-)
LOC110514665 LOC106577322 coding downstream 301278 3325040 ~ 3520011 (-)
rel LOC106577316 coding upstream 37839 3868056 ~ 3895511 (-)
LOC110531464 alb1 coding upstream 70685 3900902 ~ 3914858 (-)
LOC110532916 LOC106577328 coding upstream 95104 3925321 ~ 3937927 (-)
LOC110510589 papolg coding upstream 120573 3950790 ~ 3974808 (-)
LOC118943849 NA coding upstream 169718 3999935 ~ 4001461 (-)
G1823672 NA non-coding downstream 32200 3788759 ~ 3789089 (-)
G1823647 NA non-coding downstream 43354 3775885 ~ 3777935 (-)
G1823635 NA non-coding downstream 83196 3737485 ~ 3738093 (-)
G1823624 NA non-coding downstream 100104 3720031 ~ 3721185 (-)
G1823683 NA non-coding upstream 1683 3831900 ~ 3832557 (-)
G1823694 NA non-coding upstream 29356 3859573 ~ 3859821 (-)
G1823699 NA non-coding upstream 43258 3873475 ~ 3873978 (-)
G1823642 NA non-coding upstream 47989 3878206 ~ 3881717 (-)
G1823717 NA non-coding upstream 118221 3948438 ~ 3948665 (-)
G1823530 NA other downstream 315017 3505577 ~ 3506272 (-)
LOC118943857 LOC106563104 other downstream 496500 3281355 ~ 3325024 (-)
LOC118943899 LOC106592999 other downstream 1304366 2513318 ~ 2528846 (-)
G1823691 NA other upstream 14276 3844493 ~ 3846920 (-)
G1823705 NA other upstream 73504 3903721 ~ 3906049 (-)
G1823710 NA other upstream 103676 3933893 ~ 3936043 (-)
G1824125 NA other upstream 831374 4661591 ~ 4662234 (-)
G1824416 NA other upstream 975247 4805464 ~ 4820448 (-)

Expression


Co-expression Network