XLOC_037368 (nemp2)


Basic Information

Item Value
gene id XLOC_037368
gene name nemp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41459759 ~ 41481650 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073530
GACTGCGGCTTAAGACCTGACTAGTCAAACGCTAAACGGCCATGCTAACTTTATCAAGCATAGTCAAGCGTCCAAATAGGCTTTAAACGTGATCACTGATGCATCTTAGTTGttttataacaaaatattaaaacatcTACACATTATGTTTAAGTAACTTCAAAAGCGAAACCGATCATTCACTCCGATACTGTTAGTCAGGTCTGGGTTACCCGAAGCCCACCGAATTTGAAACCGAAAACATTAGCTTAGCTCATGTTAGCTTAGCAGGCCAATCATTAACCTACCTAGTCTGTCTAATTCATCCATTTAAAACAAAACGTAACAAAACATGGAGAAACTGGCTGCTTTTATACTCGTTTTAACTCTACTGTGCGCTTACTGGCAAAGCGCTGAAGGAATCAGAGAATACTCATACGCAGATTGCACCGATGTGAAAGGAGACAGTGCACACAGGTATTCTGGGAGTCGATGCTTCTGTTACAGCCCTGGTACAGTAATCAAATGGAAGGACATCTGGTCCACCTTCAAGGTAAACGTGTCAAGCAATGTGGACGTTGTTGTTGTGTTCCCAATGGAGACTATAAATTGCCACCATCCGGATGATCTTCTGACGGTTATGAACTGCTTTGTTGAACACTACTGGCCATCCACTGTCCAAAGGGAGACGTCTTTAGAGATTCCTCTGGTTGATGTTGATATCTGCTTCATGATCAAATCGCCTAGAAGCAATACTGAGTACACACTACACGTCTCCAACAAAAGGTTAAACAGAATGTGTTTCCTGCTTTTCGTGTGTGGGCTGATACTGTTTTTTGGAGCCAGAAACATATGCAGGAGCTCACTGTTTTTTTACACCACCGGGGTTTCGCTAGGAATCATTGCCACATTTGTCTTCCTCACGCTCTTGCTCCGCAACTTCGTACCAAAGCGAGGGCTGTTCCTTGTGCTGCTG
>TCONS_00073531
GACCTGACTAGTCAAACGCTAAACGGCCATGCTAACTTTATCAAGCATAGTCAAGCGTCCAAATAGGCTTTAAACGTGATCACTGATGCATCTTAGTTGttttataacaaaatattaaaacatcTACACATTATGTTTAAGTAACTTCAAAAGCGAAACCGATCATTCACTCCGATACTGTTAGTCAGGTCTGGGTTACCCGAAGCCCACCGAATTTGAAACCGAAAACATTAGCTTAGCTCATGTTAGCTTAGCAGGCCAATCATTAACCTACCTAGTCTGTCTAATTCATCCATTTAAAACAAAACGTAACAAAACATGGAGAAACTGGCTGCTTTTATACTCGTTTTAACTCTACTGTGCGCTTACTGGCAAAGCGCTGAAGGAATCAGAGAATACTCATACGCAGATTGCACCGATGTGAAAGGAGACAGTGCACACAGGTATTCTGGGAGTCGATGCTTCTGTTACAGCCCTGGTACAGTAATCAAATGGAAGGACATCTGGTCCACCTTCAAGGTAAACGTGTCAAGCAATGTGGACGTTGTTGTTGTGTTCCCAATGGAGACTATAAATTGCCACCATCCGGATGATCTTCTGACGGTTATGAACTGCTTTGTTGAACACTACTGGCCATCCACTGTCCAAAGGGAGACGTCTTTAGAGATTCCTCTGGTTGATGTTGATATCTGCTTCATGATCAAATCGCCTAGAAGCAATACTGAGTACACACTACACGTCTCCAACAAAAGGTTAAACAGAATGTGTTTCCTGCTTTTCGTGTGTGGGCTGATACTGTTTTTTGGAGCCAGAAACATATGCAGGAGCTCACTGTTTTTTTACACCACCGGGGTTTCGCTAGGAATCATTGCCACATTTGTCTTCCTCACGCTCTTGCTCCGCAACTTCGTACCAAAGCGAGGGCTGTTCCTTGTGCTGCTGGGCGCTGGCTCCGGTCTGTCCTACATGGGGATCCAGAGGGTGTTAAATGAATGGGACGACATCGTGACTGAGCACTGGATGGAATTACTGGCTTATGTGCTGATATCGGGTTTATTTAGCTTTGCCGTGTGCTATAAACACGGTCCCATCACCAACAAACACACCCTCAACTTCATGACCTGCTCGATGCAAGCAGTAGGCATAGTGTTGCTTTACTACGGGATCACATTCCCTCCTGCTTACTTTGTACTTGTCGCTGTCCTGTTGTGCTGGAAGATTCTGCCCTTGGCCTGGAGCCTTCTGATGGGGATTTGCAGTCTCTTCTACTCTTTCCTGGCTTTATTCCGGAGGAGGAGACGGCCCACTGTAAGGCTGCTGACTGAGGAAGAGTACAGAGAGCAGGGAGAGATCCACACCAGAGCCTCTCTGGATGAGCTGCGGGAATACTGTAACAGACCTGGCTTTCCTGCATGGGAAACAGTGCTGAGGCTCAGATCCCCACAAagGTTTGCAGAGTTTCTCCGTCAAGGCAGTCACATCACTCAAGAGGAGCATCAGAACCATGAGAATCATTACGGCCTTGGCGGTGCCTATTATGAGAATGTGATCTTCAACAACAGCAGCTCCAGCGACACTCAGTCACACAGAGAAGAAGCAGAGGACAATAGTGAAGACGAGATAGTTGGAAACAGTCCTCCAGTCCTAAATAACCTCCCCAGTCCAACTATATACCCTCCAACCATCTGTCCATATCCTCCTGTCACCTACACCCCTCAGCCAGAACCCCTGGATCCAGAAGACCAGGACTTCTTTTGA
>TCONS_00073532
CTTATGTGCTGATATCGGGTTTATTTAGCTTTGCCGTGTGCTATAAACACGGTCCCATCACCAACAAACACACCCTCAACTTCATGACCTGCTCGATGCAAGCAGTAGGCATAGTGTTGCTTTACTACGGGATCACATTCCCTCCTGCTTACTTTGTACTTGTCGCTGTCCTGTTGTGCTGGAAGATTCTGCCCTTGGCCTGGAGCCTTCTGATGGGGATTTGCAGTCTCTTCTACTCTTTCCTGGCTTTATTCCGGAGGAGGAGACGGCCCACTGTAAGGCTGCTGACTGAGGAAGAGTACAGAGAGCAGGGAGAGATCCACACCAGAGCCTCTCTGGATGAGCTGCGGGAATACTGTAACAGACCTGGCTTTCCTGCATGGGAAACAGTGCTGAGGCTCAGATCCCCACAAagGTTTGCAGAGTTTCTCCGTCAAGGCAGTCACATCACTCAAGAGGAGCATCAGAACCATGAGAATCATTACGGCCTTGGCGGTGCCTATTATGAGAATGTGATCTTCAACAACAGCAGCTCCAGCGACACTCAGTCACACAGAGAAGAAGCAGAGGACAATAGTGAAGACGAGATAGTTGGAAACAGTCCTCCAGTCCTAAATAACCTCCCCAGTCCAACTATATACCCTCCAACCATCTGTCCATATCCTCCTGTCACCTACACCCCTCAGCCAGAACCCCTGGATCCAGAAGACCAGGACTTCTTTTGAAACTCAGCCAGGATAAGTcattttatgcttattttaaagaGACACTTTAAATTGCACAATATTATAAGGAAGAAATGACTCTAAGGAACATTAGCAGGTCTATAAGGATTGTAAAAATctcttgtttgtgtgttttaatgaTCTCTTTCTGCCAGCGTGGgctgttattatatatatttttaagttcttATACCCGAGTGATGCAGAGCTGGGAGTAAAGTAACAGCGTATTGTACATATTGTATGCTAATAGTGTGTGAGCAGATGGTGACTCTCAGGTATACAAGCTCATCATTTCAGTCAATAATCTTTTTCCTCAACTGTTCCAGAGCAGTGTTTtccaaccctattcctggaggcacaccaacaacatatgttttggatgtcttccttatctgacccattaacttctGGTTTTgaagttgattcaggtgtgtttgattagggaaaggttgaaaatgtgtactgttggtgtgccttctgAAACAGGCTTGGGAAACACTGTACTAGAGAATGACTGGACATGTAGAATCATGTGGTGTAATTTAAGTAAATCATGCCCTCTAGTGTTGGCTCagctaaaaaaaatctaaatctgtgTGGCGTTCTGTCTTAAGTGGAGCACAGAAGTAGACGTTCAGTAAAATCTCCAAGCTGCTCGATATTTTAGAACTATACTATGTGGCTTATGAGCATTTGTGCGTACTATTTTAATTCTTCTCATGACATTTGATAGAAAACAAGGTCCCTATTCAGCAGAACGCATCATTGCCTTGATATAATATGGATCTGTTACTCACAAAGAAACTTTttaggggctctttaaacaaaTCACGGTGTGTTTGACTTGCACTGGCTGGTGTCTTGAACGTGGCATTGTTCTAAAAGGGCTAAAGTTAGAATAACgagtttttaaaaacatgtctGGAGGTGTTTTTTGTCTATTTGACAGCTTACGTCGTATGTTTGTTCAACGCATTATTGATTGTGGGGCCTTTCACACTTTCTTTACACCATCTTTATGCTGATGTTTGGCCATTGTGCTCTTTTTCTGGCACATTTTGCACTGCTGTTTGACATGGTGTTTTGTAAGcagtgtttaaagggatagttcacccaaaaatgaaaattctttggTCCCCCAACAGTTTTGATGTTTTAATGACCTTCCTGGTCtctgcattaaaaaatatatatatacaaaataaatatatacaaaaaaattaagaaaaataacacattgtttttacaataaaatagctCCTGCTAGCAAAAGAATTTAGTATGAGTCCTTATACCAGACCTATCTTCCATCTTctgatttatgtgtttttttctgcttttttcccCTCTGTCCAGGCAACCCCTTACTGCCTCTATAATACTACTGTATAttaaggtctggactctgtgcaggccatttcatgactgttttagctgtttttgtcGATAAATATATCATCAATATCTATAATCCTTCACATTTCCAGATCTGTTtgggtttttttcttctgttgaacacagaggaGGATATACTGAAAGATGTTGCtataaaaacagccattgacttccgtagtattttAGTTTTATTGGTTTTACTATGCATGTCAAAGGCTGCTTTTTTACAGCTTTCTTCGgattatcttgttttgtgttcaatagaagaaagacaAGCataaaagatacataaaactACTTGAGAGTATATTTGAATTTGGGGTGAACAATCTCTTTTAATAATACTTTTGACTATTATTGTACTTGCTTTGACCTAGTctttttaagtgcaaaaaagatgtcttgtgtgtctgtgtgtgtgtgacttaaaAAACTTGATTATAGCGTGTAATTTGGGCTATGAGTAACTTTGGAAGTcccaaatatgtttttaataacatttcacaaaGCCACTGAAGGAATTATTCTCACTTTTTCTGTGTCCTACCAACAACTGTTGTGCTCACTTGCAAATAGTTTGTTTCCAAGAGAAGCTTTGGATTACTATGGACGTTTTTGGGgccaaaagtttttaaaataaagttgtgAACTGGATCATGCTGTTTGACATTGTGTTTATAGTATACTGTTATGTTGacctacataaataaacacatctTGTTTTCATATA
>TCONS_00073533
GGCAGATAAAATGGTTGTTTCAGAGGTAAAAATCATGTTTGCCAGTTAATTCTTAGGTTAGAAATGTGTAGCATTGGCAGTTTGATTTGTGACCACTGAAAGGGGCTGTATGAGAATCCAGAGAAACTCAACATTTGCAAATGGTCTCTTAGCTTACTCTATCGCTTCTATCTGAAATGTTTGTATGTATTAAGTGACTCTTTCTGCCTTCAGTCTCTTCTACTCTTTCCTGGCTTTATTCCGGAGGAGGAGACGGCCCACTGTAAGGCTGCTGACTGAGGAAGAGTACAGAGAGCAGGGAGAGATCCACACCAGAGCCTCTCTGGATGAGCTGCGGGAATACTGTAACAGACCTGGCTTTCCTGCATGGGAAACAGTGCTGAGGCTCAGATCCCCACAAagGTTTGCAGAGTTTCTCCGTCAAGGCAGTCACATCACTCAAGAGGAGCATCAGAACCATGAGAATCATTACGGCCTTGGCGGTGCCTATTATGAGAATGTGATCTTCAACAACAGCAGCTCCAGCGACACTCAGTCACACAGAGAAGAAGCAGAGGACAATAGTGAAGACGAGAT

