LOC110532987 (LOC106596646)


Basic Information

Item Value
gene id LOC110532987
gene name LOC106596646
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 8838876 ~ 8945963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532987
ACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAACAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTTCAGACACTTCCTTCAAGGACAAGCTGTACGCCCAGCATCTTGGCAAAAACAAGGCGTTTGAGAAGCCCAAGCCTGCCAAAGGCAAGGCAGAGGCCCACTTCTCCCTGGTGCACTATGCCGGCACAGTGGACTACAACATAACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGACTCAGTTCTTCAGCTGTACGGGAAGTCTTCAGTCAAACTGATGGCTACACTGTATGTCGCTGCCCCACCTGAGGATACAACCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGACCTCCCAGTTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTACGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAGGGTATCAGGATCTGCaggaagggcttccccagtagaATCATCTATGCTGACTGCAagcagagGTACAAAGTACTGAATGCCAGTGTCATCCCCGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacaaggactacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagatgagaagcTGGCCTCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTCACcaagatgatggagaggagAGATTCCATCTTCACCATCCAGTACAACATCCGTTCATTCATGAATGTGAAAACCTGGCCATGGATGAAGTTGTACTTCAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACTGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGACGTCGGACTTGGCCAAGGCTCTGGCCAAGAAGAAGGAGttggaggagaagatggtagccATGGTGCAGGAGAAGAATGACCTGGCGCTTCAAGTCGCATCTGATTCAGAGAATCTGAACGATGCTGAGGAAAGGTGCGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACTGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGAGTGCTCATAGCTGAAGAAGGACATTGATGACCTGGAGCTCACCTTGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAACTCCGTATGGACCTTGAGAGAGCCAAGAGAACGCTGGAGGGAGATCTGAAACTGTCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACCACCCAGCTCCTCAGCAAGATAGAGGATGAGCAGTCTCTGGGAGCTCAGTTGCAGAAGAAGATTAAGGAACTCcagGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCTAGGGCCAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGACTGGAGGAGGCCGGAGGTGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGTGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCTGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGCTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGTCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagagaCTGATTGAGGAGGAGGTCAAGgctaAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGATCTCCTGAGAGAGCCGTTTGAGGAGGAACAGGAGGCCAAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCCATGGCCGCCAACCAATATTTGAAACTGGTATCATTTCCTATTTATTATTCCTCCAGTGGTGATCTTTTGTTTTGGACAGGCAGACCAGTTGTATAAGTGAAGcatttagag
>TU2092789
CCCTGGACTCCAGTTTCTGGAGCTGCTTCTTGCCTCCCTTCATGGCCAGATTCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTGACTGTGACCTCCaggttcttcttcatcctctccaggtgagagctggtgtcctgctccttcttcagctcagagcactCGTCCTCCAGCTTCCTCTTCTTGGCAGTCAACTCAGCAttcatctcctcctcatcctccagcctCTCAGTCGTCTCTTTGAGTTTGGCCTCCAGCTGGATCTTGCTCTTGATGAGCCCCTCGCACCTTTCCTCAGCATCGTTCAGATTCTCTGAATC
>TU2092766
ACCTTGTCAAAGTTCCTCTGCTTCTTGTCAAGGTTAGCGGCCATGGCGTTGGCTCTCTCAACGTCAATCATGaggtcctccacctctccctgcagTCTCTGCTTGGTCTTCTCCAGGGAGGCACACTTTGAGTTGGTCGCCTCAATGGTCTCCTCAGCCTCCTGCAGACGCTGGGCCAGCTTCTTCTCAATGGTCTCCTCAGCCTCCTGCAGACGCTGGGCCAGCTTCTTCCTGTTGGACAA
>TU2092781
TTCCAGCAATCTGTTTTTCAATCCACCCTGCTGTTAACTCACCCTGGACTCCAGTTTCTGGAGCTGCTTCTTGCCTCCCTTCATGGCCAGATTCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTGACTGTGACCTCCaggttcttcttcatcctctccaggtgagagctggtgtcctgctccttcttcagctcctcaGCCATCATGGCCAGATTCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTGACTGTGACCTCCaggttcttcttcatcctctccaggtgagagctggtgtcctgctccttcttcagctcctcaGCCATCATGGCCGC
>TU2092768
ATTTTCTGTCAGGAGTCTGGCCCTCTGTCCGCTGATGTCGTTCACCTGGCGAGCATTCTCATCATTCTTAGTCTTGAGCTCGCTCAGCTGGTCCTCAAGAGTACGGCACATCTTCTCCAGATTGCCCTGTTAGTGAAACATATGGGACTGTCAACTTCAGTTTATTGAATGGTAATTTAGCTGACCATCCTCAACACTGCTTGACCAAAACATCACTACTCACCTTAGTCTTGGCGACAGCCTCCATGTTGCTGGAGAGGTCATCAATCTCCATCTTGTACtcgctcttctccttctccagcttctGCTTGACGCGCTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCTGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGCTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGTCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagagaCTGATTGAGGAGGAGGTCAAGgctaAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGATCTCCTGAGAGAGCCGTTTGAGGAGGAACAGGAGGCCAAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCCATGGCCGCCAACCA
>TU2092777
AATATCACCCTAGAGAGCGGTTTATAAATGTTCACCTTGTCGAAGTTCCTCTGCTTCTTGTCAAGGTTAGCGGCCATGGCGTTGGCTCTCTCAACGTCAATCATGaggtcctccacctctccctgcagTCTCTGCTTGGTCTTCTCCAGGGAGGCACACTTTGAGTTGGTCGCCTCAATGGTCTCCTCAGCCTCCTGCAGACGCTGGGCCAGCTTCTTCCTGGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCCATGGCCGCCAACCA
>TU2092790
GTCGTCCACTTGCTGTTCCAGCTTGGTCTTGGCCTTGGTCAGAGTGTTGACTTtgtcctcctctgcctgcaggtcATCCAGTGTCTGCTGGTGGGCCTCTTGGAGGGCTTTCTTCTCCTTGGTCAGCTTGGCAACACTCTCATCCACAGACGCCATCTCCTCTTGGCCTTGGTCAGAGTGTTGACTTtgtcctcctctgcctgcaggtcATCCAGTGTCTGCTGGTGTGCCTCTTGGAGGGCTTTCTTCTCCTTGGTCAGCTTGGCAACACTCTCATCCACAGACGCCATCTCCTCTGTCAGGTTTTTCAACCTTGTTTTCAGTGGCGTGCTTCTCCTTCTCCACTTTGGCCAAGGTGAGCTCCAGGTCATCAATGtccttcttcagctcagagcactCGTCCTCCAGCTTCCTCTTCTTGGCAGTCAACTCAGCAttcatctcctcctcatcctccagcctCTCAGTCGTCTCTTTGAGTTTGGCCTCCAGCTGGATCTTGCTCTTGATGAGCCCCTCACACCTTTCCTCAGCATCGTTCAGATTCTCTGAATCCTGGTTTCAGAACAAGAGAAAAAAACTGTGTTTTCACTTTGTGTATCAACATTTAGACCTTATTTAGTCAAATAATTC

