LOC110531814 (clrn3)


Basic Information

Item Value
gene id LOC110531814
gene name clrn3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 5329119 ~ 5335430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960684.1
TTTTATAACCTACAGGCTAGTCACGCCTGTCCTCTCCTCAGACCGTCACGCCTGTCCTGTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCGTCACGCCTGTCCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCATCACGCCTGTTCACTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCATCACACCTGTCCTCTCCTCAGACCATCACACCTGTCCTCTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCATCACGCCTGTCTTTGGGACACCAGAAGGGTAGATGATTATAGCCTACTACTCTGCTATTGAAGCTGATTCGGAGAGTTACAGAACCAATAAGGGTTTGGAcgtcttcatcttcttcttcatcgGTGTGGCTGGAATATTGTGACAATGCCCTCCACCAAGAAGGCTCTGCATTTTCTGAGTAGTGCGCTGGCTACCACGGTATCCGTGGCGATTTTAGGTTATGGGATGTCGACAGAATGGGCCGTttccaaaatgctttgctctggATCTGAAAACGTTTTCACCAACGGCTCCGCCAACATATCATACGAGCTTTTCTATGGGGCGATCGCCAGAGGTTCTTGTCCGGTGTTCGGAGGTGAAAAGACCATTCAAGTGTTTGAGAAGTTGGCAGAGACAGGTGGAGCTCCTCAGATCCTCCATGGCATAGTGATCACCCTCCTGGCCCtgtgtctgctctgctctgctggcaGCATCCTCATCACGCTGTACAACAGCGTCAGTAACCCCTACCAGACGTACAtgggacccatagggctctacacATGCAGCTCTGGCAGTGCGTGCATCTCCTTCCTGGTGCTCATCCTGTACGTAGTGAACGTCCAGCTGACCGAAATGTCTGAAGACCTGGTTAAGAACGACGTGGGAATCGTTTCAGTCTACCTGAAGGACAAGACCTCAGAGTTCCAGGTGGGATACTTCCTGCTGATCCCCTACATGGTGCTGAGTCTGCTAGCCATCCTCCTGGTGTATCTGTTTGAGCACGctgcctacacacacagacaggagcaGCAGAGGCCCACGGAGGACGCCCCTAAAGAGATCATGATGtattaatatacacacacatcagGATACAGATTCATAAGATCCTGACTACAACATCTCCCCAACAGACTGACACTGACACTGTGTTGAGTAGTGAAACTCAGTGTCCTTGAAATGGGCGTGTAGGATCCAGGACTGATCCGAGCTCTTATAACACATCTCACAGGCTAATATATAATTAACTCAGATCACCTTGTTTCATCGTTACTACATTTTCCTCTTGCTCTCTGTTTATATATTTATGAATAGCTGACATTTACAATCCACTTGAAttcaaaatgacaaaaaaaatgacacTGCCTGCTTAGTACAGTACCCTAAGGTTAATGCTGTGTTTAGCTAAAAACAGAAGTATACAGCAAGTTGATTACAGTACTACATAGTTTGTTTTGTTAAATACCAGAAGACAATACATTGGTTTCTTCCATAAATACATCATAATATATATTCTCTAAAATGTCAATTCTAATAATAAACCGTGTGGATATTGAGGATTTTCTCGCTTAAAAGGGGTAATCTGCAATTCTAACAAATAACAAACCTACCACCCCCACCATTGATTTTGTAAACAGCTGAAAGATGGGGCTACAGGAATGTCTCCCTCTCAAATTCATGCAATAGAGCTTTGATTACAATGACTCACAATGACTCACCATCCATCcatagccagcagcataccaccctgcatccca
>XM_036960683.1
TTTATAACCTACAGGCTAGTCACGCCTGTCCTCTCCTCAGACCGTCACGCCTGTCCTGTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCGTCACGCCTGTCCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCATCACGCCTGTCCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCGTCACACCTGTCCTCTCCTCAGACCATCACGCCTGTTCACTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCATCACACCTGTCCTCTCCTCAGACCATCACACCTGTCCTCTCCTCAGACCATCACGCCTGTTCTCTCCTCAGACCATCACGCCTGTCTTTGGGACACCAGAAGGGTAGATGATTATAGCCTACTACTCTGCTATTGAAGCTGATTCGGAGAGTTACAGAACCAATAAGGGTTTGGAcgtcttcatcttcttcttcatcgGTGTGGCTGGAATATTGTGACAATGCCCTCCACCAAGAAGGCTCTGCATTTTCTGAGTAGTGCGCTGGCTACCACGGTATCCGTGGCGATTTTAGGTTATGGGATGTCGACAGAATGGGCCGTttccaaaatgctttgctctggATCTGAAAACGTTTTCACCAACGGCTCCGCCAACATATCATACGAGCTTTTCTATGGGGCGATCGCCAGAGGTTCTTGTCCGGTGTTCGGAGGTGAAAAGACCATTCAAGTGTTTGAGAAGTTGGCAGAGACAGGTGGAGCTCCTCAGATCCTCCATGGCATAGTGATCACCCTCCTGGCCCtgtgtctgctctgctctgctggcaGCATCCTCATCACGCTGTACAACAGCGTCAGTAACCCCTACCAGACGTACAtgggacccatagggctctacacATGCAGCTCTGGCAGTGCGTGCATCTCCTTCCTGGTGCTCATCCTGTACGTAGTGAACGTCCAGCTGACCGAAATGTCTGAAGACCTGGTTAAGAACGACGTGGGAATCGTTTCAGTCTACCTGAAGGACAAGACCTCAGAGTTCCAGGTGGGATACTTCCTGCTGATCCCCTACATGGTGCTGAGTCTGCTAGCCATCCTCCTGGTGTATCTGTTTGAGCACGctgcctacacacacagacaggagcaGCAGAGGCCCACGGAGGACGCCCCTAAAGAGATCATGATGtattaatatacacacacatcagGATACAGATTCATAAGATCCTGACTACAACATCTCCCCAACAGACTGACACTGACACTGTGTTGAGTAGTGAAACTCAGTGTCCTTGAAATGGGCGTGTAGGATCCAGGACTGATCCGAGCTCTTATAACACATCTCACAGGCTAATATATAATTAACTCAGATCACCTTGTTTCATCGTTACTACATTTTCCTCTTGCTCTCTGTTTATATATTTATGAATAGCTGACATTTACAATCCACTTGAAttcaaaatgacaaaaaaaatgacacTGCCTGCTTAGTACAGTACCCTAAGGTTAATGCTGTGTTTAGCTAAAAACAGAAGTATACAGCAAGTTGATTACAGTACTACATAGTTTGTTTTGTTAAATACCAGAAGACAATACATTGGTTTCTTCCATAAATACATCATAATATATATTCTCTAAAATGTCAATTCTAATAATAAACCGTGTGGATATTGAGGATTTTCTCGCTTAAAAGGGGTAATCTGCAATTCTAACAAATAACAAACCTACCACCCCCACCATTGATTTTGTAAACAGCTGAAAGATGGGGCTACAGGAATGTCTCCCTCTCAAATTCATGCAATAGAGCTTTGATTACAATGACTCACAATGACTCACCATCCATCcatagccagcagcataccaccctgcatccca

