XLOC_037363 (zgc:136439)


Basic Information

Item Value
gene id XLOC_037363
gene name zgc:136439
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41080029 ~ 41083181 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073515
CTAATGCGCATGCCCGAGTCTGAGCCTGCTGCTAGACACAGAAAAAAGCAGCACCCTTTGCCCAGTGCTCAGACTGACAATGAAAGCTGTTATTCTGGCAGCAGGTTATGGCACGAGACTGCAGCGGGATATTGAGATCGACACGACGGGGAAATTCAAGCATTTGAAAGGCATTGCCAAACCTCTGCTTCCCGTCGGTTCATGTGCACTGATCTCACACTGGCTTCAGGCACTGACCAAAACAGGATGTGTGGACACTGTTTATGTGGTTACAAATGATCTTCACCATGAAGCGTTCCAGCAGTGGGCTCAAGAATTTcccaatgttaaaataataaacgaTGGTACAAGAAGAAATAAGGACAGACATGGTGCCGTTGCCTGTCTCCAGTTGACAATCAAGTTGTGTGCTGTGGATGACGACTTACTAGTTATCGGAGGAGATACTTTATTCAAGGAGGACTTCAGCCTCAGGACATTTACAGAGAGATTCTTTGAAGTCCAATCTAAAGACAAAGAGAGCAATTTAGTGCTGGCATACCGATGCAAAGATGAGGAAACATCCAAATACGGGATTCTAGAGTTGGACGAGGACCTTAA
>TCONS_00073516
CCGAGTCTGAGCCTGCTGCTAGACACAGAAAAAAGCAGCACCCTTTGCCCAGTGCTCAGAGTACGGTCCTTACAAAAGTGTGCTCCTTTCCGATTTCCgcaaacttatttaaaatcacaAGCTGATCAAAGCTGTTGTAAATTCATTTTCAGCTGACAATGAAAGCTGTTATTCTGGCAGCAGGTTATGGCACGAGACTGCAGCGGGATATTGAGATCGACACGACGGGGAAATTCAAGCATTTGAAAGGCATTGCCAAACCTCTGCTTCCCGTCGGTTCATGTGCACTGATCTCACACTGGCTTCAGGCACTGACCAAAACAGGATGTGTGGACACTGTTTATGTGGTTACAAATGATCTTCACCATGAAGCGTTCCAGCAGTGGGCTCAAGAATTTcccaatgttaaaataataaacgaTGGTACAAGAAGAAATAAGGACAGACATGGTGCCGTTGCCTGTCTCCAGTTGACAATCAAGTTGTGTGCTGTGGATGACGACTTACTAGTTATCGGAGGAGATACTTTATTCAAGGAGGACTTCAGCCTCAGGACATTTACAGAGAGATTCTTTGAAGTCCAATCTAAAGACAAAGAGAGCAATTTAGTGCTGGCATACCGATGCAAAGATGAGGAAACATCCAAATACGGGATTCTAGAGTTGGACGAGGACCTTAAAGTACAGTGTCTGAAAGAAAAACCTCTCTTAAGTGAAACAAATTCACGTGATGCTTGTCCATGCTTTTACTTGTTTTCAAAGACCTCACTTCCTCTTTTGGAAGTTTTTCTCAATGAGAAGAAGAACAACCCTATTGAAGAGCGGGATGCACCAGGGACCTTTCTGTCATGGCTGATATTAAGGAAGCCTGTGTATGTGCACAGGATATCTGGTCGATTTGATGTGGGAAATTTGGCATCGTATGTTGAATGTGACAAATACTTCAAGGACCAACTTCAAAATTCAGCTGTTTATTTAATGTAGTACATAATGAGAGTGAAACAATCTGaataaaacatcattttttgTC
>TCONS_00073518
TGCTCAGAGTACGGTCCTTACAAAAGTGTGCTCCTTTCCGATTTCCgcaaacttatttaaaatcacaAGCTGATCAAAGCTGTTGTAAATTCATTTTCAGCTGACAATGAAAGCTGTTATTCTGGCAGCAGGTTATGGCACGAGACTGCAGCGGGATATTGAGATCGACACGACGGGGAAATTCAAGCATTTGAAAGGCATTGCCAAACCTCTGCTTCCCGTCGGTTCATGTGCACTGATCTCACACTGGCTTCAGGCACTGACCAAAACAGGATGTGTGGACACTGTTTATGTGGTTGTGAGTCCACAAtaactgttctgttctgtttttaaaaatctaacaATATTTAGCTTTTAGTCATACTTTTTGacttatgattatgattattgtgCACAAAATCATAAACTGTATCGTCTATTAAACAGACAAATGATCTTCACCATGAAGCGTTCCAGCAGTGGGCTCAAGAATTTcccaatgttaaaataataaacgaTGGTACAAGAAGAAATAAGGACAGACATGGTGCCGTTGCCTGTCTCCAGTTGACAATCAAGTTGTGTGCTGTGGATGACGACTTACTAGTTATCGGAGGGTATGACTGTCACAACACTCCAGGACATAGTTTGAAATggctttaaaagaaaaatattttgttcattttgcAGAGATACTTTATTCAAGGAGGACTTCAGCCTCAGGACATTTACAGAGAGATTCTTTGAAGTCCAATCTAAAGACAAAGAGAGCAATTTAGTGCTGGCATACCGATGCAAAGATGAGGGTGAGCATAAAAACAGAACAGTACGCTTTCAGCTTTGCTAAACACATGgtcatttaattcaattattgAATATCAACTTTCAGAAACATCCAAATACGGGATTCTAGAGTTGGACGAGGACCTTAAAGTACAGTGTCTGAAAGAAAAACCTCTCTTAAGTGAAACAAATTCACGTGATGCTTGTCCATGCTTTTACTTGTTTTCAAAGACCTCACTTCCTCTTTTGGAAGTTTTTCTCAATGAGAAGAAGAACAACCCTATTGAAGAGCGGGATGCACCAGGGACCTTTCTGTCATGGCTGATATTAAGGAAGCCTGTGTATGTGCACAGGATATCTGGTCGATTTGATGTGGGAAATTTGGCATCGTATGTTGAATGTGACAAATACTTCAAGGACCAACTTCAAAATTCAGCTGTTTATTTAATGTAGTACATAATGAGAGTGAAACAATCTGaataaaacatcattttttgTC
>TCONS_00073517
TGCTCAGAGTACGGTCCTTACAAAAGTGTGCTCCTTTCCGATTTCCgcaaacttatttaaaatcacaAGCTGATCAAAGCTGTTGTAAATTCATTTTCAGCTGACAATGAAAGCTGTTATTCTGGCAGCAGGTTATGGCACGAGACTGCAGCGGGATATTGAGATCGACACGACGGGGAAATTCAAGCATTTGAAAGGCATTGCCAAACCTCTGCTTCCCGTCGGTTCATGTGCACTGATCTCACACTGGCTTCAGGCACTGACCAAAACAGGATGTGTGGACACTGTTTATGTGGTTACAAATGATCTTCACCATGAAGCGTTCCAGCAGTGGGCTCAAGAATTTcccaatgttaaaataataaacgaTGGTACAAGAAGAAATAAGGACAGACATGGTGCCGTTGCCTGTCTCCAGTTGACAATCAAGTTGTGTGCTGTGGATGACGACTTACTAGTTATCGGAGGGTATGACTGTCACAACACTCCAGGACATAGTTTGAAATggctttaaaagaaaaatattttgttcattttgcAGAGATACTTTATTCAAGGAGGACTTCAGCCTCAGGACATTTACAGAGAGATTCTTTGAAGTCCAATCTAAAGACAAAGAGAGCAATTTAGTGCTGGCATACCGATGCAAAGATGAGGAAACATCCAAATACGGGATTCTAGAGTTGGACGAGGACCTTAAAGTACAGTGTCTGAAAGAAAAACCTCTCTTAAGTGAAACAAATTCACGTGATGCTTGTCCATGCTTTTACTTGTTTTCAAAGACCTCACTTCCTCTTTTGGAAGTTTTTCTCAATGAGAAGAAGAACAACCCTATTGAAGAGCGGGATGCACCAGGGACCTTTCTGTCATGGCTGATATTAAGGAAGCCTGTGTATGTGCACAGGATATCTGGTCGATTTGATGTGGGAAATTTGGCATCGTATGTTGAATGTGACAAATACTTCAAGGACCAACTTCAAAATTCAGCTGTTTATTTAATGTAGTACATAATGAGAGTGAAACAATCTGaataaaacatcattttttgTC