Function

symbol description
nemp2 Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear envelope. Orthologous to human NEMP2 (nuclear envelope integral membrane protein 2).

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-413 Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear envelope. Orthologous to human NEMP2 (nuclear envelope integral membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000061062

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073530 False 955 mRNA 0.43 6 41459759 41470408
TCONS_00073531 False 1758 mRNA 0.47 9 41459772 41479522
TCONS_00073532 False 2853 mRNA 0.39 3 41474623 41481650
TCONS_00073533 True 576 lncRNA 0.46 2 41474942 41479386

Neighbor

gene id symbol gene type direction distance location
XLOC_037367 BX649377.1 coding upstream 192916 41249457 ~ 41266843 (+)
XLOC_037366 stat1b coding upstream 212562 41218967 ~ 41247197 (+)
XLOC_037365 stat4 coding upstream 251416 41156287 ~ 41208343 (+)
XLOC_037364 slc40a1 coding upstream 345881 41103127 ~ 41113878 (+)
XLOC_037363 zgc:136439 coding upstream 376578 41080029 ~ 41083181 (+)
XLOC_037369 BX571827.3 coding downstream 28298 41509948 ~ 41598827 (+)
XLOC_037370 BX571827.2 coding downstream 111846 41593496 ~ 41593610 (+)
XLOC_037371 spegb coding downstream 130992 41612642 ~ 41681053 (+)
XLOC_037372 dre-mir-732 coding downstream 201276 41682926 ~ 41683010 (+)
XLOC_037373 ctdsp1 coding downstream 208503 41690153 ~ 41741420 (+)
XLOC_037359 BX323586.1 non-coding upstream 562576 40895649 ~ 40897183 (+)
XLOC_037355 BX936447.2 non-coding upstream 1181496 40278147 ~ 40278263 (+)
XLOC_037354 BX255912.2 non-coding upstream 1322147 40137497 ~ 40137612 (+)
XLOC_037353 NA non-coding upstream 1594087 39863253 ~ 39865672 (+)
XLOC_037374 dre-mir-26a-1 non-coding downstream 251883 41733533 ~ 41733610 (+)
XLOC_037375 BX927363.1 non-coding downstream 306567 41788217 ~ 41806355 (+)

Expression


Co-expression Network