Function

symbol description
clrn3 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
clarin-3-like

GO: NA

KEGG:

id description
K23841 CLRN; clarin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960684.1 False 1994 mRNA 0.48 3 5329119 5335430
XM_036960683.1 True 1993 mRNA 0.48 4 5329120 5335430
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118943917 NA coding upstream 282739 5015646 ~ 5046380 (+)
LOC118943916 NA coding upstream 409868 4904967 ~ 4919251 (+)
LOC118943824 NA coding upstream 549645 4778594 ~ 4779474 (+)
LOC118943867 NA coding upstream 551649 4776634 ~ 4777470 (+)
LOC118943915 NA coding upstream 553928 4711847 ~ 4775191 (+)
LOC118943907 NA coding downstream 15315 5350745 ~ 5352626 (+)
LOC118943911 LOC106589166 coding downstream 369534 5704964 ~ 5739232 (+)
LOC118943860 LOC106577385 coding downstream 670384 6005814 ~ 6077481 (+)
LOC110510837 LOC106577343 coding downstream 751306 6086736 ~ 6331870 (+)
LOC110511038 LOC106591983 coding downstream 1004557 6339987 ~ 6367016 (+)
G1824357 NA non-coding upstream 7948 5243111 ~ 5321171 (+)
G1824342 NA non-coding upstream 46698 5198536 ~ 5282421 (+)
G1824374 NA non-coding upstream 48010 5280308 ~ 5281109 (+)
G1824372 NA non-coding upstream 52897 5275930 ~ 5276222 (+)
G1824371 NA non-coding upstream 54562 5271094 ~ 5274557 (+)
G1824609 NA non-coding downstream 19231 5354661 ~ 5354948 (+)
G1824615 NA non-coding downstream 35288 5370718 ~ 5371010 (+)
G1824617 NA non-coding downstream 37778 5373208 ~ 5373411 (+)
G1824620 NA non-coding downstream 41283 5376713 ~ 5376925 (+)
G1824624 NA non-coding downstream 44171 5379601 ~ 5379999 (+)
G1824231 LOC107579696 other upstream 501820 4826952 ~ 4827299 (+)
G1824228 NA other upstream 509551 4805496 ~ 4819568 (+)
G1823100 NA other upstream 1323796 4004299 ~ 4005323 (+)
G1822905 LOC100136344 other upstream 1414283 3900806 ~ 3918363 (+)
G1823015 NA other upstream 1532001 3792972 ~ 3797118 (+)
G1824676 LOC106593814 other downstream 142683 5478113 ~ 5487048 (+)
G1824784 NA other downstream 384793 5720223 ~ 5720741 (+)
G1824861 NA other downstream 548373 5883803 ~ 5884315 (+)
uros hem4 other downstream 1057164 6376624 ~ 6394234 (+)

Expression

LOC110531814(clrn3) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

LOC110531814(clrn3) Expression in each Bioproject

Bar chart with 19 bars.
LOC110531814(clrn3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network