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532987 False 3005 mRNA 0.51 17 8850836 8857531
TU2092789 False 319 lncRNA 0.55 2 8838876 8845583
TU2092766 False 242 lncRNA 0.56 3 8841756 8945963
TU2092781 False 336 lncRNA 0.55 2 8845412 8896548
TU2092768 False 1095 TUCP 0.55 6 8850933 8886582
TU2092777 False 413 TUCP 0.56 3 8850933 8887584
TU2092790 True 633 lncRNA 0.51 3 8883928 8943285

Neighbor

gene id symbol gene type direction distance location
LOC118943825 polr3a coding downstream 37723 8736063 ~ 8813113 (-)
star2 LOC106577426 coding downstream 173818 8665409 ~ 8677018 (-)
LOC110515815 LOC106594691 coding downstream 531098 8315622 ~ 8319738 (-)
LOC118936473 LOC106594692 coding downstream 536461 8303445 ~ 8314375 (-)
LOC118943919 LOC106560865 coding downstream 547421 8290470 ~ 8303415 (-)
LOC118943828 LOC106564289 coding upstream 46343 8903874 ~ 8916388 (-)
dpysl4 dpysl4 coding upstream 140909 8998440 ~ 9035634 (-)
jakmip3 LOC106577179 coding upstream 191669 9049200 ~ 9133856 (-)
LOC110532938 LOC105009682 coding upstream 322155 9179686 ~ 9209336 (-)
LOC110512783 tcerg1l coding upstream 548506 9406037 ~ 9611812 (-)
G1827248 NA non-coding downstream 6099 8844430 ~ 8844737 (-)
G1827224 NA non-coding downstream 33779 8816684 ~ 8817057 (-)
G1827219 NA non-coding downstream 43108 8807447 ~ 8807728 (-)
G1827215 NA non-coding downstream 63326 8786753 ~ 8787510 (-)
G1827210 NA non-coding downstream 89179 8759927 ~ 8761657 (-)
G1827234 NA non-coding upstream 24719 8882250 ~ 8940810 (-)
G1827258 NA non-coding upstream 25521 8883052 ~ 8941770 (-)
G1827260 NA non-coding upstream 65012 8922543 ~ 8948326 (-)
G1827263 NA non-coding upstream 76471 8934002 ~ 8934561 (-)
G1827269 NA non-coding upstream 95539 8953070 ~ 8956162 (-)
G1826594 NA other downstream 703832 8143183 ~ 8147004 (-)
G1826369 NA other downstream 890012 7959839 ~ 7960824 (-)
G1826079 NA other downstream 1265859 7584564 ~ 7584977 (-)
G1825645 LOC106593297 other downstream 1923492 6926852 ~ 6943944 (-)
G1825658 NA other downstream 2025018 6823168 ~ 6825818 (-)
G1827339 NA other upstream 301666 9159197 ~ 9159615 (-)
G1827656 NA other upstream 608539 9466070 ~ 9466490 (-)
G1827690 NA other upstream 686852 9544383 ~ 9544973 (-)
LOC110531428 glrx3 coding upstream 936080 9882043 ~ 9914708 (-)
G1827207 NA non-coding downstream 83649 8754623 ~ 8755227 (-)
G1827276 LOC106577419 non-coding upstream 19335 8965298 ~ 8969993 (-)
G1827285 LOC106577418 non-coding upstream 44316 8990279 ~ 8991646 (-)
G1827287 LOC106577418 non-coding upstream 47105 8993068 ~ 8995065 (-)

Expression


Co-expression Network