LOC118943919 (LOC106560865)


Basic Information

Item Value
gene id LOC118943919
gene name LOC106560865
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 8290470 ~ 8303415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960840.1
TTGCTTGCTAAATGTAGTCTATATAGTTTGGTTGATTGTTACACGACCCGTTGTGTGGAAATGTagattgatttattttttaagttGGAGACATTCATAAGAGGGATGATGAACCAAGGCCAAATTCAAGGCAGTACAGGAAGTACGCCCACTAGCAGCAGTACCAAGAAGCAGACTGAACAAAATAAGGCAGTAGACATGAGCTTCACCATCGAGGAGAGGGGCAAGcccaacacactggactacaGGGTGTTCTTCAGAAATACTGAGGGAAAACACGTCTCTCCATTCCATGACATACCAATTTATGCAGATGaagctcagAACATCTTCCATGCTGTTGTTGAGGTACCCAGATGGACCAACGCaaagatggagATTGCCACCAAAGACCCTCTAAATCCATTGAAGCAAGACATCAAGAAGGGGAACCTTCGTTATGTGGCCAACGTGTTTCCACACAAAGGATACATCTGGAACTATGGAGCCATCCCTCAGACATGGGAGGACCCGGGCCATAAAGACGCAGATACAGGATGCTGTGGTGACAATGACCCTATTGACATCTGTGACATAGGATACAAGGTGTGCTCTCGTGGAGAGGTGATTAAAGTCAAGGTGTTGGGCACTCTGGCTCTGATCGACGAAGGAGAAACAGACTGGAAAGTCATTGTCATCAACATGGAGGATCCAGAGGCCAACAACTTTAACAATATTGATGACGTAAGAAGACTCAAGCCTGGGTATCTGGAAGCTACATTTGAGTGGTTCAAAAAATATAAAGTTCCCGATGGAAAACCTGAGAACCAGTTTGCATTTAACGGAGAGTTCAAGGACAGGGACTTTGCTCTTAAGACAGTCAAGGAAACTCATGAGTTTTGGAAGTCGCTGATCTCCAAAAAGACCAACGCTGGAGAACTGAACTGTACCAACACCTGTGTCACAGACAGTCCATTCTGCTGTTCCACTACTGATGCTAAGGCTGTTGTTGATGCCGTGAGTTCCTTTCACTTATTTGGCTTATCCTACTAA

Function

NR:

description
inorganic pyrophosphatase-like isoform X1

GO: NA

KEGG:

id description
K11726 NURF38; nucleosome-remodeling factor 38 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960840.1 True 1032 mRNA 0.45 10 8290470 8303415

Neighbor

gene id symbol gene type direction distance location
LOC110515025 LOC106577347 coding downstream 1354 8276732 ~ 8289116 (-)
cj104 cj104 coding downstream 186313 8099308 ~ 8104167 (-)
LOC110531799 LOC106577395 coding downstream 200558 8081754 ~ 8089912 (-)
LOC110531557 fbx37 coding downstream 310662 7974919 ~ 7979808 (-)
LOC118943880 gpr26 coding downstream 881109 7397159 ~ 7409361 (-)
LOC118936473 LOC106594692 coding upstream 30 8303445 ~ 8314375 (-)
LOC110515815 LOC106594691 coding upstream 12207 8315622 ~ 8319738 (-)
star2 LOC106577426 coding upstream 361994 8665409 ~ 8677018 (-)
LOC118943825 polr3a coding upstream 432648 8736063 ~ 8813113 (-)
LOC110532987 LOC106596646 coding upstream 547421 8838876 ~ 8945963 (-)
G1826632 NA non-coding downstream 45053 8245110 ~ 8245417 (-)
G1826573 NA non-coding downstream 131975 8104293 ~ 8158495 (-)
G1826599 NA non-coding downstream 135065 8153861 ~ 8155405 (-)
G1826598 NA non-coding downstream 136855 8153173 ~ 8153615 (-)
G1826659 NA non-coding upstream 4249 8307664 ~ 8312699 (-)
G1826832 NA non-coding upstream 50973 8354388 ~ 8354773 (-)
G1826883 NA non-coding upstream 134566 8437981 ~ 8438349 (-)
G1826594 NA other downstream 143466 8143183 ~ 8147004 (-)
G1826369 NA other downstream 329646 7959839 ~ 7960824 (-)
G1826079 NA other downstream 705493 7584564 ~ 7584977 (-)
G1825645 LOC106593297 other downstream 1363126 6926852 ~ 6943944 (-)
G1825658 NA other downstream 1464652 6823168 ~ 6825818 (-)
G1827228 NA other upstream 539187 8842602 ~ 8948639 (-)
jakmip3 LOC106577179 other upstream 809142 9049200 ~ 9133856 (-)
G1827339 NA other upstream 855782 9159197 ~ 9159615 (-)
LOC110512783 tcerg1l other upstream 1110530 9406037 ~ 9611812 (-)

Expression


Co-expression Network