LOC110515875 (spock2)


Basic Information

Item Value
gene id LOC110515875
gene name spock2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 8165316 ~ 8278334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959871.1
tcatGCTCGCTCTGCCCTGATCGCACTGCTGTAAACTCGTCTATGAGAAACGCGTAGTCTATTCGAGTCGGGCTGCCTGGCTACATCGCATCGTTAAAACCTTGGTCTAGAGGACAGGATAAGATATAGCGGCTACTAAAACAGCAACACAAATATGGTCGGGATGAGAGATGTGGTTTGCCTCCTGCTGCCAGCCGTCGTGCTGTTCGGCACATCGATGCAGGTGGAAGTGAAAggtgggaaagagggagaaaaagcaGGGAATTTCATGGAAGATAAGCAATGGCTATCAACCATTTCTCAGTACAGCCGGAAGATCAAACACTGGAATCGCTTCAGAGACGAAGTTGAGGATGACTACATCAGGAATGTGGAGGAAACCCCAGTATCGGATGAAActGTGGACACCACCAAGGATCCGTGTCAGAAGGTGAAGTGTAGCCGCCACAAGATCTGTGTTACCCAGGGTTACCAGAGAGCAACGTGTGTCAATGTCAACCGGAAGAAGCTGGAGCACAGAAGCAGACAGCCTGTAGAGCTGATGCCTCATGAGAACACCTGTAAGCCCTGCCCTGTGGTTGCTGCCTCCCCTGTGTGTGGTACGGATAAACACAACTACGCCTCTCAGtgtaAGTTGGAGCAGCAGGGCTGTTTAACAGGGAAGGATCTGAGTGTGAAATGCCAGGGCATGTGCCCCTGTGCCACCGCTGCCGCCCCcatcacagagacagaggacaaacACGAGAGCTGTACCGGGCAGGACCTGGCAGACCTTGGAGACCGCCTCAGAGACTGGTTCCAACTGCTCCATGGAAACGCCAAGCAGAACAACTCAGGCAAGCCTGGACCTGGCACCGCCTcagTCCTGGACAAGAGCCTGGTGGCCAGCTGTAAGGATTCCATAGGCTGGATGTTCTCGAAGCTGGATACTAATACTGACCTGTATCTGGACCAGGCCGAGCTGGCAGCTATCAACCTGGACAAGTATGAGGTGTGCATCCGCCCCTTCTTCAACTCCTGTGACGGCTACAAGGATGGGAGGGTATCCACCGCAGAGTGGTGCCTCTGCTTCTGGAGGGAAAAGCCCGCTTGTCTGGCTGAACTAGAGAGGATCCAGGTTCAACAAGTGGCCAAGAAGAAGCCTGgCATGTACATCCCCAGCTGCGATGAGGACGGCTACTACAGGCAGCTGCAGTGTGACCAGAGCATGGGAGAGTGTTGGTGTGTTGACCAGCACGGAGGAGAAATTATGGGCTCTAGAATCCATGGCAACCCTGACTGTGATGAACTGCTGGGATATTCCGGAGATTTTGGGAGTGGCGTGGGatgggaggatgaggaagagaaggaggagaacggagaagaggcggaggaggaggaagaggaagagggggaggcagaCGACGGAGGATACATCTGGTAGAAACTGAACCCAAACGGAGAACTTGGTCAGGATGGATCCACTGGCCTACAACTACAGGGATGATGGCTgaggcttgcatcccaaatggcaccctattccctatgtagtgcactacttttgaccaggtctcATAGGGACACCCATAGGGGgtctgtcaaaagtagtgcactatatagggaatagggtgtcacttgGGATGCAAGCATCTTTTTCTCCTAACAGCAAAAGATTTGGGGATTTCGGGGCATGGAATTCTGTCTCTATTGTCGACGTGTGGATCTGGGGagtgggaggtggggggggggggggggggggggggtacagtggTGAGATTGCTAGTTTTTGTCTTAAATATGTGAATTATTGCTTCATTCTTTTCTGTTTTGTAAGCAAGAGAGCGTTCTGTTTCACCATAGAGAACTATCATCTGATAATCTGGCCATCAAAATGTTACTGTCAGAAATGCATCTAGTATCATACATTTATGTTCCATTGTGAACAATTGCTTGAATATTGAAATCGCAGATCTGCTAAAAATGGAACGGATTGAGACCTGAGACGGTGGGAAAGGGTTCACTATTTACCTGGTTGTGTTGTCAAAATCAGAGTTGCTGCGTATATAAATCCTGTAGCTATGATCTATGAAGCAGGACAACGAGACTAGACTACTCTATATCCCAAATGGAACActcttccctttatagtgtacaGCTTTTTAATCAGGGCCCATAAAGCTCTGGTCTGAAGTCGTGCACTATGCAGGGATTAGGGAGCCACTTGGGATGCAAGCCTCTCTTTTAGAGGGTGATTCCACTACTGagagaaattattatttttctctTAAAGGTTTCTTAACGGAGCATATTTCTCGGTTCgatctttatttaaaaaaaaattgtatttcacctttatttaaccaggtaggctagttgagaacaagttcttgaCGCGGATGTCGTCAAAGTAATGTTGCTCATTGGATCATTTGTGAAAATGACCGTGTTTTCGTGCATTATGTAGGTAAATTCAGGACTGACAAACAGGCTTGTTATGAAGGAAGGCTTTTGTGCTACTTTATTGCTAAAAGGAATACTGATGTACACGGCTCTCGGCGGTTTATAAACCtttaaaatactatatatatatcgATTAACATAGACACAATAACTACTAATATCTCTTATGAAACTGCTATGGGAACTTTGTTACTTATTGAGTTATTTCAACTCAAAACTTGTAGAATGTATATTACTTGTCCCATCAACCTACACCACCAAGGGtaacatcccaaatgacaccctatgccctatatagtgcactactttctatccAGGGCTCATACAGActctctggtccaaagtagtgtactatatagggaatggtatTCCATTTGGGATGATGCAGACACTACCTTATCCAATGGGAACTCTGTAAATCACTTCAAAGAATGGTGTCAGTCGATGTTCTATTCTCAGTCTTTATTTTGGTGTTCATAAAACAACGCGTATATGCTACTTGAAGTTCTGTGTGTATACTTGAAATCTCACCGTTAGATGGTTTATCTACGAGTATATCGTTGCCATTATTATTCCATCACTTCAGTTGTTTTTAGTATGTGGCATGTTATAGTGAACATGAATGTACTTCTCCTAGGCTGAGCACTTTACTATTAAAGGCATTGGGGCCCCCAAAAAACC
>XM_036959870.1
atGCTCGCTCTGCCCTGATCGCACTGCTGTAAACTCGTCTATGAGAAACGCGTAGTCTATTCGAGTCGGGCTGCCTGGCTACATCGCATCGTTAAAACCTTGGTCTAGAGGACAGGATAAGATATAGCGGCTACTAAAACAGCAACACAAATATGGTCGGGATGAGAGATGTGGTTTGCCTCCTGCTGCCAGCCGTCGTGCTGTTCGGCACATCGATGCAGGTGGAAGTGAAAggtgggaaagagggagaaaaagcaGGGAATTTCATGGAAGATAAGCAATGGCTATCAACCATTTCTCAGTACAGCCGGAAGATCAAACACTGGAATCGCTTCAGAGACGAAGTTGAGGATGACTACATCAGGAATGTGGAGGAAACCCCAGTATCGGATGAAActGTGGACACCACCAAGGATCCGTGTCAGAAGGTGAAGTGTAGCCGCCACAAGATCTGTGTTACCCAGGGTTACCAGAGAGCAACGTGTGTCAATGTCAACCGGAAGAAGCTGGAGCACAGAAGCAGACAGCCTGTAGAGCTGATGCCTCATGAGAACACCTGTAAGCCCTGCCCTGTGGTTGCTGCCTCCCCTGTGTGTGGTACGGATAAACACAACTACGCCTCTCAGtgtaAGTTGGAGCAGCAGGGCTGTTTAACAGGGAAGGATCTGAGTGTGAAATGCCAGGGCATGTGCCCCTGTGCCACCGCTGCCGCCCCcatcacagagacagaggacaaacACGCAGAGAGCTGTACCGGGCAGGACCTGGCAGACCTTGGAGACCGCCTCAGAGACTGGTTCCAACTGCTCCATGGAAACGCCAAGCAGAACAACTCAGGCAAGCCTGGACCTGGCACCGCCTcagTCCTGGACAAGAGCCTGGTGGCCAGCTGTAAGGATTCCATAGGCTGGATGTTCTCGAAGCTGGATACTAATACTGACCTGTATCTGGACCAGGCCGAGCTGGCAGCTATCAACCTGGACAAGTATGAGGTGTGCATCCGCCCCTTCTTCAACTCCTGTGACGGCTACAAGGATGGGAGGGTATCCACCGCAGAGTGGTGCCTCTGCTTCTGGAGGGAAAAGCCCGCTTGTCTGGCTGAACTAGAGAGGATCCAGGTTCAACAAGTGGCCAAGAAGAAGCCTGgCATGTACATCCCCAGCTGCGATGAGGACGGCTACTACAGGCAGCTGCAGTGTGACCAGAGCATGGGAGAGTGTTGGTGTGTTGACCAGCACGGAGGAGAAATTATGGGCTCTAGAATCCATGGCAACCCTGACTGTGATGAACTGCTGGGATATTCCGGAGATTTTGGGAGTGGCGTGGGatgggaggatgaggaagagaaggaggagaacggagaagaggcggaggaggaggaagaggaagagggggaggcagaCGACGGAGGATACATCTGGTAGAAACTGAACCCAAACGGAGAACTTGGTCAGGATGGATCCACTGGCCTACAACTACAGGGATGATGGCTgaggcttgcatcccaaatggcaccctattccctatgtagtgcactacttttgaccaggtctcATAGGGACACCCATAGGGGgtctgtcaaaagtagtgcactatatagggaatagggtgtcacttgGGATGCAAGCATCTTTTTCTCCTAACAGCAAAAGATTTGGGGATTTCGGGGCATGGAATTCTGTCTCTATTGTCGACGTGTGGATCTGGGGagtgggaggtggggggggggggggggggggggggtacagtggTGAGATTGCTAGTTTTTGTCTTAAATATGTGAATTATTGCTTCATTCTTTTCTGTTTTGTAAGCAAGAGAGCGTTCTGTTTCACCATAGAGAACTATCATCTGATAATCTGGCCATCAAAATGTTACTGTCAGAAATGCATCTAGTATCATACATTTATGTTCCATTGTGAACAATTGCTTGAATATTGAAATCGCAGATCTGCTAAAAATGGAACGGATTGAGACCTGAGACGGTGGGAAAGGGTTCACTATTTACCTGGTTGTGTTGTCAAAATCAGAGTTGCTGCGTATATAAATCCTGTAGCTATGATCTATGAAGCAGGACAACGAGACTAGACTACTCTATATCCCAAATGGAACActcttccctttatagtgtacaGCTTTTTAATCAGGGCCCATAAAGCTCTGGTCTGAAGTCGTGCACTATGCAGGGATTAGGGAGCCACTTGGGATGCAAGCCTCTCTTTTAGAGGGTGATTCCACTACTGagagaaattattatttttctctTAAAGGTTTCTTAACGGAGCATATTTCTCGGTTCgatctttatttaaaaaaaaattgtatttcacctttatttaaccaggtaggctagttgagaacaagttcttgaCGCGGATGTCGTCAAAGTAATGTTGCTCATTGGATCATTTGTGAAAATGACCGTGTTTTCGTGCATTATGTAGGTAAATTCAGGACTGACAAACAGGCTTGTTATGAAGGAAGGCTTTTGTGCTACTTTATTGCTAAAAGGAATACTGATGTACACGGCTCTCGGCGGTTTATAAACCtttaaaatactatatatatatcgATTAACATAGACACAATAACTACTAATATCTCTTATGAAACTGCTATGGGAACTTTGTTACTTATTGAGTTATTTCAACTCAAAACTTGTAGAATGTATATTACTTGTCCCATCAACCTACACCACCAAGGGtaacatcccaaatgacaccctatgccctatatagtgcactactttctatccAGGGCTCATACAGActctctggtccaaagtagtgtactatatagggaatggtatTCCATTTGGGATGATGCAGACACTACCTTATCCAATGGGAACTCTGTAAATCACTTCAAAGAATGGTGTCAGTCGATGTTCTATTCTCAGTCTTTATTTTGGTGTTCATAAAACAACGCGTATATGCTACTTGAAGTTCTGTGTGTATACTTGAAATCTCACCGTTAGATGGTTTATCTACGAGTATATCGTTGCCATTATTATTCCATCACTTCAGTTGTTTTTAGTATGTGGCATGTTATAGTGAACATGAATGTACTTCTCCTAGGCTGAGCACTTTACTATTAAAGGCATTGGGGCCCCCAAAAAACC
>TU2091649
TAGAGGACAGGATAAGATATAGCGGCTACTAAAACAGCAACACAAATATGGTCGGGATGAGAGATGTGGTTTGCCTCCTGCTGCCAGCCGTCGTGCTGTTCGGCACATCGATGCAGGTGGAAGTGAAAggtgggaaagagggagaaaaagcaGGGAATTTCATGGAAGATAAGCAATGGCTATCAACCATTTCTCAGTACAGCCGGAAGATCAAACACTGGAATCGCTTCAGAGACGAAGTTGAGGATGACTACATCAGGAATGTGGAGGAAACCCCAGTATCGGATGAAActGTGGACACCACCAAGGATCCGTGTCAGAAGGTGAAGTGTAGCCGCCACAAGATCTGTGTTACCCAGGGTTACCAGAGAGCAACGTGTGTCAATGTCAACCGGAAGAAGCTGGAGCACAGAAGCAGACAGCCTGTAGAGCTGATGCCTCATGAGAACACCTGTAAGCCCTGCCCTGTGGTTGCTGCCTCCCCTGTGTGTGGTACGGATAAACACAACTACGCCTCTCAGtgtaAGTTGGAGCAGCAGGGCTGTTTAACAGGGAAGGATCTGAGTGTGAAATGCCAGGGCATGTGCCCCTGTGCCACCGCTGCCGCCCCcatcacagagacagaggacaaacACGGCAAGTACACACGCACAAACTCGCACGcagtgtgtgttgttctgtcagtgtgtgttgttctgtcagtgtgtgttgttctgtca
