LOC110515025 (LOC106577347)


Basic Information

Item Value
gene id LOC110515025
gene name LOC106577347
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 8276732 ~ 8289116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959872.1
CCCGAAGTCACGTCGAAGAACAATACAATCAGCTGTTCGTTGATCGAATCCGCAAAAACAGTCTAACCAAAGCTGTCATTGTCGACAGGCAAAGACCAGTGAAATGTCATTCCTCTTTGATTGGCTCTACAGAGGCTTTAGTGGTGTGCTACAGTTTTTAGGTTTGTACAAAAAATCTGGAAAGTTGGTTTTCCTGGGGTTGGATAATGCTGGTAAAACAACCCTTCTGCATATGCTGAAAGATGACCGACTTGGACAGCATGTGCCCACGTTGCATCCAACATCGGAAGAGTTGACGATAGCTGGAATGACATTCACTACGTTTGATCTGGGCGGCCACGTACAAGCTAGAAGAGTTTGGAAGAACTACCTGCCGGCTATCAATGGAGTTGTCTTTCTGGTTGACTGTGCCGACCACGACCGCCTTACAGAATCCAAGATCGAACTTGATgctcTGTTAGCAGATGAGACCATCCTCTCTGTGCCTGTGCTGGTCCTGGGTAACAAGATAGACCGTCCTGAAGCCATCAGTGAAGGGGGACTGAGAGAGGCGTTCGTTCTCGATGGACAATGCACTGGAAAGGGTAACGTGTCGTTGAAGGATCTGCAGGCACGACCTCTGGAGATTTTCATGTGCAGTGTCCTGAAGAAGCAGGGCTATGGAGATGGCTTCAGGTGGCTGGCACAATACATCGACTGACATCTAGGCAGCGGTTCTTTTACTAAACGGACTCCCATCTTTCTGGGGGGAATGAAGAGGATAAGCTATCAAATGAAATGGCCCatatcgtccccccccccccccaaccccatgTGGAAAGATGTGAAGCTCCCAATAATCAGCTTTCTGATTGAGTACATCTGTCAATTTCAGCATTAATTGGTCAGTTTTAAAGGTTTCTATCTATGCAAACTTTTAAAAGTGGTTCATGGTCACAAGATTCAAGATGGGTTTGCGTGTAAGTCCATTAGTTAAGTATAACGTCGACCCGTTCTCTGGCATGTAAAATTAGAGTATCCGATTCTACCCCAACAGATTTGATCATAGCTGCAATTCAAGCTACAGTATACGGCAGATGTACCAATGTAGAACCTTTTATAAGGTATACTGTGAACTTTTTAAAttatttctgaaaaatgaaggacCAAGCGATTTTTAAATGAAATAGATTATAAATGATAAGGATATTTATGTGAATGGTGGCGGTACAAATGCTTGTACATAGCAGTCCTACCTAGAATAAGATGTTCTTATCACTAAGAGGACATGAAAGAGGATAGATAGACTGAGCAGGATTATTCCAACAGACCCAAGTTCCAATCGCATCGAATAGAACGTCATCTAAAGTTTAGGGGCGGAGTCCATTTGACCTGATTCTGTTTCTATACATGGCGTGTATATCCCAAATGGCAGCATATtgactatatagtgcactacttcagagaACCCATACTTTCTATGCCCCCcctacaaaagtagtgcactaaatagggaatagggtgccaaccctgatcaaaagtagtgcactaaataggaaatagggtgcca
>TU2091898
cccccccaaccccatgTGGAAAGATGTGAAGCTCCCAATAATCAGCTTTCTGATTGAGTACATCTGTCAATTTCAGCATTAATTGGTCAGTTTTAAAGGTTTCTATCTATGCAAACTTTTAAAAGTGGTTCATGGTCACAAGATTCAAGATGGGTTTGCGTGTAAGTCCATTAGTTAAGTATAACGTCGACCCGTTCTCTGGCATGTAAAATTAGAGTATCCGATTCTACCCCAACAGATTTGATCATAGCTGCAATTCAAGCTACAGTATACGGCAGATGTACCAATGTAGAACCTTTTATAAGGTATACTGTGAACTTTTTAAAttatttctgaaaaatgaaggacCAAGCGATTTTTAAATGAAATAGATTATAAATGATAAGGATATTTATGTGAATGGTGGCGGTACAAATGCTTGTACATAGCAGTCCTACCTAGAATAAGATGTTCTTATCACTAAGAGGACATGAAAGAGGATAGATAGACTGAGCAGGATTATTCCAACAGACCCAAGTTCCAATCGCATCGAATAGAACGTCATCTAAAGTTTAGGGGCGGAGTCCATTTGACCTGATTCTGTTTCTATACATGGCGTGTATATCCCAAATGGCAGCATATtgactatatagtgcactacttcagagaACCCATACTTTCTATGCCCCCcctggtcaaaagtagtgcactacatagggaat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959872.1 False 1549 mRNA 0.44 7 8283147 8289116
TU2091898 True 701 lncRNA 0.39 2 8276732 8283897

Neighbor

gene id symbol gene type direction distance location
cj104 cj104 coding downstream 178990 8099308 ~ 8104167 (-)
LOC110531799 LOC106577395 coding downstream 193235 8081754 ~ 8089912 (-)
LOC110531557 fbx37 coding downstream 303339 7974919 ~ 7979808 (-)
LOC118943880 gpr26 coding downstream 873786 7397159 ~ 7409361 (-)
LOC110518105 LOC106592890 coding downstream 1381958 6885354 ~ 6901189 (-)
LOC118943919 LOC106560865 coding upstream 1354 8290470 ~ 8303415 (-)
LOC118936473 LOC106594692 coding upstream 14329 8303445 ~ 8314375 (-)
LOC110515815 LOC106594691 coding upstream 26506 8315622 ~ 8319738 (-)
star2 LOC106577426 coding upstream 376293 8665409 ~ 8677018 (-)
LOC118943825 polr3a coding upstream 446947 8736063 ~ 8813113 (-)
G1826632 NA non-coding downstream 37730 8245110 ~ 8245417 (-)
G1826573 NA non-coding downstream 124652 8104293 ~ 8158495 (-)
G1826599 NA non-coding downstream 127742 8153861 ~ 8155405 (-)
G1826598 NA non-coding downstream 129532 8153173 ~ 8153615 (-)
G1826655 NA non-coding upstream 4619 8293735 ~ 8294173 (-)
G1826653 NA non-coding upstream 12752 8301868 ~ 8302358 (-)
G1826659 NA non-coding upstream 18548 8307664 ~ 8312699 (-)
G1826594 NA other downstream 136143 8143183 ~ 8147004 (-)
G1826369 NA other downstream 322323 7959839 ~ 7960824 (-)
G1826079 NA other downstream 698170 7584564 ~ 7584977 (-)
G1825645 LOC106593297 other downstream 1355803 6926852 ~ 6943944 (-)
G1825658 NA other downstream 1457329 6823168 ~ 6825818 (-)
G1827228 NA other upstream 553486 8842602 ~ 8948639 (-)
LOC110532987 LOC106596646 other upstream 561817 8838876 ~ 8945963 (-)
jakmip3 LOC106577179 other upstream 823441 9049200 ~ 9133856 (-)
G1827339 NA other upstream 870081 9159197 ~ 9159615 (-)
LOC110512783 tcerg1l other upstream 1124829 9406037 ~ 9611812 (-)

Expression


Co-expression Network