Function

symbol description
zgc:136439 Predicted to enable nucleotidyltransferase activity. Predicted to act upstream of or within biosynthetic process.

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-2858 Predicted to enable nucleotidyltransferase activity. Predicted to act upstream of or within biosynthetic process.

Ensembl:

ensembl_id ENSDARG00000009267

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073515 False 600 mRNA 0.46 6 41080029 41082581
TCONS_00073516 False 1029 mRNA 0.42 8 41080042 41083181
TCONS_00073518 False 1261 lncRNA 0.39 5 41080094 41083181
TCONS_00073517 True 1050 lncRNA 0.41 7 41080094 41083181

Neighbor

gene id symbol gene type direction distance location
XLOC_037362 osgepl1 coding upstream 34156 41040294 ~ 41045873 (+)
XLOC_037361 ormdl1 coding upstream 45855 41024973 ~ 41034174 (+)
XLOC_037360 mstnb coding upstream 136892 40939336 ~ 40943137 (+)
XLOC_037358 hibch coding upstream 155086 40874194 ~ 40924943 (+)
XLOC_037359 BX323586.1 coding upstream 182846 40895649 ~ 40897183 (+)
XLOC_037364 slc40a1 coding downstream 19946 41103127 ~ 41113878 (+)
XLOC_037365 stat4 coding downstream 73106 41156287 ~ 41208343 (+)
XLOC_037366 stat1b coding downstream 135786 41218967 ~ 41247197 (+)
XLOC_037367 BX649377.1 coding downstream 166276 41249457 ~ 41266843 (+)
XLOC_037368 nemp2 coding downstream 376578 41459759 ~ 41481650 (+)
XLOC_037355 BX936447.2 non-coding upstream 801766 40278147 ~ 40278263 (+)
XLOC_037354 BX255912.2 non-coding upstream 942417 40137497 ~ 40137612 (+)
XLOC_037353 NA non-coding upstream 1214357 39863253 ~ 39865672 (+)
XLOC_037351 CR812481.1 non-coding upstream 2065431 39010432 ~ 39014598 (+)
XLOC_037369 BX571827.3 non-coding downstream 426767 41509948 ~ 41598827 (+)
XLOC_037370 BX571827.2 non-coding downstream 510315 41593496 ~ 41593610 (+)
XLOC_037372 dre-mir-732 non-coding downstream 599745 41682926 ~ 41683010 (+)
XLOC_037374 dre-mir-26a-1 non-coding downstream 650352 41733533 ~ 41733610 (+)

Expression


Co-expression Network