>TU2091643
CTGAGCTGTAAGGTGAGGAAGCCAAGCTGTACTGTAGCTATCTACCCTGGCTATATCAAAACAGACCACAGCACAGAATGGAGAGGTCCATACTATCCCCTAGCTGTGTGGACCATCTCATTCCAATTCCTCACTGACCAGTGATCGATGCaaggacattttttttatttatttttttatttcacctttatttaaccaggtaggctagttgagaacaagttcttgaCGCGGATGTCGTCAAAGTAATGTTGCTCATTGGATCATTTGTGAAAATGACCGTGTTTTCGTGCATTATGTAGGTAAATTCAGGACTGACAAACAGGCTTGTTATGAAGGAAGGCTTTTGTGCTACTTTATTGCTAAAAGGAATACTGATGTACACGGCTCTCGGCGGTTTATAAACCtttaaaatactatatatatatcgATTAACATAGACACAATAACTACTAATATCTCTTATGAAACTGCTATGGGAACTTTGTTACTTATTGAGTTATTTCAACTCAAAACTTGTAGAATGTATATTACTTGTCCCATCAACCTACACCACCAAGGGtaacatcccaaatgacacccta
>TU2091644
CTGAGCTGTAAGGTGAGGAAGCCAAGCTGTACTGTAGCTATCTACCCTGGCTATATCAAAACAGACCACAGCACAGAATGGAGAGGTCCATACTATCCCCTAGCTGTGTGGACCATCTCATTCCAATTCCTCACTGACCAGTGATCGATGCaaggacattttttttatttatttttttatttcacctttatttaaccaggtaggctagttgagaacaagttcttgaCGCGGATGTCGTCAAAGTAATGTTGCTCATTGGATCATTTGTGAAAATGACCGTGTTTTCGTGCATTATGTAGGTAAATTCAGGACTGACAAACAGGCTTGTTATGAAGGAAGGCTTTTGTGCTACTTTATTGCTAAAAGGAATACTGATGTACACGGCTCTCGGCGGTTTATAAACCtttaaaatactatatatatatcgATTAACATAGACACAATAACTACTAATATCTCTTATGAAACTGCTATGGGAACTTTGTTACTTATTGAGTTATTTCAACTCAAAACTTGTAGAATGTATATTACTTGTCCCATCAACCTACACCACCAAGGGtaacatcccaaatgacaccctatgccctatatagtgcactactttctatccAGGGCTCATACAGActctctggtccaaagtagtgtactatatagggaatggtatTCCATTTGGGATGATGCAGACACTACCTTATCCAATGGGAACTCTGTAAATCACTTCAAAGAATGGTGTCAGTCGATGTTCTATTCTCAGTCTTTATTTTGGTGTTCATAAAACAACGCGTATATGCTACTTGAAGTTCTGTGTGTATACTTGAAATCTCACCGTTAGATGGTTTATCTACGAGTATATCGTTGCCATTATTATTCCATCACTTCAGTTGTTTTTAGTATGTGGCATGTTATAGTGAACATGAATGTACTTCTCCTAGGCTGAGCACTTTACTATTAAAGGCATTGGGGCCCCCAAAAAA

Function

symbol description
spock2 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Is expressed in brain and peripheral olfactory organ. Orthologous to human SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959871.1 False 3120 mRNA 0.47 12 8165316 8278334
XM_036959870.1 False 3121 mRNA 0.47 12 8165318 8278334
TU2091649 False 719 TUCP 0.51 6 8165423 8236526
TU2091643 False 581 lncRNA 0.38 2 8209430 8277939
