LOC110531799 (LOC106577395)


Basic Information

Item Value
gene id LOC110531799
gene name LOC106577395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 8081754 ~ 8089912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960185.1
CAGAATATCTGCAGAGCTGAGCAGCTGTGCGACGGTAGAGTTACATGTATAGTCGGCTTGACTGGGAAGTCTTTGTCCTCAATCGCagcaacaaaaataaataaactggaTTAGCAACAGAAAGAACATTTCCACGTTAGCAACATATCTTTGTAAGTATCATTACTGTCACTGGCTATTGTTTCAACCTATTGTCTCGACCGTCAACTTTGAACAAGGGAATGAAaggactaacgttagctagcttagtCAACTGCCTTTCCTCCACTCGAACCTGATCTATGATCCCTGAGACTTGGAAAGTTACAAGAAGTTGAACACTTGACCAGTTGGAAATGATGCATGCACTTCCTACAACCATGATGGTCCATGATTTAGATAtcttcagctcatctccttctccAATGGACGCCACCGCCAAAAGGTCTTCATGGGGGAAACTGGTGCAGAAGTTAACGGACTTCAGTGGAGACGGCCAGAGCAGCCGTCACAGTTTAGACTCCGACTCAGACAATGGCAGCAGGACTGATCTCTCAGACTCCGGGTTTGACTTTCCCTCTATCTCCTCATCTGATGACTTCAGCAACGTGCTATATGAGGATCTCCTCTCAATGGAGGAGACCCTTCTGAAAGAACTTGTGCACCTAATTGCCAGTAGCTTAAGGGAAGCCAAAGACGGTGCCCTTAGATGTTCGAAACTACTCATCCCTGAGAAGCTTCTAGAACACATAGGCCAAGAGCTCCTTCACCTGGCGGCCAGCGAGCCCTGTGGCCTGAGGGGGGCTCTCATAGACCTCTGTGTGGAACAGGGGGAGGTGTGTCAGAGTATGGAACAGATCGCGGTGGACCCATATCTCGTCCCTACCTTCCAGCTCACACTGGTGCTGAGGCTCGATTCTGGAGGACTGTGGCCCAAAATCCAAGGGCTTTTCTCCACAAAGTCTCCATCCAGTCCCGTAAAGAGACAGGCAATTAGACTGAGCACGGGCTTCAGAGTGATCAAGAAGAAACTGTACAGCTCTGAAGAGTTGCTCATTGAAGAATGCTGAAAGAAACCAAAGAGACTTTCTTTAGATATTTTTCTAATAAACCTTGTACCAAGTGTCCTACCTACAACGCTCATCAGAGCCCTAGTGATCAACGTTTGGGATTCTAGTCAAATGTATGATTTTCTAGGACATTTTCTTAACTGTTAAGATGAATCGCCGATTACTTTGCTATGTTCATTATTTGCCGATTGGCGTTCCTGTGTAGGGGAGCCACCGTAAATGGTACGTGGAAAGTTAATAAGAACAACTATTGTGCTTAAGAGAATGGAACAGGGAGCCACACAGTAAATGGTACGTGAGTAGTTTAGTGTGCTTAAGAGAATGGTGTTAACCCGAACACTGAAAAATGAAGTTTCTGGCACTTTTGCAAACCACTATCTATTTTTATACAAGATGAGTGGTTTGGTTTTCCATTTATTGTTAAAAATGTTTACCTGTTTCTATTGAAACCAGACAATGGCAGCTAGCTGTGTGGTAATGTTTGTATGTGGCCATTTAGAAACTGTGGTAATAATTTTTTCATGGCATTTCATTGTACACTATGGTGAGGGGACCAGATTGACATGTTTGGTTAGAGACCAACATTACTTAGCAGTACTGGCTTCTCCGTCTGTAGCGTCCATTCTGTGAACCACAGGTCAGTTTACTTGATTCTTTATTTCCGGTTTCGACTGGATTGTCCTCCTGCATACTCATCTGTGCATCATTTTATTTGATATTCAAATATCTGTACTGTCTTGATACTTTCCATTTTATGAACCTCGgacaataaaatattttttttttacaaaa
>XM_021615231.2
ACAGTTTCGTCGTTGCAGAATATCTGCAGAGCTGAGCAGCTGTGCGACGGTAGAGTTACATGTATAGTCGGCTTGACTGGGAAGTCTTTGTCCTCAATCGCagcaacaaaaataaataaactggaTTAGCAACAGAAAGAACATTTCCACGTTAGCAACATATCTTTAACCTGATCTATGATCCCTGAGACTTGGAAAGTTACAAGAAGTTGAACACTTGACCAGTTGGAAATGATGCATGCACTTCCTACAACCATGATGGTCCATGATTTAGATAtcttcagctcatctccttctccAATGGACGCCACCGCCAAAAGGTCTTCATGGGGGAAACTGGTGCAGAAGTTAACGGACTTCAGTGGAGACGGCCAGAGCAGCCGTCACAGTTTAGACTCCGACTCAGACAATGGCAGCAGGACTGATCTCTCAGACTCCGGGTTTGACTTTCCCTCTATCTCCTCATCTGATGACTTCAGCAACGTGCTATATGAGGATCTCCTCTCAATGGAGGAGACCCTTCTGAAAGAACTTGTGCACCTAATTGCCAGTAGCTTAAGGGAAGCCAAAGACGGTGCCCTTAGATGTTCGAAACTACTCATCCCTGAGAAGCTTCTAGAACACATAGGCCAAGAGCTCCTTCACCTGGCGGCCAGCGAGCCCTGTGGCCTGAGGGGGGCTCTCATAGACCTCTGTGTGGAACAGGGGGAGGTGTGTCAGAGTATGGAACAGATCGCGGTGGACCCATATCTCGTCCCTACCTTCCAGCTCACACTGGTGCTGAGGCTCGATTCTGGAGGACTGTGGCCCAAAATCCAAGGGCTTTTCTCCACAAAGTCTCCATCCAGTCCCGTAAAGAGACAGGCAATTAGACTGAGCACGGGCTTCAGAGTGATCAAGAAGAAACTGTACAGCTCTGAAGAGTTGCTCATTGAAGAATGCTGAAAGAAACCAAAGAGACTTTCTTTAGATATTTTTCTAATAAACCTTGTACCAAGTGTCCTACCTACAACGCTCATCAGAGCCCTAGTGATCAACGTTTGGGATTCTAGTCAAATGTATGATTTTCTAGGACATTTTCTTAACTGTTAAGATGAATCGCCGATTACTTTGCTATGTTCATTATTTGCCGATTGGCGTTCCTGTGTAGGGGAGCCACCGTAAATGGTACGTGGAAAGTTAATAAGAACAACTATTGTGCTTAAGAGAATGGAACAGGGAGCCACACAGTAAATGGTACGTGAGTAGTTTAGTGTGCTTAAGAGAATGGTGTTAACCCGAACACTGAAAAATGAAGTTTCTGGCACTTTTGCAAACCACTATCTATTTTTATACAAGATGAGTGGTTTGGTTTTCCATTTATTGTTAAAAATGTTTACCTGTTTCTATTGAAACCAGACAATGGCAGCTAGCTGTGTGGTAATGTTTGTATGTGGCCATTTAGAAACTGTGGTAATAATTTTTTCATGGCATTTCATTGTACACTATGGTGAGGGGACCAGATTGACATGTTTGGTTAGAGACCAACATTACTTAGCAGTACTGGCTTCTCCGTCTGTAGCGTCCATTCTGTGAACCACAGGTCAGTTTACTTGATTCTTTATTTCCGGTTTCGACTGGATTGTCCTCCTGCATACTCATCTGTGCATCATTTTATTTGATATTCAAATATCTGTACTGTCTTGATACTTTCCATTTTATGAACCTCGgacaataaaatattttttttttacaaaa
>XM_036960186.1
acacttacaacgctgcattttggtccgatccttcctactcctcatcaGACGAAGAAGTTCGTTACAACTGCATCAGTTGGCCAAGTCTTTTCACATTTAAAATCTGATTTGCTAGCACTGCAGAGGTCACTGTTGGATCTACAGTTGGTGAACCTGATCTATGATCCCTGAGACTTGGAAAGTTACAAGAAGTTGAACACTTGACCAGTTGGAAATGATGCATGCACTTCCTACAACCATGATGGTCCATGATTTAGATAtcttcagctcatctccttctccAATGGACGCCACCGCCAAAAGGTCTTCATGGGGGAAACTGGTGCAGAAGTTAACGGACTTCAGTGGAGACGGCCAGAGCAGCCGTCACAGTTTAGACTCCGACTCAGACAATGGCAGCAGGACTGATCTCTCAGACTCCGGGTTTGACTTTCCCTCTATCTCCTCATCTGATGACTTCAGCAACGTGCTATATGAGGATCTCCTCTCAATGGAGGAGACCCTTCTGAAAGAACTTGTGCACCTAATTGCCAGTAGCTTAAGGGAAGCCAAAGACGGTGCCCTTAGATGTTCGAAACTACTCATCCCTGAGAAGCTTCTAGAACACATAGGCCAAGAGCTCCTTCACCTGGCGGCCAGCGAGCCCTGTGGCCTGAGGGGGGCTCTCATAGACCTCTGTGTGGAACAGGGGGAGGTGTGTCAGAGTATGGAACAGATCGCGGTGGACCCATATCTCGTCCCTACCTTCCAGCTCACACTGGTGCTGAGGCTCGATTCTGGAGGACTGTGGCCCAAAATCCAAGGGCTTTTCTCCACAAAGTCTCCATCCAGTCCCGTAAAGAGACAGGCAATTAGACTGAGCACGGGCTTCAGAGTGATCAAGAAGAAACTGTACAGCTCTGAAGAGTTGCTCATTGAAGAATGCTGAAAGAAACCAAAGAGACTTTCTTTAGATATTTTTCTAATAAACCTTGTACCAAGTGTCCTACCTACAACGCTCATCAGAGCCCTAGTGATCAACGTTTGGGATTCTAGTCAAATGTATGATTTTCTAGGACATTTTCTTAACTGTTAAGATGAATCGCCGATTACTTTGCTATGTTCATTATTTGCCGATTGGCGTTCCTGTGTAGGGGAGCCACCGTAAATGGTACGTGGAAAGTTAATAAGAACAACTATTGTGCTTAAGAGAATGGAACAGGGAGCCACACAGTAAATGGTACGTGAGTAGTTTAGTGTGCTTAAGAGAATGGTGTTAACCCGAACACTGAAAAATGAAGTTTCTGGCACTTTTGCAAACCACTATCTATTTTTATACAAGATGAGTGGTTTGGTTTTCCATTTATTGTTAAAAATGTTTACCTGTTTCTATTGAAACCAGACAATGGCAGCTAGCTGTGTGGTAATGTTTGTATGTGGCCATTTAGAAACTGTGGTAATAATTTTTTCATGGCATTTCATTGTACACTATGGTGAGGGGACCAGATTGACATGTTTGGTTAGAGACCAACATTACTTAGCAGTACTGGCTTCTCCGTCTGTAGCGTCCATTCTGTGAACCACAGGTCAGTTTACTTGATTCTTTATTTCCGGTTTCGACTGGATTGTCCTCCTGCATACTCATCTGTGCATCATTTTATTTGATATTCAAATATCTGTACTGTCTTGATACTTTCCATTTTATGAACCTCGgacaataaaatattttttttttacaaaa

