Item | Value |
---|---|
gene id | XLOC_037366 |
gene name | stat1b |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007120.7 |
NCBI id | CM002893.2 |
chromosome length | 56459846 |
location | 41218967 ~ 41247197 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
stat1b | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasm and nucleus. Is expressed in cardiovascular system; intermediate cell mass of mesoderm; kidney; and lateral plate mesoderm. Human ortholog(s) of this gene implicated in breast cancer (multiple); immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Orthologous to human STAT1 (signal transducer and activator of transcription 1). |
id | name | namespace |
---|---|---|
GO:0030097 | hemopoiesis | biological_process |
GO:0060337 | type I interferon signaling pathway | biological_process |
GO:0019221 | cytokine-mediated signaling pathway | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0042127 | regulation of cell population proliferation | biological_process |
GO:0006952 | defense response | biological_process |
GO:0007259 | receptor signaling pathway via JAK-STAT | biological_process |
GO:0043434 | response to peptide hormone | biological_process |
GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0005829 | cytosol | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
id | description |
---|---|
ZDB-GENE-030616-23 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasm and nucleus. Is expressed in cardiovascular system; intermediate cell mass of mesoderm; kidney; and lateral plate mesoderm. Human ortholog(s) of this gene implicated in breast cancer (multiple); immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Orthologous to human STAT1 (signal transducer and activator of transcription 1). |
ensembl_id | ENSDARG00000076182 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00073524 | False | 4113 | mRNA | 0.38 | 22 | 41218967 | 41247197 |
TCONS_00073525 | False | 3189 | mRNA | 0.42 | 23 | 41218974 | 41247189 |
TCONS_00073526 | False | 535 | mRNA | 0.46 | 5 | 41224100 | 41227570 |
TCONS_00073527 | False | 363 | lncRNA | 0.40 | 2 | 41238241 | 41240872 |
TCONS_00075179 | False | 1070 | lncRNA | 0.41 | 6 | 41238241 | 41246508 |
TCONS_00073528 | True | 812 | lncRNA | 0.42 | 5 | 41240768 | 41246508 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_037365 | stat4 | coding | upstream | 10624 | 41156287 ~ 41208343 (+) |
XLOC_037364 | slc40a1 | coding | upstream | 105089 | 41103127 ~ 41113878 (+) |
XLOC_037363 | zgc:136439 | coding | upstream | 135786 | 41080029 ~ 41083181 (+) |
XLOC_037362 | osgepl1 | coding | upstream | 173094 | 41040294 ~ 41045873 (+) |
XLOC_037361 | ormdl1 | coding | upstream | 184793 | 41024973 ~ 41034174 (+) |
XLOC_037367 | BX649377.1 | coding | downstream | 2260 | 41249457 ~ 41266843 (+) |
XLOC_037368 | nemp2 | coding | downstream | 212562 | 41459759 ~ 41481650 (+) |
XLOC_037369 | BX571827.3 | coding | downstream | 262751 | 41509948 ~ 41598827 (+) |
XLOC_037370 | BX571827.2 | coding | downstream | 346299 | 41593496 ~ 41593610 (+) |
XLOC_037371 | spegb | coding | downstream | 365445 | 41612642 ~ 41681053 (+) |
XLOC_037359 | BX323586.1 | non-coding | upstream | 321784 | 40895649 ~ 40897183 (+) |
XLOC_037355 | BX936447.2 | non-coding | upstream | 940704 | 40278147 ~ 40278263 (+) |
XLOC_037354 | BX255912.2 | non-coding | upstream | 1081355 | 40137497 ~ 40137612 (+) |
XLOC_037353 | NA | non-coding | upstream | 1353295 | 39863253 ~ 39865672 (+) |
XLOC_037351 | CR812481.1 | non-coding | upstream | 2204369 | 39010432 ~ 39014598 (+) |
XLOC_037372 | dre-mir-732 | non-coding | downstream | 435729 | 41682926 ~ 41683010 (+) |
XLOC_037374 | dre-mir-26a-1 | non-coding | downstream | 486336 | 41733533 ~ 41733610 (+) |