TU2091644 True 974 lncRNA 0.38 2 8209430 8278332
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118943830 LOC106592879 coding upstream 11145 8104260 ~ 8154171 (+)
LOC110515096 djb12 coding upstream 84475 8065011 ~ 8080841 (+)
LOC110513904 LOC106597856 coding upstream 109907 8025503 ~ 8055409 (+)
sec31b LOC106577393 coding upstream 142295 7999800 ~ 8023021 (+)
LOC118943823 NA coding upstream 148421 8015027 ~ 8016895 (+)
LOC110516810 pald1 coding downstream 42542 8320876 ~ 8481303 (+)
LOC110513446 LOC106577352 coding downstream 229688 8508022 ~ 8654135 (+)
LOC118943826 LOC106577384 coding downstream 437581 8715915 ~ 8728661 (+)
LOC110531721 LOC106595486 coding downstream 551871 8829711 ~ 8904592 (+)
LOC110517148 LOC106564289 coding downstream 596883 8875217 ~ 8898772 (+)
G1826459 NA non-coding upstream 5340 8159716 ~ 8159976 (+)
G1826456 NA non-coding upstream 13562 8149890 ~ 8151754 (+)
G1826439 NA non-coding upstream 52922 8111754 ~ 8112394 (+)
G1826425 NA non-coding upstream 78802 8085305 ~ 8086514 (+)
G1826421 NA non-coding upstream 81687 8083219 ~ 8083629 (+)
G1826505 NA non-coding downstream 18489 8296823 ~ 8299342 (+)
G1826506 NA non-coding downstream 21830 8300164 ~ 8301135 (+)
G1826508 NA non-coding downstream 23493 8301827 ~ 8302694 (+)
G1826509 NA non-coding downstream 25141 8303475 ~ 8304246 (+)
G1826512 NA non-coding downstream 35441 8313775 ~ 8314068 (+)
G1826455 NA other upstream 23640 8139581 ~ 8141676 (+)
G1826407 NA other upstream 144402 8020361 ~ 8020914 (+)
G1825869 NA other upstream 928414 7236454 ~ 7236902 (+)
G1825399 LOC106577407 other upstream 1279204 6883963 ~ 6886112 (+)
uros hem4 other upstream 1771116 6376624 ~ 6394234 (+)
G1826761 NA other downstream 260566 8538900 ~ 8539519 (+)
G1827033 NA other downstream 480493 8758683 ~ 8764786 (+)
G1827034 NA other downstream 481046 8759380 ~ 8760274 (+)
G1826471 NA non-coding upstream 34081 8174990 ~ 8175349 (+)
G1826491 NA non-coding downstream 15621 8252147 ~ 8253017 (+)

Expression

LOC110515875(spock2) Expression in all Baseline Samples

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LOC110515875(spock2) Expression in each Bioproject

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LOC110515875(spock2) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network