Function

NR:

description
DNA damage-inducible transcript 4 protein

GO: NA

KEGG:

id description
K08270 DDIT4, REDD1; DNA-damage-inducible transcript 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960185.1 False 1841 mRNA 0.43 3 8081754 8083928
XM_021615231.2 False 1737 mRNA 0.44 3 8081754 8083943
XM_036960186.1 True 1720 mRNA 0.44 3 8081754 8089912
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110531557 fbx37 coding downstream 101946 7974919 ~ 7979808 (-)
LOC118943880 gpr26 coding downstream 672393 7397159 ~ 7409361 (-)
LOC110518105 LOC106592890 coding downstream 1180565 6885354 ~ 6901189 (-)
LOC110510773 LOC106613841 coding downstream 1268031 6746373 ~ 6813723 (-)
LOC110515214 bccip coding downstream 1705219 6367021 ~ 6376535 (-)
cj104 cj104 coding upstream 9396 8099308 ~ 8104167 (-)
LOC110515025 LOC106577347 coding upstream 193235 8276732 ~ 8289116 (-)
LOC118943919 LOC106560865 coding upstream 200558 8290470 ~ 8303415 (-)
LOC118936473 LOC106594692 coding upstream 213533 8303445 ~ 8314375 (-)
LOC110515815 LOC106594691 coding upstream 225710 8315622 ~ 8319738 (-)
G1826560 NA non-coding downstream 6048 8075338 ~ 8075706 (-)
G1826526 NA non-coding downstream 19620 8005315 ~ 8062134 (-)
G1826536 NA non-coding downstream 60701 8020349 ~ 8021053 (-)
G1826532 NA non-coding downstream 65033 8015439 ~ 8016721 (-)
G1826528 NA non-coding downstream 69451 8011313 ~ 8012303 (-)
G1826573 NA non-coding upstream 14381 8104293 ~ 8158495 (-)
G1826598 NA non-coding upstream 63261 8153173 ~ 8153615 (-)
G1826599 NA non-coding upstream 63949 8153861 ~ 8155405 (-)
G1826632 NA non-coding upstream 155198 8245110 ~ 8245417 (-)
G1826369 NA other downstream 120930 7959839 ~ 7960824 (-)
G1826079 NA other downstream 496777 7584564 ~ 7584977 (-)
G1825645 LOC106593297 other downstream 1154410 6926852 ~ 6943944 (-)
G1825658 NA other downstream 1255936 6823168 ~ 6825818 (-)
G1825582 NA other downstream 1421803 6658118 ~ 6659951 (-)
G1826594 NA other upstream 53271 8143183 ~ 8147004 (-)
G1827228 NA other upstream 752690 8842602 ~ 8948639 (-)
LOC110532987 LOC106596646 other upstream 761021 8838876 ~ 8945963 (-)
jakmip3 LOC106577179 other upstream 1022645 9049200 ~ 9133856 (-)
G1827339 NA other upstream 1069285 9159197 ~ 9159615 (-)

Expression

LOC110531799(LOC106577395) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110531799(LOC106577395) Expression in each Bioproject

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LOC110531799(LOC106577395) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network