cj104 (cj104)


Basic Information

Item Value
gene id cj104
gene name cj104
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 8099308 ~ 8104167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160610.1
GGGGGTTATTGTTGGGGTAGCTAACCAGAAACATAAACAACCGCTTTCTCCATCACCAGTGTTGGAATGGcagcctcctcctcatcctcctctgccGGAGGGGTTAGTGGGAGCTCCGTGACTGGCTCTGGATTCAGCGCGTCTGAGCTCATCCCCCCGCGTAAGGTCCTCTACACTTATCCCAAAGGAGCCGGGGAGATGATGGAAGACGGCTCAGACAGAtttctgtgtgagtctgtgttcAGCTACCAGGTGGCGTCAACACTGAAACAAGTGAAGCATGatcAACAGGTATCTAGAATGGAGAAACTGGCCAGTTTGGTTGAAGAGCTGGAAGCAGATGAGTGGCGTTACAAACCAATCGAACAGCTTTTGGGATTTACTCCGTCTTAGAGGTCCAAATAAAGACCTGCCCAGTAGCCCGCTAGCTGGTCACCACTGGAGGAACACGTTGACCGCAGAACACGACTTTATTTCCAACACATTTGCTTTATTGTCATTTGTTGTGTCATTCCCACAGGGAAGGATGTTCCTGCCTGTTATTGGCCAATGTTTAGCTGTGGTCACTAACTGGAGGAAGGAACACCCTGATACGAGAGAGCTATTGttgtgacctaaaaaaaaaaaaactttatcacTGCAATGAATTATGAATTGAGTAATTAATCATGTTATAGTGGGGAAATTGATGCATTCGTGTTTTActggtgttttttttaaataaactaaATTATATTAAGGAATAAGGAATCCTCTTCCTATGTATTAAAATGAAAACATGAAGTACTTGGATTATCATTTATTAAATATtgaaatacaaatatacagaatc
>TU2091797
GCCGTAAAGCGGGGGTTATTGTTGGGGTAGCTAACCAGAAACATAAACAACCGCTTTCTCCATCACCAGTGTTGGAATGGcagcctcctcctcatcctcctctgccGGAGGGGTTAGTGGGAGCTCCGTGACTGGCTCTGGATTCAGCGCGTCTGAGCTCATCCCCCCGCGTAAGGTCCTCTACACTTATCCCAAAGGAGCCGGGGAGATGATGGAAGACGGCTCAGACAGAtttctgtgtgagtctgtgttcAGCTACCAGGTGGCGTCAACACTGAAACAAGTGAAGCATGatcAACAGGTATCTAGAATGGAGAAACTGGCCAGTTTGGTTGAAGAGCTGGAAGCAGATGAGTGGCGTTACAAACCAATCGAACAGCTTTTGGGATTTACTCCGTCTTAGAGGTCCAAATAAAGACCTGCCCAGTAGCCCGCTAGCTGGTCACCACTGGAGGAACACGTTGACCGCAGAACACGACTTTATTTCCAACACATTTGCTTTATTGTCATTTGTTGTGTCATTCCCACAGGGAAGGATGTTCCTGCCTGTTATTGGCCAATGTTTAGCTGTGGTCACTAACTGGAGGAAGGAACACCCTGATACGAGAGAGCTATTGttgtgacctaaaaaaaaaaaaactttatcacTGCAATGAATTATGAATTGAGTAATTAATCATGTTATAGTGGGGAAATTGATGCATTCGTGTTTTActggtgttttttttaaataaactaaATTATATTAAGGAATAAGGAATCCTCTTCCTATGTATTAAAATGAAAACATGAAGTACTTGGATTATCATTTATTAAATATtgaaatacaaatatacaga

Function

NR:

description
CJ104 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160610.1 False 832 mRNA 0.43 4 8099308 8104157
TU2091797 True 839 lncRNA 0.43 4 8099311 8104167

Neighbor

gene id symbol gene type direction distance location
LOC110531799 LOC106577395 coding downstream 9396 8081754 ~ 8089912 (-)
LOC110531557 fbx37 coding downstream 119500 7974919 ~ 7979808 (-)
LOC118943880 gpr26 coding downstream 689947 7397159 ~ 7409361 (-)
LOC110518105 LOC106592890 coding downstream 1198119 6885354 ~ 6901189 (-)
LOC110510773 LOC106613841 coding downstream 1285585 6746373 ~ 6813723 (-)
LOC110515025 LOC106577347 coding upstream 178990 8276732 ~ 8289116 (-)
LOC118943919 LOC106560865 coding upstream 186313 8290470 ~ 8303415 (-)
LOC118936473 LOC106594692 coding upstream 199288 8303445 ~ 8314375 (-)
LOC110515815 LOC106594691 coding upstream 211465 8315622 ~ 8319738 (-)
star2 LOC106577426 coding upstream 561252 8665409 ~ 8677018 (-)
G1826566 NA non-coding downstream 10930 8087754 ~ 8088378 (-)
G1826525 NA non-coding downstream 11755 8054166 ~ 8087553 (-)
G1826560 NA non-coding downstream 23602 8075338 ~ 8075706 (-)
G1826536 NA non-coding downstream 78255 8020349 ~ 8021053 (-)
G1826532 NA non-coding downstream 82587 8015439 ~ 8016721 (-)
G1826573 NA non-coding upstream 136 8104293 ~ 8158495 (-)
G1826598 NA non-coding upstream 49016 8153173 ~ 8153615 (-)
G1826599 NA non-coding upstream 49704 8153861 ~ 8155405 (-)
G1826632 NA non-coding upstream 140953 8245110 ~ 8245417 (-)
G1826369 NA other downstream 138484 7959839 ~ 7960824 (-)
G1826079 NA other downstream 514331 7584564 ~ 7584977 (-)
G1825645 LOC106593297 other downstream 1171964 6926852 ~ 6943944 (-)
G1825658 NA other downstream 1273490 6823168 ~ 6825818 (-)
G1825582 NA other downstream 1439357 6658118 ~ 6659951 (-)
G1826594 NA other upstream 39026 8143183 ~ 8147004 (-)
G1827228 NA other upstream 738445 8842602 ~ 8948639 (-)
LOC110532987 LOC106596646 other upstream 746776 8838876 ~ 8945963 (-)
jakmip3 LOC106577179 other upstream 1008400 9049200 ~ 9133856 (-)
G1827339 NA other upstream 1055040 9159197 ~ 9159615 (-)

Expression


Co-expression Network